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Results for 'Jaime A. Roper'

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  1.  41
    Neurophysiological Correlates of Gait in the Human Basal Ganglia and the PPN Region in Parkinson’s Disease.Rene Molina,Chris J. Hass,Kristen Sowalsky,Abigail C. Schmitt,Enrico Opri,Jaime A.Roper,Daniel Martinez-Ramirez,Christopher W. Hess,Kelly D. Foote,Michael S. Okun &Aysegul Gunduz -2020 -Frontiers in Human Neuroscience 14.
  2.  24
    Self-Regulation of the Fusiform Face Area in Autism Spectrum: A Feasibility Study With Real-Time fMRI Neurofeedback.Jaime A. Pereira,Pradyumna Sepulveda,Mohit Rana,Cristian Montalba,Cristian Tejos,Rafael Torres,Ranganatha Sitaram &Sergio Ruiz -2019 -Frontiers in Human Neuroscience 13.
  3.  27
    A real-time fMRI neurofeedback system for the clinical alleviation of depression with a subject-independent classification of brain states: A proof of principle study.Jaime A. Pereira,Andreas Ray,Mohit Rana,Claudio Silva,Cesar Salinas,Francisco Zamorano,Martin Irani,Patricia Opazo,Ranganatha Sitaram &Sergio Ruiz -2022 -Frontiers in Human Neuroscience 16.
    Most clinical neurofeedback studies based on functional magnetic resonance imaging use the patient's own neural activity as feedback. The objective of this study was to create a subject-independent brain state classifier as part of a real-time fMRI neurofeedback system that can guide patients with depression in achieving a healthy brain state, and then to examine subsequent clinical changes. In a first step, a brain classifier based on a support vector machine was trained from the neural information of happy autobiographical imagery (...) and motor imagery blocks received from a healthy female participant during an MRI session. In the second step, 7 right-handed female patients with mild or moderate depressive symptoms were trained to match their own neural activity with the neural activity corresponding to the “happiness emotional brain state” of the healthy participant. The training was carried out using the rt-fMRI NF system guided by the brain-state classifier we had created. Thus, the informative voxels previously obtained in the first step, using SVM classification and Effect Mapping, were used to classify the Blood-Oxygen-Level Dependent activity of the patients and converted into real-time visual feedback during the neurofeedback training runs. Improvements in the classifier accuracy toward the end of the training were observed in all the patients [Session 4–1 Median = 6.563%; Range = 4.10–27.34; Wilcoxon Test, 2-tailed p = 0.031]. Clinical improvement also was observed in a blind standardized clinical evaluation [HDRS CE2-1 Median = 7; Range 2 to 15; Wilcoxon Test, 2-tailed p = 0.016], and in self-report assessments [BDI-II CE2-1 Median = 8; Range 1–15; Wilcoxon Test, 2-tailed p = 0.031]. In addition, the clinical improvement was still present 10 days after the intervention [BDI-II CE3-2_Median = 0; Range −1 to 2; Wilcoxon Test, 2-tailed p = 0.50/ HDRS CE3-2 Median = 0; Range −1 to 2; Wilcoxon Test, 2-tailed p = 0.625]. Although the number of participants needs to be increased and a control group included to confirm these findings, the results suggest a novel option for neural modulation and clinical alleviation in depression using noninvasive stimulation technologies. (shrink)
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  4.  631
    Editors with multiple retractions, but who serve on journal editorial boards: Case studies.Jaime A. Teixeira da Silva &Quan-Hoang Vuong -2023 -Epistēmēs Metron Logos 9:1-8.
    In a recent opinion paper, it was argued that individuals with multiple retractions or a record of academic misconduct should not serve as editors, including as editors-in-chief, on the editorial boards of scholarly or academic journals. As a first step towards appreciating how such a policy could be applied in practice, the presence of 30 individuals listed on the Retraction Watch Leaderboard on editorial boards was screened. Six cases are highlighted to gain an appreciation of the potential reputational risks that (...) journals and publishers might incur by including individuals with a tainted academic record on editorial boards. Given the reputational, legal and other risks associated with this type of assessment and decision, more formal positioning and guidance are needed by global ethics policy-related bodies such as COPE, the ICMJE, and the CSE, even more so in journals that claim to follow these organizations’ ethical guidelines. (shrink)
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  5.  30
    Optimizing peer review to minimize the risk of retracting COVID-19-related literature.Jaime A. Teixeira da Silva,Helmar Bornemann-Cimenti &Panagiotis Tsigaris -2020 -Medicine, Health Care and Philosophy 24 (1):21-26.
    Retractions of COVID-19 literature in both preprints and the peer-reviewed literature serve as a reminder that there are still challenging issues underlying the integrity of the biomedical literature. The risks to academia become larger when such retractions take place in high-ranking biomedical journals. In some cases, retractions result from unreliable or nonexistent data, an issue that could easily be avoided by having open data policies, but there have also been retractions due to oversight in peer review and editorial verification. As (...) COVID-19 continues to affect academics and societies around the world, failures in peer review might also constitute a public health risk. The effectiveness by which COVID-19 literature is corrected, including through retractions, depends on the stringency of measures in place to detect errors and to correct erroneous literature. It also relies on the stringent implementation of open data policies. (shrink)
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  6.  35
    MacchiariniGate: The Fall from Grace of Stem Cell Healer, Paolo Macchiarini, and Clues and Concerns from the Early Literature that Cast Ethical Doubts.Jaime A. Teixeira da Silva -2018 -Bangladesh Journal of Bioethics 9 (1):1-12.
