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Results for 'Reetu Jaiswal'

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  1.  24
    Why Do We Need to Discuss the Practice of Veiling?ReetuJaiswal &Puja Rai -2025 -Sophia 64 (1):149-168.
    Veiling is one of the sources of seclusion of women from and within society. _Ghūnghat_ (_avagunṭhana, purdāh_) or veiling is primarily associated with covering one’s face which performs various functions. The rationale for veiling could be that it becomes a source of refuge to women from the gaze of others, sometimes providing them with a place of their own, without any interference from others, maintains their respectability and _mān_ or _izzat_ (honour), and becomes a sign of their modesty in society. (...) On the other hand, on analysis, it turns out to be a source of concealment of one’s identity, suppression of one’s sexuality, and a life without any agency. This paper, in the context of the dominant caste of the North Indian Hindu community, will bring out the cultural, social, and gendered aspects of the practice of veiling to show how the acceptance and deference to this practice is the byproduct of women’s conditioning in a patriarchal society. By bringing in the physical and symbolic aspects of veiling, this paper attempts to show how this discussion is significant for the attainment of a ‘good quality of life’ as mentioned by Martha Nussbaum and to come out of the state of an internalised sense of oppression. (shrink)
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  2.  1
    Why Do We Need to Discuss the Practice of Veiling?ReetuJaiswal &Puja Rai -2025 -Sophia 64 (1):149-168.
    Veiling is one of the sources of seclusion of women from and within society. Ghūnghat (avagunṭhana, purdāh) or veiling is primarily associated with covering one’s face which performs various functions. The rationale for veiling could be that it becomes a source of refuge to women from the gaze of others, sometimes providing them with a place of their own, without any interference from others, maintains their respectability and mān or izzat (honour), and becomes a sign of their modesty in society. (...) On the other hand, on analysis, it turns out to be a source of concealment of one’s identity, suppression of one’s sexuality, and a life without any agency. This paper, in the context of the dominant caste of the North Indian Hindu community, will bring out the cultural, social, and gendered aspects of the practice of veiling to show how the acceptance and deference to this practice is the byproduct of women’s conditioning in a patriarchal society. By bringing in the physical and symbolic aspects of veiling, this paper attempts to show how this discussion is significant for the attainment of a ‘good quality of life’ as mentioned by Martha Nussbaum and to come out of the state of an internalised sense of oppression. (shrink)
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  3.  9
    Direct Reduction of Syllogisms with Byzantine Diagrams.Reetu Bhattacharjee -2024 -History and Philosophy of Logic:1-22.
    The paper explores the potential of Byzantine diagrams in syllogistic logic. Byzantine diagrams are originated by Byzantine scholars in the early modern period to use as tools for teaching and studying Aristotelian logic. This paper presents pioneering work on employing Byzantine diagrams for checking syllogistic validity through reduction.
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  4.  37
    Venn Diagram with Names of Individuals and Their Absence: A Non-classical Diagram Logic.Reetu Bhattacharjee,Mihir Kr Chakraborty &Lopamudra Choudhury -2018 -Logica Universalis 12 (1-2):141-206.
    Venn diagram system has been extended by introducing names of individuals and their absence. Absence gives a kind of negation of singular propositions. We have offered here a non-classical interpretation of this negation. Soundness and completeness of the present diagram system have been established with respect to this interpretation.
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  5.  44
    $$hbox {Venn}{i{o1}}$$ Venn i o 1 : A Diagram System for Universe Without Boundary.Reetu Bhattacharjee,Mihir Kr Chakraborty &Lopamudra Choudhury -2019 -Logica Universalis 13 (3):289-346.
    A new diagram system \ where properties are fundamental and an object exists only w.r.t a property is presented. This work modifies both in syntax and semantics the system \ proposed by Choudhury and Chakraborty to picturise and address issues connected with open universe. Semantics for the current system is given. Soundness and completeness w.r.t the semantics are established.
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  6.  40
    (1 other version)Better Cognitive Performance Is Associated With the Combination of High Trait Mindfulness and Low Trait Anxiety.SatishJaiswal,Shao-Yang Tsai,Chi-Hung Juan,Wei-Kuang Liang &Neil G. Muggleton -2018 -Frontiers in Psychology 9.
