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US20210355140A1 - Bifunctional degraders of hematopoietic progenitor kinase and therapeutic uses thereof - Google Patents

Bifunctional degraders of hematopoietic progenitor kinase and therapeutic uses thereof
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US20210355140A1
US20210355140A1US17/308,879US202117308879AUS2021355140A1US 20210355140 A1US20210355140 A1US 20210355140A1US 202117308879 AUS202117308879 AUS 202117308879AUS 2021355140 A1US2021355140 A1US 2021355140A1
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alkyl
independently selected
halogen
optionally substituted
alkoxy
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Hunter P. Shunatona
Galen Paul Shearn-Nance
Scott A. Mitchell
John Buell
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Gilead Sciences Inc
Nurix Therapeutics Inc
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Gilead Sciences Inc
Nurix Therapeutics Inc
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Abstract

The present disclosure provides bifunctional compounds as HPK1 degraders via ubiquitin proteosome pathway, and method for treating diseases modulated by HPK1.

Description

Claims (30)

Figure US20210355140A1-20211118-C00169
wherein:
m is 0, 1, 2, 3, or 4;
n is 0, 1, 2, 3, 4, 5, or 6;
A is a C3-7monocyclic cycloalkyl ring or a 4-6 membered monocyclic heterocyclyl ring having 1 or 2 heteroatoms independently selected from N, O, and S;
L is a linker moiety having a length of 2-24 continuously covalently bonded atoms selected from the group consisting of C, O, N and S;
LHM is a ligase harness moiety;
R11is
i) selected from the group consisting of —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy; or
ii) 4-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy,
iii) —S(O)2C1-6alkyl,
iv) —S(O)2C3-7monocyclic cycloalkyl,
v) C1-6alkyl optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl, or
vi) —C(O)R21;
each R12is independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy;
R21is
i) H,
ii) C3-7monocyclic or bridged bicyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, C1-3alkyl, and C1-3alkoxy, wherein the C1-3alkyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, and C1-3alkoxy,
iii) 4-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy,
iv) 5-6 membered monocyclic heteroaryl having 1-4 heteroatoms independently selected from N, O, and S, wherein the 5-6 membered monocyclic heteroaryl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, C1-3alkyl, and C1-3alkoxy,
v) —NH2,
vi) —NH(C1-6alkyl), wherein the C1-6alkyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, and C1-3alkoxy,
vii) —N(C1-6alkyl)2, wherein each C1-6alkyl can be the same or different and wherein each C1-6alkyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, and C1-3alkoxy,
viii) C1-6alkoxy optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C3-7monocyclic cycloalkyl, or
ix) C1-6alkyl optionally substituted with 1-3 groups independently selected from
a) —CN,
b) —OH,
c) halogen,
d) C1-3alkoxy,
e) C3-7monocyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, C1-3alkyl, and C1-3alkoxy,
f) 4-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy, and
g) —OC(O)C1-6alkyl optionally substituted with one —OH;
R3and R13are each H, or
R3and R13together form ═O;
X is —NR15R16, wherein R15and R16are independently
i) H,
ii) C3-7monocyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy,
iii) 4-7 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy,
iv) —C(O)C1-6alkyl, wherein the C1-6alkyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, and C1-3alkoxy, or
v) C1-6alkyl optionally substituted with 1-6 groups independently selected from
a) —CN,
b) —OH,
c) halogen,
d) C1-3alkoxy,
e) C3-7monocyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy, and
f) 5-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 5-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy; or
X is a 4-10 membered monocyclic, fused bicyclic, bridged bicyclic, or spirocyclic heterocyclyl having 1-3 heteroatoms independently selected from N, O, and S, wherein the 4-10 membered monocyclic, fused bicyclic, bridged bicyclic, or spirocyclic heterocyclyl is optionally substituted with 1-5 R18;
each R18is independently
i) —CN,
ii) a halogen,
iii) —OH,