    After a long and successful career in tracheal surgery and lung cancer, Paolo Macchiarini became very famous in 2008 with the transplantation of a trachea from a cadaver that then apparently used the patient’s own stem cells to supposedly regenerate new trachea, i.e., tissue-engineered tracheae. Among the nine patients that received this revolutionary treatment, using biological or artificial tracheae, under Macchiarini’s supervision, six have reportedly died. Although several critics had expressed concerns with the procedures, allegations of misconduct against Macchiarini first (...) arose in August of 2014 by four Karolinska Institutet (KI) colleagues, and an independent investigation was called for by KI based on claims made in seven published papers. Among the claims were the fact that the procedure constituted a high risk, information on the patients was incomplete and that there was no or incomplete ethical approval, thus constituting misconduct. His CV was also shown to contain inaccuracies. By September 10, 2016, most of these claims have now proved to be true, and Macchiarini was found guilty of misconduct by KI. This paper looks primarily at earlier published papers by Macchiarini and his collaborators in a search for clues to better understand the evolution of altruism, or narcissism. An assessment of the controversial papers, and of letters written by critics and skeptics like Pierre R. Delaere, indicate that insufficient experimental evidence was presented for several case studies, and that claims made about the success of the procedures exceeded what was shown by the evidence. A domino effect of personal and professional tragedies ensued, in rapid succession, between 2014 and 2016. The effect on the field of stem cell research has been chilling, and the side-effects have taken their toll, with several high-profile resignations, primarily at KI, within the Swedish education system and in the Nobel Committee. This case has mesmerized the bioethics and biomedical communities for years. (shrink)
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  7.  14
    An applied ontology-Oriented Case Study to Distinguish Public and Private Institutions Through Their Documents.Mauricio B. Almeida &Jaime A. Pinto -2021 -Knowledge Organization 47 (7):582-591.
    The institutions we create shape many of the activities we engage insofar as they are pervasive entities in our society. In an era full of new technologies, including the semantic web, there is a movement toward sound conceptual modeling for socio-technical solutions applied to government institutions. To develop these complex solutions, one needs to deepen the ontological status of entities in the institutional domain, because literature is full of ambiguous and ad-hoc hypotheses about distinctions between public and private corporations. We (...) believe we can find better explanations for such distinctions in the interdisciplinary field of library a information science. Within an ongoing semantic web project, we focus on a study case of official documents. First, we analyze theories about public and private corporations, seeking a reliable on‘tological distinction between them; then, by focusing on documents produced by each type of corporation, we hope to provide a well-founded analysis. Second, we adopt the aforementioned theories and the new analysis as recommendations for the improvement for the access and understanding of public documents, through appropriate classification of them within government information systems. This project, ultimately, aims to maximize the transparency of public government documents by favoring retrieval and comprehension by a society with plenty of automated information systems. (shrink)
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  8.  30
    Handling Ethics Dumping and Neo-Colonial Research: From the Laboratory to the Academic Literature.Jaime A. Teixeira da Silva -2022 -Journal of Bioethical Inquiry 19 (3):433-443.
    This paper explores that the topic of ethics dumping, its causes and potential remedies. In ED, the weaknesses or gaps in ethics policies and systems of lower income countries are intentionally exploited for intellectual or financial gains through research and publishing by higher income countries with a more stringent or complex ethical infrastructure in which such research and publishing practices would not be permitted. Several examples are provided. Possible ED needs to be evaluated before research takes place, and detected prior (...) to publication as an academic paper, because it might lead to a collaborative effort between a wealthier country with restrictive ethical policies and a less wealthy country with more permissive policies. Consequently, if that collaboration ultimately results in an academic paper, there are ethical ramifications of ED to scholarly communication. Institutional review board approval is central to avoid ED-based collaborations. Blind trust and goodwill alone cannot eliminate the exploitation of indigenous or “vulnerable” populations’ intellect and resources. Combining community-based participatory research using clear codes of research conduct and a simple but robust verification system in academic publishing may reduce the risks of ED-based research from being published. (shrink)
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  9.  35
    Providing justice and reconciliation: The criminal tribunals for Sierra Leone and Cambodia. [REVIEW]Lilian A. Barria &Steven D.Roper -2005 -Human Rights Review 7 (1):5-26.
    The Special Court for Sierra Leone and the Extraordinary Chambers for Cambodia represent a departure from the model established by the International Criminal Tribunal for the former Yygoslavia and the International Criminal Tribunal for Rwanda. The SCSL and the ECC have often been referred to as “mixed” or “hybrid” tribunals in which there are significant domestic and international components. The tribunals include a combination of domestic and international judges, utilize domestic and international laws and are administered by a prosecutorial team (...) composed of domestic and international lawyers. Many of these institutional changes have been brought about because of criticisms of the ICTY and the ICTR. The fundamental question of this article is whether these mixed tribunals are a more effective mechanism for providing justice and reconciliation than purely international solutions. This is an important question because both the international community and states are moving in the direction of mixed tribunals. (shrink)
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  10.  56
    Are Pseudonyms Ethical in (Science) Publishing? Neuroskeptic as a Case Study.Jaime A. Teixeira da Silva -2017 -Science and Engineering Ethics 23 (6):1807-1810.
    The blogosphere is full of personalities with masks, or pseudonyms. Although not a desired state of public communication, one could excuse the use of pseudonyms in blogs and social media, which are generally unregulated or weakly regulated. However, in science publishing, there are increasingly strict rules regarding the use of false identities for authors, the lack of institutional or contact details, and the lack of conflicts of interest, and such instances are generally considered to be misconduct. This is because these (...) violations of publishing protocol decrease trust and confidence in science and bring disrepute to those scientists who conform to the rules set out by journals and publishers and abide by them. Thus, when cases are encountered where trust and protocol in publishing are breached, these deserve to be highlighted. In this letter, I focus on Neuroskeptic, a highly prominent science critic, primarily on the blogosphere and in social media, highlighting the dangers associated with the use of pseudonyms in academic publishing. (shrink)
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  11.  64
    What Rights Do Authors Have?Jaime A. Teixeira da Silva &Aceil Al-Khatib -2017 -Science and Engineering Ethics 23 (3):947-949.