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  7.  644
    The Vindication of Tarka as a Pramāṇa in Jaina Philosophy.ArvindJaiswal -2019 -Śramaṇa 69 (1):61-68.
    This paper encapsulates the debate as to whether or not tarka is an additional source of knowledge. In this regard, Jaina thinkers opine that they are, unlike Buddhists and Nyāya thinkers, an additional source of knowledge, for what we come to know through tarka is not known through any other means of knowledge. En route, Jaina’s understanding of tarka is put forth, thereafter their criticism of others’ understanding is supplied. Eventually, some recent discussions over this debate are intimated that seem (...) to go in support of Jaina understanding of tarka. These recent discussions hint at the direction in which Jaina thinkers need to advance their stand. (shrink)
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  8.  439
    तादात्म्य की काल-निर्णय आधृत समस्या.ArvindJaiswal -2017 -Anuśīlana 75:139-144.
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  9.  372
    क्या प्रमाणित सत्य विश्वास प्रमा है?ArvindJaiswal -manuscript
    गेटिअर के शोध-पत्र "Is Justified Treu Belief Knowledge" जो कि ANALYSIS में 1963 में प्रकाशित हुआ था उसका यह हिन्दी अनुवाद है। .
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  10.  19
    Insulator-like electrical transport in Al65−xSixCu20Ru15 icosahedral quasicrystals.ArchnaJaiswal &N. P. Lalla -2006 -Philosophical Magazine 86 (6-8):701-707.
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  11.  26
    Kondo-like magnetic scattering in electrical transport of Al70−xBxPd20Mn10 quasicrystals.A.Jaiswal,R. Rawat &N. P. Lalla -2006 -Philosophical Magazine 86 (3-5):679-685.
  12. The ozone hole: An environmental concern of modern times.NeerjaJaiswal -2008 - In Kuruvila Pandikattu,Dancing to Diversity: Science-Religion Dialogue in India. Serials Publications. pp. 110.
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  13.  55
    Unsustainability of Sustainability: Cognitive Frames and Tensions in Bottom of the Pyramid Projects.Garima Sharma &Anand KumarJaiswal -2018 -Journal of Business Ethics 148 (2):291-307.
    Existing research posits that decision makers use specific cognitive frames to manage tensions in sustainability. However, we know less about how the cognitive frames of individuals at different levels in organization interact and what these interactions imply for managing sustainability tensions, such as in Bottom of the Pyramid projects. To address this omission, we ask do organizational and project leaders differ in their understanding of tensions in a BOP project, and if so, how? We answer this question by drawing on (...) a 5-year study of a BOP project of a global pharmaceutical company in India. In line with the existing research, we found three kinds of frames—paradoxical, business case, and business—held differently across organizational levels and over time. We also found that the shift in frames of both project and organizational leaders was mediated by the decision-making horizon. The initial divergence across organizational levels, seen in paradoxical and business frames, was mediated by long-term decision-making horizon. However, there was an eventual convergence toward business frames associated with the shift from long- to shorter-term decision-making horizons and one that led to the project’s closure. We contribute by proposing a dynamic model of cognitive frames in sustainability, where the research has either alluded to top-down or bottom-up understanding. (shrink)
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  14.  562
    Combing Graphs and Eulerian Diagrams in Eristic.Jens Lemanski &Reetu Bhattacharjee -2022 - In Valeria Giardino, Sven Linker, Tony Burns, Francesco Bellucci, J. M. Boucheix & Diego Viana,Diagrammatic Representation and Inference. 13th International Conference, Diagrams 2022, Rome, Italy, September 14–16, 2022, Proceedings. Springer. pp. 97–113.
    In this paper, we analyze and discuss Schopenhauer’s n-term diagrams for eristic dialectics from a graph-theoretical perspective. Unlike logic, eristic dialectics does not examine the validity of an isolated argument, but the progression and persuasiveness of an argument in the context of a dialogue or even controversy. To represent these dialogue situations, Schopenhauer created large maps with concepts and Euler-type diagrams, which from today’s perspective are a specific form of graphs. We first present the original method with Euler-type diagrams, then (...) give the most important graph-theoretical definitions, then discuss Schopenhauer’s diagrams graph-theoretically and finally give an example of how the graphs or diagrams can be used to analyze dialogues. (shrink)
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  15.  22
    An Outlook for AI Innovation in Multimodal Communication Research.Alexander Henlein,Reetu Bhattacharjee &Jens Lemanski -2024 - In Duffy Vincent G.,Digital Human Modeling and Applications in Health, Safety, Ergonomics and Risk Management (HCII 2024). pp. 182–234.