iv) C1-6alkoxy optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl,
v) C1-6alkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl,
vi) —COOH, or
vii) —C(O)N(R22)2, wherein each R22is independently H or C1-6alkyl;
X1is N or CR17;
R4, R5, R6, R10and R17are each independently H, halogen, C1-3alkyl, or C1-3alkoxy;
R7is
i) H,
ii) C1-6alkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl, or
iii) C3-7monocyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy;
Z is —O—, —C(R8)2—, or —NR8—;
each R8is independently H or C1-3alkyl;
R9a, R9b, R9c, R9d, and R9eare independently
i) H,
ii) halogen,
iii) C1-6alkoxy optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C3-7monocyclic cycloalkyl,
iv) —NH2,
v) —NH(C1-6alkyl), wherein the C1-6alkyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, and C1-3alkoxy,
vi) —N(C1-6alkyl)2, wherein each C1-6alkyl can be the same or different, and wherein each C1-6alkyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, and C1-3alkoxy,
vii) —P(O)(C1-6alkyl)2, wherein each C1-6alkyl can be the same or different, and wherein each C1-6alkyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, and C1-3alkoxy,
viii) —S(O)2C1-6alkyl,
ix) —S(O)2N(R23)2, wherein each R23is independently H or C1-6alkyl,
x) C1-6alkyl optionally substituted with 1-3 groups independently selected from
a) —OH,
b) halogen,
c) C1-3alkoxy,
d) C3-7monocyclic cycloalkyl,
e) 5-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 5-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from oxo and C1-3alkyl, and
f) —NR20C(O)OC1-3alkyl, wherein R20is H or C1-3alkyl,
xi) C3-7monocyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy,
xii) 5-6 membered monocyclic heteroaryl having 1-4 heteroatoms independently selected from N, O, and S, wherein the 5-6 membered monocyclic heteroaryl is optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy,
xiii) 4-6 membered monocyclic heterocyclyl having 1-3 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy,
xiv) —COOH,
xv) —C(O)N(R19)2, or
xvi) —C1-3alkylene-C(O)N(R19)2,
wherein one or more of R9a, R9b, R9c, R9d, and R9eis —C(O)N(R19)2or —C1-3alkylene-C(O)N(R19)2; and
each R19is independently
i) H,
ii) —S(O)2C1-6alkyl,
iii) C1-6alkyl optionally substituted with 1-6 groups independently selected from —CN, —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl,
iv) C3-7monocyclic cycloalkyl optionally substituted with 1-6 groups independently selected from —CN, —OH, halogen, C1-6alkyl, and C1-6alkoxy, wherein the C1-6alkyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, and C1-3alkoxy, or
v) 4-6 membered monocyclic heterocyclyl having 1-3 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-6 groups independently selected from —CN, —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy.
Figure US20210355140A1-20211118-C00190
wherein:
m is 0, 1, 2, 3, 4 or 5;
n is 0, 1, 2, 3, 4,5, or 6;
B is a 4-10 membered monocyclic, fused bicyclic, bridged bicyclic, or spirocyclic heterocyclyl ring having 1-3 heteroatoms independently selected from N, O, and S;
L is a linker moiety having a length of 2-24 continuously covalently-bonded atoms selected from the group consisting of C, O, N and S;
LHM is a ligase harness moiety;
one of R1and R2is H, —CN, —OH, halogen, or C1-6alkyl, and the other of R1and R2is H, halogen, or C1-6alkyl, wherein each C1-6alkyl is optionally substituted with 1-3 groups independently selected from —OH and halogen, or
R1and R2together with the carbon to which they are attached form a C3-7monocyclic cycloalkyl or a 4-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the C3-7monocyclic cycloalkyl and the 4-6 membered monocyclic heterocyclyl are each optionally substituted with one R11and are each optionally substituted with 1-3 groups independently selected from —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy, or
R1and R2together form ═O;
R11is
i) 4-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy,
i) —S(O)2C1-6alkyl,
ii) —S(O)2C3-7monocyclic cycloalkyl,
iii) C1-6alkyl optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl, or
iv) —C(O)R21;
R21is
i) H,
ii) C3-7monocyclic or bridged bicyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, C1-3alkyl, and C1-3alkoxy, wherein the C1-3alkyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, and C1-3alkoxy,
iii) 4-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy,