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  12.  299
    Should editors with multiple retractions or a record of academic misconduct serve on journal editorial boards?Jaime A. Teixeira da Silva -2022 -European Science Editing 48:e95926.
    In the academic world, despite their corrective nature, there is still a negative stigma attached to retractions, even more so if they are based on ethical infractions. Editors-in-chief and editors are role models in academic and scholarly communities. Thus, if they have multiple retractions or a record of academic misconduct, this viewpoint argues that they should not serve on journals’ editorial boards. The exception is where such individuals have displayed a clear path of scholarly reform. Policy and guidance is needed (...) by organizations such as the Committee on Publication Ethics. (shrink)
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  13.  22
    Junk Science, Junk Journals, and Junk Publishing Management: Risk to Science’s Credibility.Jaime A. Teixeira da Silva -2023 -Philosophia 51 (3):1701-1704.
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  14.  24
    A Synthesis of the Formats for Correcting Erroneous and Fraudulent Academic Literature, and Associated Challenges.Jaime A. Teixeira da Silva -2022 -Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 53 (4):583-599.
    Academic publishing is undergoing a highly transformative process, and many established rules and value systems that are in place, such as traditional peer review (TPR) and preprints, are facing unprecedented challenges, including as a result of post-publication peer review. The integrity and validity of the academic literature continue to rely naively on blind trust, while TPR and preprints continue to fail to effectively screen out errors, fraud, and misconduct. Imperfect TPR invariably results in imperfect papers that have passed through varying (...) levels of rigor of screening and validation. If errors or misconduct were not detected during TPR’s editorial screening, but are detected at the post-publication stage, an opportunity is created to correct the academic record. Currently, the most common forms of correcting the academic literature are errata, corrigenda, expressions of concern, and retractions or withdrawals. Some additional measures to correct the literature have emerged, including manuscript versioning, amendments, partial retractions and retract and replace. Preprints can also be corrected if their version is updated. This paper discusses the risks, benefits and limitations of these forms of correcting the academic literature. (shrink)
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  15.  61
    A new dimension in publishing ethics: social media-based ethics-related accusations.Jaime A. Teixeira da Silva &Judit Dobránszki -2019 -Journal of Information, Communication and Ethics in Society 17 (3):354-370.
    Purpose Whistle-blowing, which has become an integral part of the post-publication peer-review movement, is being fortified by social media. Anonymous commenting on blogs as well as Tweets about suspicions of academic misconduct can spread quickly on social media sites like Twitter. The purpose of this paper is to examine two cases to expand the discussion about how complex post-publication peer review is and to contextualize the use of social media within this movement. Design/methodology/approach This paper examines a Twitter-based exchange between (...) an established pseudonymous blogger and science critic, Neuroskeptic, and Elizabeth Wager, the former COPE Chair, within a wider discussion of the use of social media in post-publication peer review. The paper also discusses false claims made on Twitter by another science watchdog, Leonid Schneider. The policies of 15 publishers related to anonymous or pseudonymous whistle-blowing are examined. Findings Four issues in the Neuroskeptic–Wager case were debated: the solicitation by Wager to publish in RIPR; the use of commercial software by Neuroskeptic to make anonymous reports to journals; the links between “publication ethics” leaders and whistle-blowers or pseudonymous identities; the issues of transparency and possible hidden conflicts of interest. Only one publisher out of 15 scientific publishers examined claimed in its official ethical guidelines that anonymous reports should be investigated in the same way as named reports, while three publishers referred to the COPE guidelines. Originality/value No such Twitter-based case has yet been examined in detail in the publishing ethics literature. (shrink)
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  16.  39
    Editors Should Declare Conflicts of Interest.Jaime A. Teixeira da Silva,Judit Dobránszki,Radha Holla Bhar &Charles T. Mehlman -2019 -Journal of Bioethical Inquiry 16 (2):279-298.
    Editors have increasing pressure as scholarly publishing tries to shore up trust and reassure academics and the public that traditional peer review is robust, fail-safe, and corrective. Hidden conflicts of interest may skew the fairness of the publishing process because they could allow the status of personal or professional relationships to positively influence the outcome of peer review or reduce the processing period of this process. Not all authors have such privileged relationships. In academic journals, editors usually have very specialized (...) skills and are selected as agents of trust, entrusted with the responsibility of serving as quality control gate-keepers during peer review. In many cases, editors form extensive networks, either with other professionals, industry, academic bodies, journals, or publishers. Such networks and relationships may influence their decisions or even their subjectivity towards a set of submitting authors, paper, or institute, ultimately influencing the peer review process. These positions and relationships are not simply aspects of a curriculum, they are potential COIs. Thus, on the editorial board of all academic journals, editors should carry a COI statement that reflects their past history, as well as actual relationships and positions that they have, as these may influence their editorial functions. (shrink)
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  17.  70
    Should Authors be Requested to Suggest Peer Reviewers?Jaime A. Teixeira da Silva &Aceil Al-Khatib -2018 -Science and Engineering Ethics 24 (1):275-285.
    As part of a continuous process to explore the factors that might weaken or corrupt traditional peer review, in this paper, we query the ethics, fairness and validity of the request, by editors, of authors to suggest peer reviewers during the submission process. One of the reasons for the current crisis in science pertains to a loss in trust as a result of a flawed peer review which is by nature biased unless it is open peer review. As we indicate, (...) the fact that some editors and journals rely on authors’ suggestions in terms of who should peer review their paper already instills a potential way to abuse the trust of the submission and publishing system. An author-suggested peer reviewer choice might also tempt authors to seek reviewers who might be more receptive or sympathetic to the authors’ message or results, and thus favor the outcome of that paper. Authors should thus not be placed in such a potentially ethically compromising situation, especially as a mandatory condition for submission. However, the fact that they do not have an opt-out choice during the submission process—especially when using an online submission system that makes such a suggestion compulsory—may constitute a violation of authors’ rights. (shrink)
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  18. Debunking the perceived loss of the Committee on Publication Ethics (COPE) moral compass: conspiracy theory, or a genuine cause for concern?Jaime A. Teixeira da Silva -2019 -Eubios Journal of Asian and International Bioethics 29 (3):99-108.
    The natural instinct for members of the Committee on Publication Ethics, which now number almost 12,200, as well as academia, is to assume that this organization works under strict and clearly defined ethical parameters, with a solid vision, and an independent mandate that is not influenced by power, think tanks, or partisan interests. Naturally, whistle-blowing and science shaming are not practices that one would usually associate with an ethics organization like COPE, because they involve ethically and morally questionable practices. Despite (...) this, ethical borders have become blurred between the objectives of Retraction Watch and PubPeer, two self-moderated science watchdogs that rely heavily on these questionable practices, in their efforts to grow and survive, and the values espoused by COPE. A Retraction Watch post, in which the former COPE Chair, Virginia Barbour, made a claim of apparent harassment, is the most striking example of the dangers when collaboration may take place between science-shaming websites, and an ethics organization, COPE. These bonds appear to have been in development for a number of years already, with the inclusion of Elizabeth Wager, the former COPE Chair, as a director of The Center for Science Integrity Inc., Retraction Watch’s parent organization. Retraction Watch was financed by, among other groups, the Laura and John Arnold Foundation, whose leader, John Arnold, an ex-Enron trader, declared a “war on bad science”, which may naturally include the destruction of aspects of science as well. Retraction Watch embraces several infamous pseudonymous personas under the broad umbrella of freedom of speech, liaising thereby with PubPeer. There is no doubt that errors in the literature need correcting, but this apparent connection with COPE raises questions about the basic ethical foundation of this relationship. Are scientists to embrace this bond between COPE and science watchdogs and pseudonymous whistle-blowers as the new normal in the correction of the scientific literature? This opinion piece puts forward arguments why the author believes that the ethical compass of COPE has become skewed. (shrink)
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  19.  563
    'Tortured phrases' in post-publication peer review of materials, computer and engineering sciences reveal linguistic-related editing problems.Jaime A. Teixeira da Silva -2022 -Publishing Research 1:6.
    A surge in post-publication activity related to editing, including by technical editors and copyeditors, is worthy of some discussion. One of these issues involves the issue of 'tortured phrases', which are bizarre terms and phrases in academic papers that replace standard English expressions or jargon. This phenomenon may reveal an attempt to avoid the detection of textual similarity or to masquerade plagiarism, and yet remain undetected by editors, peer reviewers and text editors. Potentially thousands of cases have already been discovered (...) and reported publicly on the post-publication platform PubPeer. In this opinion paper, 35 cases from ranked scholarly journals are presented, mainly the fields of materials, computer and engineering sciences. This collation serves to expand discussion about this integrity-related phenomenon and to increase educational awareness of the topic. (shrink)
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  20.  37
    Spousal and Kinship Co-Authorship Should be Declared to Avoid Conflicts of Interest.Jaime A. Teixeira da Silva &Horacio Rivera -2021 -Journal of Bioethical Inquiry 18 (3):379-381.
  21.  54
    Pay Walled Retraction Notices.Jaime A. Teixeira da Silva -2015 -Bangladesh Journal of Bioethics 6 (1):27-39.
    A retraction of a scientific paper is made, most often due to errors or lack of publishing ethics on the part of authors, or, on occasion, duplicate publication by a publisher in error. The retraction notice that accompanies the retraction is an extremely important document, because it is the only information that provides a background to the public regarding the reason why the manuscript was retracted. In most cases, if the retraction notice is truly transparent, it will contain a few (...) sentences that indicate the reason, and possibly also the authors’ responsible, among other facts. According to the Committee on Publication Ethics (COPE), retraction notices should be free to view, i.e. open access. This opinion piece exposes how several publishers are selling access to retraction notices, including COPE members, despite, in some cases, being paying COPE members. The business and academic ethics of such an action is thus called into question.Bangladesh Journal of Bioethics 2015 Vol.6 (1):27-39. (shrink)
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  22.  30
    Free editors and peers: squeezing the lemon dry.Jaime A. Teixeira da Silva &Vedran Katavić -2016 -Ethics and Bioethics (in Central Europe) 6 (3-4).
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  23.  7
    Letter Writing to Promote Philosophical Reflection About Medicine.Timothy Daly &Jaime A. Teixeira da Silva -2025 -Philosophy of Medicine 6 (1).
    Letters to the editor (LTEs) are a versatile short-format forum with unique characteristics to allow for cross-pollination of different kinds of philosophical reflection about medicine. Philosophical LTEs have both benefits and possible drawbacks. We draw on a case study to warn against misuse through “CV inflation,” where low-quality ideas may favor a scholar’s publishing metrics more than scholarly debate. Factual inaccuracies in LTEs have implications for authors, publishing, and indexing, and we argue for prudence by editors and restraint by scholars, (...) inviting them to focus on quality, rather than the quantity of LTEs published. When writing LTEs, rigor, readability, and relevance are needed. (shrink)
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  24.  27
    Ending the retraction stigma: Encouraging the reporting of errors in the biomedical record.Jaime A. Teixeira da Silva &Aceil Al-Khatib -2019 -Research Ethics 17 (2):251-259.
    Retractions are on the rise as a result of a surge in post-publication peer review and an emboldened anonymous whistle-blowing movement. Cognizant that their brand may be damaged as a result of not...
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  25.  62
    Multiple Authorship in Scientific Manuscripts: Ethical Challenges, Ghost and Guest/gift Authorship, and the Cultural/disciplinary Perspective.Judit Dobránszki &Jaime A. Teixeira da Silva -2016 -Science and Engineering Ethics 22 (5):1457-1472.
    Multiple authorship is the universal solution to multi-tasking in the sciences. Without a team, each with their own set of expertise, and each involved mostly in complementary ways, a research project will likely not advance quickly, or effectively. Consequently, there is a risk that research goals will not be met within a desired timeframe. Research teams that strictly scrutinize their modus operandi select and include a set of authors that have participated substantially in the physical undertaking of the research, in (...) its planning, or who have contributed intellectually to the ideas or the development of the manuscript. Authorship is not an issue that is taken lightly, and save for dishonest authors, it is an issue that is decided collectively by the authors, usually in sync with codes of conduct established by their research institutes or national ministries of education. Science, technology and medicine publishers have, through independent, or sometimes coordinated efforts, also established their own sets of guidelines regarding what constitutes valid authorship. However, these are, for the greater part, merely guidelines. A previous and recent analysis of authorship definitions indicates that the definitions in place regarding authorship and its validity by many leading STM publishers is neither uniform, nor standard, despite several of them claiming to follow the guidelines as set forward by the International Committee of Medical Journal Editors or ICMJE. This disparity extends itself to ghost and guest authorship, two key authorship-related issues that are examined in this paper to assess the extent of discrepancies among the same set of STM publishers and what possible influence they might have on publishing ethics. (shrink)
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  26.  31
    How hyped media and misleading editorials can influence impressions about Beall’s lists of “predatory” publications.Jaime A. Teixeira da Silva &Panagiotis Tsigaris -2019 -Journal of Information, Communication and Ethics in Society 17 (4):438-444.
    PurposeThe issue of “predatory” publishing and the scholarly value of journals that claim to operate within an academic framework, namely, by using peer review and editorial quality control, but do not, while attempting to extract open access or other publication-related fees, is an extremely important topic that affects academics around the globe. Until 2017, global academia relied on two now-defunct Jeffrey Beall “predatory” OA publishing blacklists to select their choice of publishing venue. This paper aims to explore how media has (...) played a role in spinning public impressions about this issue.Design/methodology/approachThe authors focus on a 2017New York Timesarticle by Gina Kolata, on a selected number of peer reviewed published papers on the topic of “predatory” publications and on an editorial by the Editor-in-Chief ofREM, a SciELO- and Scopus-indexed OA journal.FindingsThe Kolata article offers biased, inaccurate and potentially misleading information about the state of “predatory” publishing: it relies heavily on the assumption that the now-defunct Beall blacklists were accurate when in fact they are not; it relies on a paper published in a non-predatory non-OA journal that claimed incorrectly the existence of financial rewards by faculty members of a Canadian business school from “predatory” publications; it praised a sting operation that used methods of deception and falsification to achieve its conclusions. The authors show how misleading information by theNew York Timeswas transposed downstream via theREMeditorial.Originality/valueEducation of academics. (shrink)
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  27.  18
    The Retraction Watch retraction: how bad advice became worse advice for scientists and academics.Jaime A. Teixeira da Silva -2017 -Eubios Journal of Asian and International Bioethics 27 (4):135-140.
    In 2015, the Retraction Watch leadership, Adam Marcus and Ivan Oransky, retracted an article that they had written for The Lab Times in 2013. According to Marcus and Oransky, in the 2013 piece, they had offered “bad advice” to academics. In the 2013 piece, Marcus and Oransky suggested that when an error, actual or potential, was detected in a published paper, that they should first contact – by name or anonymously – the editor, then the author, and finally the research (...) institute, following Committee on Publication Ethics guidelines. They also recommended readers to copy Retraction Watch on their communications – most likely so that Retraction Watch could gather a scoop – suggesting even that by mentioning or copying Retraction Watch would twist the arm of the editor, and perhaps speed up – or influence – the journal’s action, or decision. Offering such bad, flawed and unscholarly advice, claiming boldly, without any citations “that cronyism can protect obvious fraud”, the 2013 Lab Times piece was a clear act of antiscience advice. Clearly recognizing their own bad advice, and flawed and misleading logic, but taking considerable time to do so, Adam Marcus and Ivan Oransky retracted their 2013 article in December of 2015, but replaced it with a substitute offering even worse advice, indicating to concerned academics to scrap their 2013 advice of contacting authors, editors and academic institutes, and opting instead for a potentially biased anonymous option, using a whistle-blower website, PubPeer. Marcus and Oransky failed to indicate any financial or other conflicts of interest in their Lab Times piece. This is important, because, as we now know, the marriage between these watchdogs has been in the pipe-line for years now, reaching public prominence in early 2016 during a meeting in UC Berkeley, and culminating in generous financial backing – in the hundreds of thousands of US$ – by the Laura and John Arnold Foundation, to both Retraction Watch and PubPeer. This commentary examines how the retraction of one badly written journalistic piece for lack of professionalism led to the emergence of an even worse article full of biases. Perspectives on how this could be interpreted, and what should happen, are provided. (shrink)
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  28.  31
    “Tortured Phrases” in Covid-19 Literature.Jaime A. Teixeira da Silva -2023 -Philosophy of Medicine 4 (1).
    Medical practitioners and healthcare workers rely on information accuracy in academic journals. Some Covid-19 papers contain “tortured phrases”, nonstandard English expressions, or imprecise or erroneous terms, that give the impression of jargon but are not. Most post-publication attention paid to Covid-19 literature has focused on the accuracy of biomedical aspects, the validity of claims, or the robustness of data, but little has been published on linguistic specificity. This paper highlights the existence of “tortured phrases” in select Covid-19 literature, arguing that (...) they could serve as a class of epistemic marker when evaluating the integrity of the scientific and biomedical literature. (shrink)
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  29.  40
    Sobre el abuso de sistemas de presentación en línea, falsos comentarios de pares Y cuentas creadas Por el editor.da SilvaJaime A. Teixeira -2016 -Persona y Bioética 20 (2).
    Many journals and publishers employ online submission systems to process manuscripts. In some cases, one “template” format exists, but it is then molded slightly to suit the specific needs of each journal, a decision made by the editor-in-chief or editors. In the past few years, there has been an increase in the number of cases in which OSSs have been abused, mostly by the authorship, either through the creation of fake identities or the use of false e-mail accounts. Although the (...) abusive or fraudulent authors are at fault in such cases, the fact that such cases remained undetected for so long is of concern. Moreover, the current OSSs are imperfect, have security issues and may not be able to detect false information, except through post-submission verification. Sting operations, which involve the submission of false manuscripts with false identities and false affiliations, are no less unethical, and those who abuse the publishing protocol deserve to be as reprimanded as those who abuse OSSs. Finally, I question the ethics of editors or publishers creating OSS accounts on behalf of reviewers prior to obtaining their explicit permission. doi: 10.5294/pebi.2016.20.2.3. (shrink)
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  30.  40
    Copy-Paste: 2-Click Step to Success and Productivity that Underlies Self-Plagiarism.Jaime A. Teixeira da Silva -2017 -Science and Engineering Ethics 23 (3):943-944.
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  31.  24
    “Data Not Shown” is No Longer Excusable in Biomedical Publishing.Jaime A. Teixeira da Silva -2018 -Science and Engineering Ethics 24 (2):811-813.
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  32.  36
    Reflection on the Fazlul Sarkar versus PubPeer (“John Doe”) Case.Jaime A. Teixeira da Silva -2018 -Science and Engineering Ethics 24 (1):323-325.
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  33.  61
    The Ethical and Academic Implications of the Jeffrey Beall (www.scholarlyoa.com) Blog Shutdown.Jaime A. Teixeira da Silva -2017 -Science and Engineering Ethics 26 (6):3465-3467.
    A very important event took place on January 15, 2017. On that day, the Jeffrey Beall blog was silently, and suddenly, shut down by Beall himself. A profoundly divisive and controversial site, the Beall blog represented an existential threat to those journals and publishers that were listed there. On the other hand, the Beall blog was a ray of hope to critics of bad publishing practices that a culture of public shaming was perhaps the only way to rout out those (...) journals—and their editors—and publishers who did not respect basic publishing ethical principles and intrinsic academic values. While members of the former group vilified Beall and his blog, members of the latter camp tried to elevate it to the level of policy. Split by extreme polar forces, for reasons still unknown to the public, Beall deliberately shut down his blog, causing some academic chaos among global scholars, including to the open access movement. (shrink)
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  34.  43
    The ClarivateTM Analytics acquisition of Publons – an evolution or commodification of peer review?Jaime A. Teixeira da Silva &Aceil Al-Khatib -2017 -Research Ethics 15 (3-4):1-11.
    Without peer reviewers, the entire scholarly publishing system as we currently know it would collapse. However, as it currently stands, publishing is an extremely exploitative system, relative to o...
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  35. Scientific Productivity and Retracted Literature of Authors with Kazakhstani Affiliations During 2013–2023.Kadyrzhan Smagulov &Jaime A. Teixeira da Silva -forthcoming -Journal of Academic Ethics:1-29.
    Kazakhstan, a post-Soviet country that began transitioning its research system from the Soviet model to a Western one, instituted an EU-like, meritocracy-based rewards system for publishing between 2009 and 2012. This resulted in a sharp rise in the number of publications between 2012 and 2020. To complement existing studies, Scopus and Web of Science were sourced (16 February – 1 March 2024) to assess the scientific productivity of affiliations in Kazakhstan, noting that growth rate slowed to 6.1% in 2021, 4% (...) in 2022, and 6.8% in 2023 (relative to an average annual growth rate of 35.3% in 2013–2020). In 2023, 20.4% of those publications were in MDPI journals. Separately, the Scopus-indexed retractions associated with Kazakhstani affiliations were assessed for 2013–2023. The vast majority (26/36) of retractions were related to fake peer review, with 14 in Elsevier’s Thinking Skills and Creativity, and the highest volume was in the 2016–2019 period. Of note, none of the 36 Scopus-indexed retracted papers had an associated institutional email. The emphasis on bibliometric indicators has led to an increase in manipulations and unethical actions by individual authors. These actions were driven by the desire to achieve personal and institutional goals, as well as imperfections in regulatory documents and delayed or hesitant actions of authorizing bodies. The findings of this study offer a unique contemporary perspective of scientific productivity in Kazakhstan while shedding light—through the prism of retractions, paper mills, and “predatory” publishing—on the ethics of the publication process. (shrink)
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  36.  48
    Judicial Capacity Building in Bosnia and Herzegovina: Understanding Legal Reform Beyond the Completion Strategy of the ICTY. [REVIEW]Lilian A. Barria &Steven D.Roper -2008 -Human Rights Review 9 (3):317-330.
    This article examines how international institutions serve to diffuse human rights norms and create judicial capacity building in post-conflict societies. Specifically, we examine how the International Criminal Tribunal for the former Yugoslavia (ICTY) and the Office of the High Representative have influenced the reform of domestic courts in Bosnia and Herzegovina (BiH). We place these reforms within the broader debate over restructuring the complex system of government in BiH. Since 2005, domestic courts in BiH have had jurisdiction over the following: (...) (1) Cases which were initially under the jurisdiction of the domestic courts but remanded to the ICTY and recently returned to BiH. (2) Cases which originated at the ICTY and have been transferred to the State Court, and (3) new cases which originated and remained in the domestic court system. We find that while human rights norms have been incorporated into the new legal code, the diffusion of these human rights norms has been inadequate because of the lack of judicial capacity building. While some courts in the capital enjoy significant resources, the vast majority of cases will be tried at provincial courts which are under-funded and unable to prosecute the significant number of cases. Moreover, the government structure of BiH has had a decidedly negative impact on the prosecution of these cases. Ultimately, the rule of law requires consistency of approach and funding to protect human rights throughout the state. (shrink)
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  37.  45
    How are Editors Selected, Recruited and Approved?Aceil Al-Khatib &Jaime A. Teixeira da Silva -2017 -Science and Engineering Ethics 23 (6):1801-1804.
    The editors of scholarly journals have a duty to uphold and promote the highest standards of ethical conduct of research. They also have a responsibility to maintain the integrity of the literature, and to promote transparency and honesty in reporting research findings. In the process of screening manuscripts they receive for possible publication, editors have the obligation to report infractions to the institutions of offending authors, and request an investigation. Since editors can reject a paper on ethical grounds, they can (...) be considered to be the guardians of ethics who should express high ethical standards in conducting and publishing their own research. An examination of several publishers’ websites reveals no such requirement or clear selection criteria for journal editors. Therefore, we aim to discuss the factors that publishers, in a broad sense, should consider when selecting editors for scholarly journals and believe that such criteria should be made public to ensure accountability. This would restore some of the eroding public trust in disseminated research, fortify confidence in the composition and qualification of members of an editorial board, and help to protect the reputations of publishers and editors. (shrink)
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  38.  48
    Fortifying the Corrective Nature of Post-publication Peer Review: Identifying Weaknesses, Use of Journal Clubs, and Rewarding Conscientious Behavior.Judit Dobránszki,Aceil Al-Khatib &Jaime A. Teixeira da Silva -2017 -Science and Engineering Ethics 23 (4):1213-1226.
    Most departments in any field of science that have a sound academic basis have discussion groups or journal clubs in which pertinent and relevant literature is frequently discussed, as a group. This paper shows how such discussions could help to fortify the post-publication peer review movement, and could thus fortify the value of traditional peer review, if their content and conclusions were made known to the wider academic community. Recently, there are some tools available for making PPPR viable, either as (...) signed or anonymous comments, or in a hybrid format. Thus, limited platforms are currently in place to accommodate and integrate PPPR as a supplement to traditional peer review, allowing for the open and public discussion of what is often publicly-funded science. This paper examines ways in which the opinions that emerge from journal clubs or discussion groups could help to fortify the integrity and reliability of science while increasing its accountability. A culture of reward for good and corrective behavior, rather than a culture that protects silence, would benefit science most. (shrink)
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  39.  53
    Establishing Sensible and Practical Guidelines for Desk Rejections.Helmar Bornemann-Cimenti,Vedran Katavić,Aceil Al-Khatib &Jaime A. Teixeira da Silva -2018 -Science and Engineering Ethics 24 (4):1347-1365.
    Publishing has become, in several respects, more challenging in recent years. Academics are faced with evolving ethics that appear to be more stringent in a bid to reduce scientific fraud, the emergence of science watchdogs that are now scrutinizing the published literature with critical eyes to hold academics, editors and publishers more accountable, and a barrage of checks and balances that are required between when a paper is submitted and eventually accepted, to ensure quality control. Scientists are often under increasing (...) pressure to produce papers in an increasingly stringent publishing environment. In such a climate, timing is everything, as is the efficiency of the process. Academics appreciate that rejections are part of the fabric of attempting to get a paper published, but they expect the reason to be clear, based on careful evaluation of their work, and not on superficial or unsubstantiated excuses. A desk rejection occurs when a paper gets rejected even before it has entered the peer review process. This paper examines the features of some desk rejections and offers some guidelines that would make desk rejections valid, fair and ethical. Academics who publish are under constant pressure to do so quickly, but effectively. They are dependent on the editors’ good judgment and the publisher’s procedures. Unfair, unsubstantiated, or tardy desk rejections disadvantage academics, and editors and publishers must be held accountable for wasting their time, resources, and patience. (shrink)
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  40.  59
    Clarivate Analytics: Continued Omnia vanitas Impact Factor Culture.Sylvain Bernès &Jaime A. Teixeira da Silva -2018 -Science and Engineering Ethics 24 (1):291-297.
    This opinion paper takes aim at an error made recently by Clarivate Analytics in which it sent out an email that congratulated academics for becoming exclusive members of academia’s most cited elite, the Highly Cited Researchers. However, that email was sent out to an undisclosed number of non-HCRs, who were offered an apology shortly after, through a bulk mail, which tried to down-play the importance of the error, all the while praising the true HCRs. When Clarivate Analytics senior management was (...) contacted, the company declined to offer an indication of the number of academics who had been contacted and erroneously awarded the HCR status. We believe that this regrettable blunder, together with the opacity offered by the company, fortify the corporate attitude about the value of the journal impact factor, and what it represents, namely a marketing tool that is falsely used to equate citations with quality, worth, or influence. The continued commercialization of metrics such as the JIF is at the heart of their use to assess the “quality” of a researcher, their work, or a journal, and contributes to a great extent to driving scientific activities towards a futile endeavor. (shrink)
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  41.  63
    Is Biomedical Research Protected from Predatory Reviewers?Aceil Al-Khatib &Jaime A. Teixeira da Silva -2019 -Science and Engineering Ethics 25 (1):293-321.
    Authors endure considerable hardship carrying out biomedical research, from generating ideas to completing their manuscripts and submitting their findings and data to a journal. When researchers submit to journals, they entrust their findings and ideas to editors and peer reviewers who are expected to respect the confidentiality of peer review. Inherent trust in peer review is built on the ethical conduct of authors, editors and reviewers, and on the respect of this confidentiality. If such confidentiality is breached by unethical reviewers (...) who might steal or plagiarize the authors’ ideas, researchers will lose trust in peer review and may resist submitting their findings to that journal. Science loses as a result, scientific and medical advances slow down, knowledge may become scarce, and it is unlikely that increasing bias in the literature will be detected or eliminated. In such a climate, society will ultimately be deprived from scientific and medical advances. Despite a rise in documented cases of abused peer review, there is still a relative lack of qualitative and quantitative studies on reviewer-related misconduct, most likely because evidence is difficult to come by. Our paper presents an assessment of editors’ and reviewers’ responsibilities in preserving the confidentiality of manuscripts during the peer review process, in response to a 2016 case of intellectual property theft by a reviewer. Our main objectives are to propose additional measures that would offer protection of authors’ intellectual ideas from predatory reviewers, and increase researchers’ awareness of the responsible reviewing of journal articles and reporting of biomedical research. (shrink)
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  42.  23
    An epistemological framework to appreciate the limits of predatory publishing.Konstantinos G. Papageorgiou,Jaime A. Teixeira da Silva &Demetrios E. Lekkas -2022 -Science and Philosophy 10 (1):7-19.
    The concept of “predatory” publishing, despite many studies of the phenomenon, continues to be unclear. This paper visualizes this topic through an epistemological perspective, claiming that these limitations emerge from an impressionism of idealization, the entrapment of cause and effect induced by a journalology-based perspective, and entrenched fantasized extraction, imagination and divination of what constitutes the truth, in essence, a path never followed by an _epistēmōn_. Reality, proof, verification, recorded observations and their interpretations have been pivoted to fit the theoretical (...) flavor of the day, an entity one day being predatory, the next not. Perhaps ephemeral judgements of predatory have been built on boundless disregard for common sense. Yet, these have led to scientists’ apotheosis, almost oblivious of the intangibility of “valid”, or the infinitesimal continuum of “predatory”. Perhaps their fault-ridden authoritarian argumentative disabilities is at fault. (shrink)
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  43.  35
    Job and Ecclesiastes as (postmodern?) wisdom in revolt.Leon A.Roper &Alphonso Groenewald -2013 -HTS Theological Studies 69 (1):1-8.
  44.  28
    Evaluating Fractional PID Control in a Nonlinear MIMO Model of a Hydroelectric Power Station.O. A. Rosas-Jaimes,G. A. Munoz-Hernandez,G. Mino-Aguilar,J. Castaneda-Camacho &C. A. Gracios-Marin -2019 -Complexity 2019:1-15.
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  45.  43
    Political Science Perspectives on Human Rights.Steven D.Roper &Lilian A. Barria -2009 -Human Rights Review 10 (3):305-308.
    This special issue of Human Rights Review is devoted to an exploration of the current human rights research agendas within the political science discipline. Research on human rights is truly an interdisciplinary quest in which various epistemologies can contribute to each other and form a larger dialogue concerning rights and wrongs. This special issue is devoted to an expansive understanding of the state of research on human rights in the political science discipline. One common theme throughout these contributions is the (...) need for a more nuanced conceptualization of human rights, tools to promote these rights and as social scientists, methodologies employed to study these rights. A second theme is the policy relevance that can be derived from our empirical analysis. This volume demonstrates that the integration of theoretically and normatively rich concepts, empirical social science, and policy relevance do not have to be mutually exclusive when studying human rights. (shrink)
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  46.  37
    Final report on the automated classification and retrieval project : MedSORT-1.Jaime G. Carbonell,David A. Evans,Dana S. Scott &Richmond H. Thomason -unknown
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  47.  18
    Explanation-based learning:A problem solving perspective.Steven Minton,Jaime G. Carbonell,Craig A. Knoblock,Daniel R. Kuokka,Oren Etzioni &Yolanda Gil -1989 -Artificial Intelligence 40 (1-3):63-118.
  48. Jaime Balmes (antología).Jaime Luciano Balmes -1942 - [Madrid]: Ediciones FE. Edited by Corts Grau, José & [From Old Catalog].
     
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  49.  16
    Contribution of Academic Satisfaction Judgments to Subjective Well-Being.Mauricio F. Zalazar-Jaime,Luciana S. Moretti &Leonardo A. Medrano -2022 -Frontiers in Psychology 13.
    The role of academic satisfaction on persistence and successful academic behavior has been the focus of research for decades. Nevertheless, driven by positive educational psychology, subjective well-being has been highlighted as another central feature in the academic path of students. Studies aimed at identifying the variables that contribute to explain different aspects of academic performance have been widely investigated, although studies aimed at identifying the determinants of subjective well-being are still limited. The present paper examined the contribution of AS judgments (...) on subjective well-being. To this end, it was hypothesized that SWB levels depend on the balance between positive/negative emotions and life satisfaction judgments. Furthermore, it was stipulated that AS has an indirect contribution on SWB, through life satisfaction, whereas the balance of emotions influences both AS judgments and life satisfaction. Using an analysis strategy based on structural equation modeling, the results indicated that the model fitted satisfactorily, explaining 32% of the variance of SWB. Particularly, it was observed that AS judgments contributed to life satisfaction judgments. Although no direct contribution of AS on SWB was reported, a total contribution partially mediated by life satisfaction judgments was revealed. These findings support the importance of academic satisfaction judgments, not only because of their importance in academic terms, but also because of their impact on university students’ subjective well-being and health. (shrink)
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  50. Creación e innovación como proceso evolutivo abierto en los mundos virtuales inmersivos.Iliana Hernández García &Raúl Niño Bernal Y.Jaime Hernández-García -2016 - In Iliana Hernández García,Estética de los mundos posibles: inmersión en la vida artificial, las artes y las prácticas urbanas. Bogotá, D. C.: Pontificia Universidad Javeriana-Bogotá.
     
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