    In the rapidly evolving landscape of multimodal communication research, this paper explores the transformative role of machine learning (ML), particularly using multimodal large language models, in tracking, augmenting, annotating, and analyzing multimodal data. Building upon the foundations laid in our previous work, we explore the capabilities that have emerged over the past years. The integration of ML allows researchers to gain richer insights from multimodal data, enabling a deeper understanding of human (and non-human) communication across modalities. In particular, augmentation methods (...) have become indispensable because they facilitate the synthesis of multimodal data and further increase the diversity and richness of training datasets. In addition, ML-based tools have accelerated annotation processes, reducing human effort while improving accuracy. Continued advances in ML and the proliferation of more powerful models suggest even more sophisticated analyses of multimodal communication, e.g., through models like ChatGPT, which can now “understand” images. This makes it all the more important to assess what these models can achieve now or in the near future, and what will remain unattainable beyond that. We also acknowledge the ethical and practical challenges associated with these advancements, emphasizing the importance of responsible AI and data privacy. We must be careful to ensure that benefits are shared equitably and that technology respects individual rights. In this paper, we highlight advances in ML-based multimodal research and discuss what the near future holds. Our goal is to provide insights into this research stream for both the multimodal research community, especially in linguistics, and the broader ML community. In this way, we hope to foster collaboration in an area that is likely to shape the future of technologically mediated human communication. (shrink)
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  16.  18
    Dynamical Techniques for Analyzing Iterative Schemes with Memory.Neha Choubey,A. Cordero,J. P.Jaiswal &J. R. Torregrosa -2018 -Complexity 2018:1-13.
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  17.  41
    Inductive Inferences inCL Diagrams.Jens Lemanski &Reetu Bhattacharjee -2022 - In Matthias Thimm, Jürgen Landes & Kenneth Skiba,Proceedings of the First International Conference on Foundations, Applications, and Theory of Inductive Logic (FATIL2022). deposit_Hagen. pp. 70-73.
    CL diagrams – the abbreviation of Cubus Logicus – are inspired by J.C. Lange’s logic machine from 1714. In recent times, Lange’s diagrams have been used for extended syllogistics, bitstring semantics, analogical reasoning and many more. The paper presents a method for testing statistical syllogisms (also called proportional syllogisms or inductive syllogisms) by using CL diagrams.
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  18.  29
    Corrigendum to “Dynamical Techniques for Analyzing Iterative Schemes with Memory”.Neha Choubey,A. Cordero,J. P.Jaiswal &J. R. Torregrosa -2018 -Complexity 2018:1-1.
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  19.  26
    Climate change and women's voices from india.Biju Negi,Reetu Sogani &Vijay Kumar Pandey -2010 - In Irene Dankelman,Gender and Climate Change: An Introduction. Earthscan.
  20.  26
    All Job Demands are Not Equal: Exploring the Two Sides of a Coin.Alka Rai &ShwetaJaiswal -2019 -International Journal of Management Concepts and Philosophy 1 (1):1.
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  21.  17
    All job demands are not equal: exploring the two sides of a coin.Alka Rai &ShwetaJaiswal Thakur -2020 -International Journal of Management Concepts and Philosophy 13 (2):99.
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  22.  6
    Representing Uncertainty with Expanded Ueberweg Diagrams.Amirouche Moktefi,Reetu Bhattacharjee &Jens Lemanski -2024 - In Jens Lemanski, Mikkel Willum Johansen, Emmanuel Manalo, Petrucio Viana, Reetu Bhattacharjee & Richard Burns,Diagrammatic Representation and Inference 14th International Conference, Diagrams 2024, Münster, Germany, September 27 – October 1, 2024, Proceedings. Cham: Springer. pp. 207–214.
    Euler diagrams often require several figures to adequately represent propositions and syllogisms. Euler’s followers, notably Friedrich Ueberweg, endeavored to overcome this difficulty with the use of dotted lines to express uncertainty about the relation between the terms of a proposition. Subsequently, Venn regarded such attempts as ineffectual and went to construct his own celebrated scheme. In this paper, we argue that Ueberweg’s method could be expanded to meet Venn’s expectations, and hence, produce alternative Venn-like diagrams.
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  23.  296
    Global Standards and Ethical Stock Indexes: The Case of the Dow Jones Sustainability Stoxx Index. [REVIEW]Costanza Consolandi,AmeetaJaiswal-Dale,Elisa Poggiani &Alessandro Vercelli -2009 -Journal of Business Ethics 87 (1):185 - 197.
    The increased scrutiny of investors regarding the non-financial aspects of corporate performance has placed portfolio managers in the position of having to weigh the benefits of ' holding the market' against the cost of having positions in companies that are subsequently found to have questionable business practices. The availability of stock indexes based on sustainability screening makes increasingly viable for institutional investors the transition to a portfolio based on a Socially Responsible Investment (SRI) benchmark at relatively low cost. The increasing (...) share of socially responsible investments may play a role in providing incentives towards a continuous upgrading of sustainability standards to the extent that their performance is not systematically inferior to that of the other funds. This article examines whether these incentives have been so far detectable with particular reference to the Dow Jones Sustainability Stoxx Index (DJSSI) that focuses on the European corporations with the highest CSR scores among those included in the Dow Jones Stoxx 600 Index. The aim of the article is twofold. First, we analyse the performance of the DJSSI over the period 2001-2006 compared to that of the Surrogate Complementary Index (SCI), a new benchmark that includes only the components of the DJ Stoxx 600 that do not belong to the ethical index to evaluate more correctly the size of possible divergent performances. Second, we perform an event study on the same data set to analyse whether the stock market evaluation reacts to the inclusion (deletion) in the DJSSI. In both cases, the results suggest that the evaluation of the CSR performance of a firm is a significant criterion for asset allocation activities. (shrink)
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  24.  23
    The Origin and Development of VaiṣṇavismThe Origin and Development of Vaisnavism.Guy Richard Welbon &SuviraJaiswal -1969 -Journal of the American Oriental Society 89 (3):638.
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  25.  9
    On the Expressivity of Byzantine Diagrams in Logic.Jens Lemanski &Reetu Bhattacharjee -2024 - In Jens Lemanski, Mikkel Willum Johansen, Emmanuel Manalo, Petrucio Viana, Reetu Bhattacharjee & Richard Burns,Diagrammatic Representation and Inference 14th International Conference, Diagrams 2024, Münster, Germany, September 27 – October 1, 2024, Proceedings. Cham: Springer. pp. 429–445.
    ‘Byzantine logic diagrams’ have been used since at least late antiquity, and became popular in Europe in the 16th century. However, since the criticism of W. Hamilton and J. Venn in the 19th century, Byzantine diagrams have been largely dismissed as obsolete. This paper challenges this prevailing view. Initially, we provide a comprehensive overview of the current state of research pertaining to these diagrams, illustrating their applicability in analyzing assertoric syllogisms. Subsequently, we propose that the expressive capacity of these diagrams (...) extends far beyond their traditional use. In particular, we demonstrate that the expressivity of these diagrams is not limited to checking the validity of syllogisms. Rather, we show that there are various extensions of Byzantine diagrams, including opposition relations, modal logic, particular instances, n-term diagrams and logical connectives. These extensions are compositional and can therefore be combined to create very complex Byzantine diagrams that go far beyond what has been commonly believed since Hamilton and Venn. (shrink)
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  26.  69
    Inequity in Health Care Delivery in India: The Problem of Rural Medical Practitioners. [REVIEW]Rashmi Kumar,VijayJaiswal,Sandeep Tripathi,Akshay Kumar &M. Z. Idris -2007 -Health Care Analysis 15 (3):223-233.
    A considerable section of the population in India accesses the services of individual private medical practitioners (PMPs) for primary level care. In rural areas, these providers include MBBS doctors, practitioners of alternative systems of medicine, herbalists, indigenous and folk practitioners, compounders and others. This paper describes the profile, knowledge and some practices of the rural doctor in India and then discusses the reasons for lack of equity in health care access in rural areas and possible solutions to the problem.
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  27. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.Laurel Cooper,Austin Meier,Marie-Angélique Laporte,Justin L. Elser,Chris Mungall,Brandon T. Sinn,Dario Cavaliere,Seth Carbon,Nathan A. Dunn,Barry Smith,Botong Qu,Justin Preece,Eugene Zhang,Sinisa Todorovic,Georgios Gkoutos,John H. Doonan,Dennis W. Stevenson,Elizabeth Arnaud &PankajJaiswal -2018 -Nucleic Acids Research 46 (D1):D1168–D1180.
    The Planteome project provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology, and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides (...) access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. (shrink)
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  28.  92
    The Role of Gestures in Logic.Andrea Reichenberger,Jens Lemanski &Reetu Bhattacharjee -forthcoming -Multimodal Communication.
    Gestures are usually regarded as a casual element of communication processes between logicians. By contrast, we aim to show that gestures have played a significant role in logic. We argue that the development of communication techniques and their standardization have led to the rise of formal notation systems commonly used in logic today. In order to substantiate this claim, the historical development of the use of gestures in (early) modern logic is investigated. This investigation uncovers exemplary communication and proof techniques (...) that illustrate the efficacy of gestures as representational media in formal logic. Revisiting the tradition of gestures in logic offers promising paths and insights for today’s logic as a communication practice in the digital age. (shrink)
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  29.  33
    Preparing for a Sustainable Future.Fayez Albadri,Najwa Ashal,Ambareen Beebeejaun,Khoyratty Bushra,David Crowther,Maria Costa,Marcia Juliana D’Angelo,Bheekharry Normada Devi,Cristina Góis,Srushti Govilkar,KritikaJaiswal,Vimi Neeroo Lockmun-Bissessur,Chris McLean,José Lázaro Oliveira Nunes,Flávio Oliveira,Swaleha Peeroo,Dineshwar Ramdhony,Raysa Geaquinto Rocha,Martin Samy,Maria João Santos,Aatman Shukla,Ruchi Tewari,Subrun Veerunjaysingh &Clara Viseu -2023 - Springer Nature Singapore.
    The term sustainability has become one of the most significant in the current era. It seems to be ubiquitous amongst academics, politicians, business leaders, media personnel and even the general public. It is no exaggeration to state that it is considered all over the world to be the most pressing issue to be addressed for the long-term future of the planet and its inhabitants. The topic is of course complex, and the issue of sustainability is under much debate as to (...) what it actually is and how it can be achieved, but it is completely certain that the resources of the planet are fixed in quantity and, once used, cannot be reused except through being reused in one form or another. At present, much of the discourse of sustainability has focused upon the environment and in particular upon climate change and the effects that this is having. Thus, the discourse has tended to be about mitigation. Sustainability of course requires all three pillars of the triple bottom line—economic, environmental and social—to be addressed. Indeed, it might be considered that the effects upon the social, and how we choose to live our lives, might well be the most profound effect of achieving sustainability. This book therefore focuses upon some of the many aspects of the social and how we can adapt our lives to accommodate the requirements of sustainability. it therefore takes a very different approach to addressing the issues of sustainability, while of course not ignoring the other pillars. This book therefore sets out to examine various aspects of the changes to personal, corporate and institutional behaviour which may have to come about in our search for sustainability. It is tended to address some of the issues and how they are being dealt with in various parts of the world. As always, our concept is to share best practice and thereby enrich both the discourse and our progress towards sustainability. Thus, we focus upon the current situation while also considering the extent to which the focus is changing so much that we need to think about new approaches to our understanding of behaviour and differing effects in practice. The international origins of the contributors to this book make this an original contribution taking some of the best ideas from around the world. This book therefore addresses these issues from a perspective not generally addressed by researchers, or even by politicians and the press. It therefore provides fresh perspectives upon the important issue of our common future. As always, this approach is based on the tradition of the Social Responsibility Research Network srrnet.org (a worldwide body of scholars with membership of several thousand), which in its 20-year history has sought to broaden the discourse and to treat all research as inter-related and relevant to business. This tradition has always been to explore the subject widely and to seek relevant solutions, while also sharing best practice. This book is based primarily upon some of the contributions from the network at our recent conference and shows both commonality and diversity in approaches and effects. (shrink)
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  30.  20
    Diagrammatic Representation and Inference 14th International Conference, Diagrams 2024, Münster, Germany, September 27 – October 1, 2024, Proceedings.Jens Lemanski,Mikkel Willum Johansen,Emmanuel Manalo,Petrucio Viana,Reetu Bhattacharjee &Richard Burns (eds.) -2024 - Cham: Springer.
    This book constitutes the refereed proceedings of the 14th International Conference on the Theory and Application of Diagrams, Diagrams 2024, held in Münster, Germany, during September 27–October 1, 2024. -/- The 17 full papers, 19 short papers and 11 papers of other types included in this book were carefully reviewed and selected from 69 submissions. They were organized in topical sections as follows: Keynote Talks; Analysis of Diagrams; Euler and Venn Diagrams; Diagrams in Logic; Diagrams and Applications; Diagram Tools; Historical (...) Aspects of Diagrams; and Posters. (shrink)
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  31.  25
    To Go or Not to Go: Degrees of Dynamic Inhibitory Control Revealed by the Function of Grip Force and Early Electrophysiological Indices.Trung Van Nguyen,Che-Yi Hsu,SatishJaiswal,Neil G. Muggleton,Wei-Kuang Liang &Chi-Hung Juan -2021 -Frontiers in Human Neuroscience 15.
    A critical issue in executive control is how the nervous system exerts flexibility to inhibit a prepotent response and adapt to sudden changes in the environment. In this study, force measurement was used to capture “partial” unsuccessful trials that are highly relevant in extending the current understanding of motor inhibition processing. Moreover, a modified version of the stop-signal task was used to control and eliminate potential attentional capture effects from the motor inhibition index. The results illustrate that the non-canceled force (...) and force rate increased as a function of stop-signal delay, offering new objective indices for gauging the dynamic inhibitory process. Motor response was a function of delay in the presentation of novel/infrequent stimuli. A larger lateralized readiness potential amplitude in go and novel stimuli indicated an influence of the novel stimuli on central motor processing. Moreover, an early N1 component reflects an index of motor inhibition in addition to the N2 component reported in previous studies. Source analysis revealed that the activation of N2 originated from inhibitory control associated areas: the right inferior frontal gyrus, pre-motor cortex, and primary motor cortex. Regarding partial responses, LRP and error-related negativity were associated with error correction processes, whereas the N2 component may indicate the functional overlap between inhibition and error correction. In sum, the present study has developed reliable and objective indices of motor inhibition by introducing force, force-rate and electrophysiological measures, further elucidating our understandings of dynamic motor inhibition and error correction. (shrink)
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  32. Ontologies as Integrative Tools for Plant Science.Ramona Walls,Balaji Athreya,Laurel Cooper,Justin Elser,Maria A. Gandolfo,PankajJaiswal,Christopher J. Mungall,Justin Preece,Stefan Rensing,Barry Smith &Dennis W. Stevenson -2012 -American Journal of Botany 99 (8):1263–1275.
    Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the Semantic Web. This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are relevant to plant science, (...) with a detailed description of the Plant Ontology (PO). We discuss the challenges of building an ontology that covers all green plants (Viridiplantae). Key results: Ontologies can advance plant science in four keys areas: 1. comparative genetics, genomics, phenomics, and development, 2. taxonomy and systematics, 3. semantic applications and 4. education. Conclusions: Bio-ontologies offer a flexible framework for comparative plant biology, based on common botanical understanding. As genomic and phenomic data become available for more species, we anticipate that the annotation of data with ontology terms will become less centralized, while at the same time, the need for cross-species queries will become more common, causing more researchers in plant science to turn to ontologies. (shrink)
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  33.  471
    The Plant Ontology: A common reference ontology for plants.L. Walls Ramona,D. Cooper Laurel,Elser Justin,W. Stevenson Dennis,Barry Smith,Mungall Chris,A. Gandolfo Maria &Jaiswal Pankaj -2010 - In Walls Ramona L., Cooper Laurel D., Justin Elser, Stevenson Dennis W., Smith Barry, Chris Mungall, Gandolfo Maria A. & Pankaj Jaiswal,Proceedings of the Workshop on Bio-Ontologies, ISMB, Boston, July, 2010.
    The Plant Ontology (PO) (http://www.plantontology.org) (Jaiswal et al., 2005; Avraham et al., 2008) was designed to facilitate cross-database querying and to foster consistent use of plant-specific terminology in annotation. As new data are generated from the ever-expanding list of plant genome projects, the need for a consistent, cross-taxon vocabulary has grown. To meet this need, the PO is being expanded to represent all plants. This is the first ontology designed to encompass anatomical structures as well as growth and developmental (...) stages across such a broad taxonomic range. While other ontologies such as the Gene Ontology (GO) (The Gene Ontology Consortium, 2010) or Cell Type Ontology (CL) (Bard et al., 2005) cover all living organisms, they are confined to structures at the cellular level and below. The diversity of growth forms and life histories within plants presents a challenge, but also provides unique opportunities to study developmental and evolutionary homology across organisms. (shrink)
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  34.  602
    The Plant Ontology facilitates comparisons of plant development stages across species.Ramona Lynn Walls,Laurel Cooper,Justin Lee Elser,Maria Alejandra Gandolfo,Christopher J. Mungall,Barry Smith,Dennis William Stevenson &PankajJaiswal -2019 -Frontiers in Plant Science 10.
    The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies. This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. It also provides details of the methodology and rationale behind our revision and expansion of the PO to cover development stages for all plants, particularly (...) the land plants (bryophytes through angiosperms). As a case study to illustrate the general approach, we examine variation in gene expression across embryo development stages in Arabidopsis and maize, demonstrating how the PO can be used to compare patterns of expression across stages and in developmentally different species. Although many genes appear to be active throughout embryo development, we identified a small set of uniquely expressed genes for each stage of embryo development and also between the two species. Evaluating the different sets of genes expressed during embryo development in Arabidopsis or maize may inform future studies of the divergent developmental pathways observed in monocotyledonous versus dicotyledonous species. The PO and its annotation databasemake plant data for any species more discoverable and accessible through common formats, thus providing support for applications in plant pathology, image analysis, and comparative development and evolution. (shrink)
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    A plant disease extension of the Infectious Disease Ontology.Ramona Walls,Barry Smith,Elser Justin,Goldfain Albert,W. Stevenson Dennis &PankajJaiswal -2012 - In Walls Ramona, Smith Barry, Justin Elser, Albert Goldfain & Stevenson Dennis W.,Proceeedings of the Third International Conference on Biomedical Ontology (CEUR 897). pp. 1-5.
    Plants from a handful of species provide the primary source of food for all people, yet this source is vulnerable to multiple stressors, such as disease, drought, and nutrient deficiency. With rapid population growth and climate uncertainty, the need to produce crops that can tolerate or resist plant stressors is more crucial than ever. Traditional plant breeding methods may not be sufficient to overcome this challenge, and methods such as highOthroughput sequencing and automated scoring of phenotypes can provide significant new (...) insights. Ontologies are essential tools for accessing and analysing the large quantities of data that come with these newer methods. As part of a larger project to develop ontologies that describe plant phenotypes and stresses, we are developing a plant disease extension of the Infectious Disease Ontology (IDOPlant). The IDOPlant is envisioned as a reference ontology designed to cover any plant infectious disease. In addition to novel terms for infectious diseases, IDOPlant includes terms imported from other ontologies that describe plants, pathogens, and vectors, the geographic location and ecology of diseases and hosts, and molecular functions and interactions of hosts and pathogens. To encompass this range of data, we are suggesting inOhouse ontology development complemented with reuse of terms from orthogonal ontologies developed as part of the Open Biomedical Ontologies (OBO) Foundry. The study of plant diseases provides an example of how an ontological framework can be used to model complex biological phenomena such as plant disease, and how plant infectious diseases differ from, and are similar to, infectious diseases in other organism. (shrink)
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