iv) 5-6 membered monocyclic heteroaryl having 1-4 heteroatoms independently selected from N, O, and S, wherein the 5-6 membered monocyclic heteroaryl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, C1-3alkyl, and C1-3alkoxy,
v) —NH2,
vi) —NH(C1-6alkyl), wherein the C1-6alkyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, and C1-3alkoxy,
vii) —N(C1-6alkyl)2, wherein each C1-6alkyl can be the same or different and wherein each C1-6alkyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, and C1-3alkoxy,
viii) C1-6alkoxy optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C3-7monocyclic cycloalkyl, or
ix) C1-6alkyl optionally substituted with 1-3 groups independently selected from
a) —CN,
b) —OH,
c) halogen,
d) C1-3alkoxy,
e) C3-7monocyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, C1-3alkyl, and C1-3alkoxy,
f) 4-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy, and
g) —OC(O)C1-6alkyl optionally substituted with one —OH;
R3and R13are each H, or
R3and R13together form ═O;
each R12is independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy;
each R18is independently
i) —CN,
ii) a halogen,
iii) —OH,
iv) C1-6alkoxy optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl,
v) C1-6alkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl,
vi) —COOH, or
vii) —C(O)N(R22)2, wherein each R22is independently H or C1-6alkyl;
X1is N or CR17;
R4, R5, R6, R10and R17are each independently H, halogen, C1-3alkyl, or C1-3alkoxy;
R7is
i) H,
ii) C1-6alkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl, or
iii) C3-7monocyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy;
Z is —O—, —C(R8)2—, or —NR8
each R8is independently H or C1-3alkyl;
R9a, R9b, R9c, R9d, and R9eare independently
i) H,
ii) halogen,
iii) C1-6alkoxy optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C3-7monocyclic cycloalkyl,
iv) —NH2,
v) —NH(C1-6alkyl), wherein the C1-6alkyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, and C1-3alkoxy,
vi) —N(C1-6alkyl)2, wherein each C1-6alkyl can be the same or different, and wherein each C1-6alkyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, and C1-3alkoxy,
vii) —P(O)(C1-6alkyl)2, wherein each C1-6alkyl can be the same or different, and wherein each C1-6alkyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, and C1-3alkoxy,
viii) —S(O)2C1-6alkyl,
ix) —S(O)2N(R23)2, wherein each R23is independently H or C1-6alkyl,
x) C1-6alkyl optionally substituted with 1-3 groups independently selected from
a) —OH,
b) halogen,
c) C1-3alkoxy,
d) C3-7monocyclic cycloalkyl,
e) 5-6 membered monocyclic heterocyclyl having 1 or 2 heteroatoms independently selected from N, O, and S, wherein the 5-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from oxo and C1-3alkyl, and
f) —NR20C(O)OC1-3alkyl, wherein R20is H or C1-3alkyl,
xi) C3-7monocyclic cycloalkyl optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy,
xii) 5-6 membered monocyclic heteroaryl having 1-4 heteroatoms independently selected from N, O, and S, wherein the 5-6 membered monocyclic heteroaryl is optionally substituted with 1-3 groups independently selected from —OH, halogen, C1-3alkyl, and C1-3alkoxy,
xiii) 4-6 membered monocyclic heterocyclyl having 1-3 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-3 groups independently selected from —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy,
xiv) —COOH,
xv) —C(O)N(R19)2, or
xvi) —C1-3alkylene-C(O)N(R19)2,
wherein one or more of R9a, R9b, R9c, R9d, and R9eis —C(O)N(R19)2or —C1-3alkylene-C(O)N(R19)2; and
each R19is independently
i) H,
ii) —S(O)2C1-6alkyl,
iii) C1-6alkyl optionally substituted with 1-6 groups independently selected from —CN, —OH, halogen, C1-3alkoxy, and C3-7monocyclic cycloalkyl,
iv) C3-7monocyclic cycloalkyl optionally substituted with 1-6 groups independently selected from —CN, —OH, halogen, C1-6alkyl, and C1-6alkoxy, wherein the C1-6alkyl is optionally substituted with 1-3 groups independently selected from —CN, —OH, halogen, and C1-3alkoxy, or
v) 4-6 membered monocyclic heterocyclyl having 1-3 heteroatoms independently selected from N, O, and S, wherein the 4-6 membered monocyclic heterocyclyl is optionally substituted with 1-6 groups independently selected from —CN, —OH, halogen, oxo, C1-3alkyl, and C1-3alkoxy.
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