Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
- PMID:10436161
- DOI: 10.1126/science.285.5429.901
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
Abstract
The functions of many open reading frames (ORFs) identified in genome-sequencing projects are unknown. New, whole-genome approaches are required to systematically determine their function. A total of 6925 Saccharomyces cerevisiae strains were constructed, by a high-throughput strategy, each with a precise deletion of one of 2026 ORFs (more than one-third of the ORFs in the genome). Of the deleted ORFs, 17 percent were essential for viability in rich medium. The phenotypes of more than 500 deletion strains were assayed in parallel. Of the deletion strains, 40 percent showed quantitative growth defects in either rich or minimal medium.
Similar articles
- Disruption and basic functional analysis of five chromosome X novel ORFs of Saccharomyces cerevisiae reveals YJL125c as an essential gene for vegetative growth.Jaquet L, Jauniaux JC.Jaquet L, et al.Yeast. 1999 Jan 15;15(1):51-61. doi: 10.1002/(SICI)1097-0061(19990115)15:1<51::AID-YEA330>3.0.CO;2-1.Yeast. 1999.PMID:10028185
- Disruption of six open reading frames on chromosome X of Saccharomyces cerevisiae reveals a cluster of four essential genes.Esser K, Scholle B, Michaelis G.Esser K, et al.Yeast. 1999 Jul;15(10B):921-33. doi: 10.1002/(SICI)1097-0061(199907)15:10B<921::AID-YEA389>3.0.CO;2-6.Yeast. 1999.PMID:10407272
- Mass-murder deletion of 19 ORFs from Saccharomyces cerevisiae chromosome XI.Vandenbol M, Fairhead C.Vandenbol M, et al.Gene. 2000 Apr 18;247(1-2):45-52. doi: 10.1016/s0378-1119(00)00127-x.Gene. 2000.PMID:10773443
- The yeast deletion collection: a decade of functional genomics.Giaever G, Nislow C.Giaever G, et al.Genetics. 2014 Jun;197(2):451-65. doi: 10.1534/genetics.114.161620. Epub 2014 Jun 17.Genetics. 2014.PMID:24939991Free PMC article.Review.
- Functional analysis of the yeast genome.Winzeler EA, Davis RW.Winzeler EA, et al.Curr Opin Genet Dev. 1997 Dec;7(6):771-6. doi: 10.1016/s0959-437x(97)80039-1.Curr Opin Genet Dev. 1997.PMID:9468786Review.
Cited by
- Genome-scale modeling enables metabolic engineering of Saccharomyces cerevisiae for succinic acid production.Agren R, Otero JM, Nielsen J.Agren R, et al.J Ind Microbiol Biotechnol. 2013 Jul;40(7):735-47. doi: 10.1007/s10295-013-1269-3. Epub 2013 Apr 23.J Ind Microbiol Biotechnol. 2013.PMID:23608777
- Control of Plasma Membrane Permeability by ABC Transporters.Khakhina S, Johnson SS, Manoharlal R, Russo SB, Blugeon C, Lemoine S, Sunshine AB, Dunham MJ, Cowart LA, Devaux F, Moye-Rowley WS.Khakhina S, et al.Eukaryot Cell. 2015 May;14(5):442-53. doi: 10.1128/EC.00021-15. Epub 2015 Feb 27.Eukaryot Cell. 2015.PMID:25724885Free PMC article.
- Identification of Coq11, a new coenzyme Q biosynthetic protein in the CoQ-synthome in Saccharomyces cerevisiae.Allan CM, Awad AM, Johnson JS, Shirasaki DI, Wang C, Blaby-Haas CE, Merchant SS, Loo JA, Clarke CF.Allan CM, et al.J Biol Chem. 2015 Mar 20;290(12):7517-34. doi: 10.1074/jbc.M114.633131. Epub 2015 Jan 28.J Biol Chem. 2015.PMID:25631044Free PMC article.
- Systematic analysis of nuclear gene function in respiratory growth and expression of the mitochondrial genome inS. cerevisiae.Stenger M, Le DT, Klecker T, Westermann B.Stenger M, et al.Microb Cell. 2020 Jun 30;7(9):234-249. doi: 10.15698/mic2020.09.729.Microb Cell. 2020.PMID:32904421Free PMC article.
- Functional and topological characterization of transcriptional cooperativity in yeast.Aguilar D, Oliva B.Aguilar D, et al.BMC Res Notes. 2012 May 10;5:227. doi: 10.1186/1756-0500-5-227.BMC Res Notes. 2012.PMID:22574744Free PMC article.
Publication types
MeSH terms
Substances
Related information
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases