US20030148463A1 - Novel method for the production of anti-human antigen receptors and uses thereof - Google Patents

Abstract

Described is a method for the production of an anti-human antigen receptor that is low or not immunogenic in humans comprising the steps of selecting a combination of functionally rearranged VH and VL immunoglobulin chains wherein at least said VH chain is derived from essentially unprimed mature human B-lymphocytes or from essentially anergic human B cells and said VL chain in derived from a naturally occurring human B cell repertoire, said chains being expressed from a recombinant vector and using an in vitro display system for binding to a human antigen.

Description

• The present invention relates to a method for the production of an anti-human antigen receptor that is low or not immunogenic in humans comprising the steps of selecting a combination of functionally rearranged VH and VL immunoglobulin chains wherein at least said VH chain is derived from essentially unprimed mature human B-lymphocytes or from essentially anergic human B cells and said VL chain is derived from a naturally occurring human B cell repertoire, said chains being expressed from a recombinant vector and using an in vitro display system for binding to a human antigen.[0001]
• The present invention further relates to receptors that are low or not immunogenic in humans and directed to human antigens, said receptors being obtainable by the method of the invention. Said receptors are preferably antibodies or fragments thereof or immunoconjugates comprising the VH/VL chains of said antibody. In particular, the receptors of the invention are directed to human tumor antigens, preferably to the human tumor antigen 17-1A, also known as EpCAM, EGP-40 or GA 733-2. Finally, the present invention relates to kits useful for carrying out the method of the invention.[0002]
• The mammalian immune systems such as the human immune system select against immune competent cells and molecules that are specific for self-antigens. Dysregulation of the immune system in this regard may result in auto-immune diseases such as rheumatoid arthritis. In general, the surveillance of the immune system with regard to the autoreactive antibodies or T cells is therefore highly beneficial. However, there may be cases where it would be advantageous to have autoreactive antibodies that are directed to antigens expressed in the mammalian, and in particular, the human body. Such antigens are, for example, tumor associated antigens. For example, the human 17-1A or EpCAM antigen, a surface glycoprotein expressed by cells of simple epithelia and malignant tumors derived thereof, has been shown to be a rewarding target for monoclonal antibody therapy of cancer, especially in patients with minimal residual disease suffering from disseminated tumor cells that may cause later solid metastasis and thus impairs patients' prognosis. In patients with minimal residual colorectal cancer, a murine monoclonal antibody specific for the human 17-1A-antigen decreased the 5-year mortality rate by 30% compared to untreated patients, when applied systemically in five doses within four months after surgery of the primary tumor; in total each patient was treated with 900 mg of antibody (Riethmüiller, Lancet 343 (1994), 1177-1183). However, during the course of antibody treatment patients developed a strong antibody response against the murine immunoglobulin. These human anti-mouse antibodies (HAMAs) severely limit the continuous application of antibody therapies and increasingly reduce their efficacy. Moreover, preformed HAMAs induced by former antibody treatment or another contact with murine immunoglobulin can severely interfere with later antibody therapies.[0003]
• To prevent these problems, therapeutic antibodies with minimal immunogenicity would be preferable. To achieve this goal, it might be, for example, envisaged that therapeutic antibodies or antibody derivatives are completely human by their amino acid sequence and the immunogenic profile of the human antibody idiotype is minimized by using human Ig-variable regions likely to be tolerated by the human immune system.[0004]
• However, the generation of human antibodies against human antigens faces two major problems:[0005]
• (1) Hybridoma or other cell immortalisation techniques proved to be quite inefficient in generating human antibody producing cell lines compared to the murine hybridoma technology.[0006]
• (2) Auto-reactive antibodies are relatively efficiently depleted of naturally occurring antibody repertoires due to the mechanisms mediating self-tolerance.[0007]
• Human antibodies in general have become much more accessible since the availability of transgenic mice expressing human antibodies (Brüggemann, Immunol. Today 17 (1996), 391-397) and of the combinatorial antibody library and phage display technology allowing the in vitro combination of variable regions of Ig-heavy and light chains (VH and VL) and the in vitro selection of their antigen binding specificity (Winter, Annu. Rev. Immunol. 12 (1994), 433-455). By using the phage display method, rare events like one specific binding entity out of 10[0008]⁷to 10⁹different VL/VH- or VH/VL-pairs can easily be isolated; this is especially true when the repertoire of variable regions has been enriched for specific binding entities by using B-lymphocytes from immunized hosts as a source for repertoire cloning.
• Often, however, the frequency of specific binding entities is substantially lowered in naturally occuring antibody repertoires. This is particularly true for cases of antibodies binding to self-antigens. Random combinations of VL- and VH-regions from a self-tolerant host resulting in a combinatorial antibody library of conventional size (10[0009]⁷to 10⁹independent clones) most often are not sufficient for the successful in vitro selection of auto-reactive antibodies by the phage display method.
• One strategy to circumvent this problem is the use of very large combinatorial antibody libraries that compensate by the library size for the low frequency of auto-reactive antibodies in naturally occuring repertoires. Combinatorial antibody libraries exceeding a size of 10[0010]⁹independent clones, however, are difficult to obtain because of the current technical limit of the transformation efficiency for plasmid-DNA intoE.coli-cells.
• To avoid the self-tolerance mediated bias in naturally occuring antibody repertoires, that underrepresents auto-reactive antibodies and markedly decreases the chances of isolating antibodies specifically recognizing self-antigens, approaches using semisynthetic or fully synthetic VH- and/or VL-chain repertoires have been developed. For example, almost the complete repertoire of unrearranged human V-gene-segments has been cloned from genomic DNA and used for in vitro recombination of functional variable region genes, resembling V-J- or V-D-J-recombination in vivo (Hoogenboom, J. Mol. Biol. 227 (1992), 381-388; Nissim, EMBO J. 13 (1994) 692-698; Griffiths, EMBO J. 13 (1994), 3245-3260). Usually, the V-D-/D-J-junctional and the D-segment diversity mainly responsible for the extraordinary length and sequence variability of heavy chain CDR3 as well as the V-J-junctional diversity contributing to the sequence variability of light chain CDR3 is imitated by random sequences using degenerated oligonucleotides in fully synthetic and semisynthetic approaches (Hoogenboom (1994), supra; Nissim, supra; Griffiths, supra; Barbas, Proc. Natl. Acad. Sci. U.S.A. 89 (1992), 4457-4461). However, VL/VH- or VH/VL-pairs selected for binding to a human antigen from such semisynthetic or fully synthetic repertoires based on human V-gene sequences are at risk of forming immunogenic epitopes that may induce an undesired immune response in humans (Hoogenboom, TIBTECH 15 (1997), 62-70); especially the CDR3-regions derived from completely randomized sequence repertoires are predestined to form potentially immunogenic epitopes as they have never had to stand the human immune surveillance without being recognized as a foreign antigen resulting in subsequent elimination. This is equally true for human antibodies from transgenic mice expressing human antibodies as these immunoglobulin molecules have been selected for being tolerated by the murine but not the human immune system.[0011]
• Accordingly, the technical problem underlying the present invention was to provide a method that allows the production of receptors that are low or not immunogenic in humans and that can be used for targeting antigens in the human body. The solution to said technical problem is achieved by providing the embodiments characterized in the claims.[0012]
• Thus, the present invention relates to a method for the production of an anti-human antigen receptor that is low or not immunogenic in humans comprising the steps of selecting a combination of functionally rearranged VH and VL immunoglobulin chains wherein at least said VH chain is derived from essentially unprimed mature human B-lymphocytes or from essentially anergic human B cells and said VL chain is derived from a naturally occurring B cell repertoire, said chains being expressed from a recombinant vector and using an in vitro display system for binding to a human antigen.[0013]
• The method of the present invention is highly advantageous for providing receptors that can be used for targeting antigens in humans without being at all or to any significant extent immunogenic themselves. Such receptors can advantageously be used for treating a variety of diseases such as tumors or auto-immune diseases, graft rejection after transplantation, infectious diseases by targeting cellular receptors as well as allergic, inflammatory, endocrine and degenerative diseases by targeting key molecules involved in the pathological process.[0014]
• The VH/VL immunoglobulin chains of the receptors of the present invention can, of course, be further investigated with regard to their nucleic acid and amino acid sequences using techniques well-known in the art, see e.g. Sambrook (Molecular Cloning; A Laboratory Manual, 2nd Edition, Cold Spring Harbour Laboratory Press, Cold Spring Harbor, N.Y. (1989)). Once the nucleic acid sequence or the amino acid sequence have been determined, the receptors of the invention can also be produced by other methods, such as by synthetic or semi-synthetic methods yielding synthetic or semi-synthetic receptors, or in transgenic mice expressing human immunoglobulin receptors; carrying the features recited herein above and produced by such synthetic or semi-synthetic methods or in said transgenic mice are also included within the scope of the present invention.[0015]
• After binding of the receptor to the human antigen, the receptor can be further purified. For example, non-bound receptors which do not carry the antigen specificity may be removed by washing steps. The bound receptor may be eluted from the human antigen and further purified, wherein additional rounds of expression, binding and selection of the desired receptor may be used until the desired receptor and/or the corresponding recombinant vector have been isolated in pure form.[0016]
• The method of the present invention thus makes use of the preselection of Ig-variable regions by the human immune system. The receptors are derived from a repertoire selected in vitro from human combinatorial antibody libraries exclusively or preferentially made of the naturally occurring antibody repertoire expressed by essentially unprimed mature human B-lymphocytes or from essentially anergic human B-cells.[0017]
• However, the Ig variable domains may also be derived from a variety of other sources that represent these preselected populations of B cells.[0018]
• The scientific background with regard to the origin of the B cells functioning as a source of said VH or VL chains, may be explained as follows:[0019]
• Mature unprimed B-lymphocytes, expressing IgD and IgM as membrane antigen receptors enter primary follicles during their traffic to and between secondary lymphoid organs unless they have encountered multivalent self antigen resulting in clonal deletion or soluble monovalent self antigen rendering them anergic and short-lived due to exclusion from primary follicles.[0020]
• Contact of immature B-cells, that exclusively express IgM, with self antigen in the bone marrow results in clonal deletion or anergy depending on the antigen valency. Anergic B-cells, although expressing surface IgD, are unable to respond to the antigen through this receptor; without access to primary follicles and in the absence of T-cell help, these cells have a short half-life of only a few days.[0021]
• In contrast, mature unprimed B-lymphocytes that have not encounted self antigen and therefore have access to primary follicles have a long half-life of several weeks. Despite the described mechanisms mediating self-tolerance, these populations of long-lived mature unprimed B-lymphocytes still contain potentially self-reactive B-cells, that are, however, unlikely to find specific T-cell help due to T-cell tolerance and thus kept from proliferation and antibody secretion. It appears that B-cell non-responsiveness to many self-antigens that are present at low levels is of this type, affecting the helper T-cells but not the B-cells. In the present invention these long-lived, non-responsive, potentially self-reactive mature unprimed B-lymphocytes have been identified as the most promising naturally occuring human antibody repertoire for constructing combinatorial antibody libraries especially suited to select human antibodies to human antigens by, for example, the phage display method.[0022]
• This highly selected antibody repertoire used as a basis for the present invention mainly derived from B-cells with a long in vivo half-life and thus exposed to the human immune system for prolonged periods of time is expected to be markedly depleted of antibody molecules forming epitopes especially within the highly variable CDR3-regions, that are immunogenic for the human immune system. Therefore, human antibodies selected from this antibody repertoire are expected to have a lower immunogenic profile in humans than human antibodies selected from semisynthetic or fully synthetic human antibody libraries.[0023]
• Mature unprimed B-cells that are activated by contact with foreign antigen stop to express IgD and start clonal proliferation and differentiation into plasma cells secreting soluble immunoglobulin; early stages of the antibody response are dominated by IgM-antibodies, while later, IgG and IgA are the predominant isotypes, with IgE contributing a small but biologically important part of the antibody response.[0024]
• Unlike IgD-negative mature antigen-primed B-lymphocytes expressing IgM, IgG, IgA or IgE, IgD-positive mature unprimed B-cells have not yet undergone clonal proliferation, so that combinatorial IgD-libraries do not overrepresent antibody specificities that are currently or have been formerly involved in immune responses usually driven by foreign antigen, thus decreasing repertoire diversity and wasting library space for antibody candidates unlikely to bind self antigen. This is in clear contrast to the prior art recommending the use of human IgM combinatorial antibody libraries for the in vitro selection of human antibodies against human antigens from naturally occuring human antibody repertoires (Hoogenboom (1997), supra).[0025]
• In a preferred embodiment of the method of the invention, said antigen receptor is an immunoglobulin or a fragment thereof.[0026]
• The fragment of the immunoglobulin may be any fragment that is conventionally known in the art such as Fab or F(ab)[0027]₂fragments.
• In a particularly preferred embodiment of the method of the invention, said immunoglobulin fragment is an Fv-fragment.[0028]
• In a further preferred embodiment of the method of the invention, at least said VH and optionally said VL immunoglobulin chain are derived from a human IgD repertoire.[0029]
• This receptor and preferably antibody repertoire selected for low immunogenicity has been concluded to be best represented in a human IgD-antibody library. IgD is expressed as membrane antigen receptor together with surface IgM on mature unprimed B-lymphocytes that enter primary follicles during their traffic to and between secondary lymphoid organs unless they have encountered multivalent self antigen resulting in clonal deletion or soluble monovalent self antigen rendering them anergic and short lived due to exclusion form primary follicles. In addition to the antibody repertoire of mature unprimed B-lymphocytes, human IgD-libraries only further represent that of short-lived B-cells that have been rendered anergic in contact with soluble monovalent self antigen but are unlikely to contribute specific binders to human cell surface molecules resembling multivalent self-antigens that induce clonal deletion instead of B-cell anergy.[0030]
• In a further preferred embodiment of the method of the invention, said in vitro display system is a phage display system.[0031]
• The phage display system has, in the past, conveniently been used for the selection of a variety of peptides and proteins that bind to specific targets. On the basis of this knowledge, the immunoglobulin VH and VL chains can conveniently be cloned into vectors that also comprise molecules useful for phage display systems. Such molecules and vectors, respectively, are well-known in the art (Winter, supra; Barbas, METHODS: A Companion to Methods in Enzymology 2 (1991), 119-124) and need not be explained here in more detail.[0032]
• In a further preferred embodiment of the method of the invention, said combination of rearranged chains is expressed from one or more different libraries.[0033]
• This embodiment is particularly preferred, if a VH or VL chain is known that binds to a specific target and the corresponding second V chain that reconstitutes or improves binding is selected.[0034]
• In a further preferred embodiment of the method of the invention, said human antigen is a tumor antigen.[0035]
• If the human antigen is a tumor antigen, said antigen is preferably expressed on the surface of said tumor. In this case, the VH and VL chains are advantageously coupled to a toxine. The coupling can be effected on the nucleic acid level by genetic engineering or at the protein level by, for example, chemical coupling. It is particularly preferred that said tumor antigen is the 17-1A antigen.[0036]
• In a further particularly preferred embodiment of the method of the invention, said VH chain comprises one of the two sequences shown in FIG. 7 ([0037]nucleotides 1 to 381) and FIG. 8 (nucleotides 1 to 339) and/or said VL chain comprises one of the two following sequences shown in FIG. 6 (nucleotides 1 to 321) and FIG. 9 (nucleotides 1 to 321). Receptors with these specific VH and VL regions, wherein said VL region can be combined with both VH regions, are the first human antibodies that are specific for the human 17-1A antigen.
• In a further preferred embodiment of the method of the invention, said selection step involves[0038]
• (i) binding of the display vehicle expressing an antigen receptor[0039]
• (a) on immobilized target antigen or fragments thereof;[0040]
• (b) on optionally labeled cells expressing the target antigen or fragments thereof; or[0041]
• (c) to soluble, preferably labeled target antigen or fragments thereof;[0042]
• (ii) washing off non-specifically binding display vehicle (a and b) and subsequent elution of specifically binding display vehicle by non-specific (e.g. low pH buffer) or specific means (e.g. target antigen specific antibody) or[0043]
• (iii) positive enrichment of target antigen bound display vehicle (b and c) from target antigen solution or from suspensions of cells expressing the target antigen for example using magnetic beads binding to labeled target antigen or labeled cells expressing the target antigen respectively; thus isolated display vehicles including their antigen receptors optionally being multiplied by replication and subjected to further rounds of in vitro selection as described.[0044]
• In a further preferred embodiment of the method of the invention, prior to said selection step either said VH or said VL chain is selected for binding to said antigen together with a surrogate V chain.[0045]
• This two-step procedure can be employed using a target antigen specific template antibody from a different species, for example a murine monoclonal antibody against the human target antigen. First, a human VL- or VH-repertoire is combined with a single surrogate VH- or VL-chain from the murine template antibody, displayed, e.g., on filamentous phage and selected in vitro for antigen binding. Thus, the complete library size is available exclusively for the human VL- or VH-repertoire and candidate human VL- or VH-chains can be isolated that are capable of contributing to specific binding of the human target antigen. In a second step, the surrogate variable region of the template antibody is replaced by the corresponding human variable region repertoire followed by a second round of in vitro selection; again, the complete library size is exclusively available for a single VH- or VL-region repertoire, thus enabling much more VL- and VH-region candidates to be screened for antigen binding under conditions of limited library size by the two-step procedure than by a single-step procedure.[0046]
• For cloning of DNA-sequences encoding the variable regions of human antibodies that specifically bind to the human 17-1A-antigen, this two-step selection procedure for screening human IgD-combinatorial antibody libraries by the phage display method was advantageously employed. First, the Fd-heavy chain segment (VH+CH1) of the murine monoclonal antibody M79 (Göttlinger, Int. J. Cancer 38 (1986), 47-53) that specifically binds to the human 17-1A-antigen was combined with a human kappa- and lambda-light chain repertoire respectively. The resulting libraries were displayed on filamentous phage and selected in vitro by several rounds of panning on immobilized recombinant human 17-1A-antigen. Soluble Fab-fragments were expressed from several clones after each round of panning and screened by ELISA for antigen binding. Each of the strong binding entities enriched during the panning procedure proved to contain the same human kappa-light chain as confirmed by sequence analysis. This human light chain furtheron called K8 was then combined with a human IgD-heavy chain library, that was again displayed on filamentous phage and selected in vitro by several rounds of panning on immobilized recombinant human 17-1A-antigen. Several Fab-fragments were expressed from several clones after each round of panning and again screened by ELISA for antigen binding. Sequence analysis of the binding entities enriched during the panning procedure revealed two different heavy chain-variable regions called D4.5 and D7.2 each of which combines with the K8-light chain to form different human antigen binding sites with specificity for the human 17-1A-antigen. The human light and heavy chain repertoires were cloned from several preparations of total RNA isolated from human blood and bone marrow samples of several donors by using kappa or lambda light chain specific as well as IgD-heavy chain specific RT-PCR. As it is impossible to selectively amplify the light chain repertoire that is combined with IgD-heavy chains in vivo, unless IgD-positive B-cells are purified for RNA-preparation, the light chain libraries used are not limited to the antibody repertoire of mature unprimed or anergic B-lymphocytes. However, due to the predominance of the heavy chain in antigen recognition, this does not substantially undermine the advantages of the IgD-repertoire for selecting human antibodies to self-antigens. Further and most importantly due to the exposure to the human immune system selection of such light chains still guarantees a low immunogenic profile in humans.[0047]
• In a further particularly preferred embodiment of the method of the invention, said surrogate chain is a mouse VH or VL chain.[0048]
• In a further preferred embodiment of the method of the invention, said selection of a suitable combination involves[0049]
• (a) testing one and the same VH chain in combination with a variety of different VL chains for binding to said human antigen; or[0050]
• (b) testing one and the same VL chain in combination with a variety of different VH chains for binding to said human antigen.[0051]
• This embodiment is advantageously employed again, if either the VL or the VH chains are known to specifically interact with the human target molecule. Then, an appropriate second chain can be selected on the basis of preferably an improved binding to the target molecule.[0052]
• In a further preferred embodiment of the method of the invention, said method comprises the steps of obtaining, after selection, the human VH and VL chains or the corresponding nucleic acids and fusing said chains to the same or other VH or VL chains, to immunoglobulin constant regions of heavy (CH) or light chains (CL) or parts thereof or to other biologically active molecules such as peptides, proteins, nucleic acids, small organic compounds, hormones, neural transmitters, peptidomimics, PNAs (Milner, Nature Medicine 1 (1995), 879-880; Hupp, Cell 83 (1995), 237-245; Gibbs and Oliff, Cell 79 (1994), 193-198). The other functional molecule may be either physically linked by, e.g., chemical means to VH and VL chains or may be fused by recombinant DNA techniques well known in the art. This embodiment of the invention is particularly useful for developing specific drugs that may be used to target desired antigens in the human body. For example, if tumor antigens are targeted, the VH and VL chains may, at the nucleic acid or amino acid level, be fused to a toxin moiety, thus resulting in an immunotoxin, to the extracellular portion of a cellular receptor or a soluble cytokine or parts thereof respectively, thus resulting in constructs enhancing the anti-tumor immune response or to an antibody-Fv-fragment thus resulting in a bispecific antibody derivative.[0053]
• In a further particularly preferred embodiment of the method of the invention, said constant region chains are derived from human IgG1 or IgG3.[0054]
• The constant region chains of human IgG1 or IgG3 are preferentially used if cells expressing the target antigen should be destroyed in the human body. It is well-known in the art that these IgG-subclasses efficiently mediate antibody dependent cellular cytotoxicity (ADCC) and contribute to the destruction of cells recognized and bound by these antibody subclasses.[0055]
• In a further preferred embodiment of the method of the invention, said VH and/or VL chains are coupled with non-proteinous pharmaceuticals preferrably of low molecular weight such as radioisotopes or substances used for chemotherapy, thus resulting in a more specific in vivo targeting of said pharmaceuticals.[0056]
• In a further preferred embodiment of the method of the invention, said VH or VL chains are expressed from nucleic acid sequences that are the result of the RT-PCR amplification of mRNA derived from essentially unprimed mature human B-lymphocytes or essentially anergic human B-cells.[0057]
• It is preferred to amplify the VH or VL chains by RT-PCR once the suitable source thereof has been identified and isolated. It is preferred to use the mRNA of nucleated cells from human bone marrow or more preferable from human blood for amplifying VH or VL chains by RT-PCR as these two tissue compartments are the most easily accessible B-cell sources in humans. It is further preferred to isolate anergic B-cells or more preferable mature unprimed B-lymphocytes from the nucleated cells of said tissue compartments by using e.g. magnetic beads or flow cytometry based cell sorting prior to RNA-preparation. This procedure guarantees that both, VH and VL chains amplified by RT-PCR, are derived from the preferred B-cell population. Alternatively, if mRNA of the whole fraction of nucleated cells from said tissue compartments is used to amplify VH or VL chains by RT-PCR, it is preferable to amplify the VH-region as half of the heavy chain Fd-segment (VH-CH1) of human IgD by using an IgD-specific 3′ PCR-primer e.g. that enlisted in table 1 which exclusively gives raise to PCR-products from the human IgD-heavy chain, only expressed in mature unprimed human B-lymphocytes and in anergic human B-cells.[0058]
• In a further preferred embodiment of the method of the invention, the anti-human antigen receptor which is low or not immunogenic in humans, comprises a combination of functionally rearranged VH and VL chains preferably from essentially unprimed mature human B-lymphocytes or essentially anergic human B-cells and obtainable by the method according to the invention described above. The advantages of the antibody of the invention have been outlined herein above. It has to be emphasized that corresponding antibodies directed against human antigens and derived from human sources, said antibodies having thus a low or no immunogenicity in humans, have so far not been isolated in the art. Accordingly, the antibodies of the invention are the starting point of a whole new development of antibodies that may be used in various fields of medicine and pharmacy.[0059]
• In an additional preferred embodiment of the method of the invention, the receptor is an antibody or a fragment thereof.[0060]
• In another preferred embodiment of the method of the invention, the receptor is specific for a human tumor antigen, most preferably for the human 17-1A antigen. The invention furthermore relates to a receptor wherein said VH chain comprises one of the sequences shown in FIG. 7 ([0061]nucleotides 1 to 381) and FIG. 8 (nucleotides 1 to 339) and/or said VL chain comprises one of the two following sequences shown in FIG. 6 (nucleotides 1 to 321) and FIG. 9 (nucleotides 1 to 321).
• Furthermore, the invention relates to a VH chain or a part thereof comprised in the receptor of the invention.[0062]
• The invention also relates to a VL chain or a part thereof comprised in the receptor of the invention.[0063]
• In a further particularly preferred embodiment of the method of the invention, said part of said VH chain is the CDR3 domain.[0064]
• Furthermore, the invention relates to a kit comprising a combination of functionally rearranged VH and VL immunoglobulin chains wherein at least one of the VH and VL chains are derived from essentially unprimed mature human B lymphocytes or from essentially anergic human B cells, said chains being expressible from recombinant vectors of an in vitro display system.[0065]
• Said kit is advantageously used in carrying out the method of the invention and thus obtaining receptors of desired specificity.[0066]
• Preferably, in said kit, said in vitro display system is a phage display system. The invention relates further to an antibody characterized in that it is derived from human sequences and is specific for the human 17-1A antigen.[0067]
• With the method of the invention, for the first time a human antibody which is specific for the human 17-1A antigen has been developed. As has been pointed out before, this development was no trivial task, since human antibodies against human tumor associated antigens are usually subjected to mechanisms mediating self tolerance of the immune system, thus resulting in the elimination of B-lymphocytes expressing autoreactive antibodies in vivo. Among the known tumor associated antigens 17-1A is by far more ubiquitously expressed on a broad range of normal epithelial tissues than other tumor antigens, in addition to its expression on epithelial tumors. Therefore, the 17-1A-antigen is currently regarded to represent a pan-epithelial antigen rather than a tumor antigen, which it was thought to be at the time of its first description. In comparison, other so called tumor antigens found on epithelial tumors, like erb-B2 (Her 2/neu), Muc-1 (PEM) or the Thompson-Friedreich-antigen usually show a much more restricted expression pattern on normal epithelial tissues. Thus, the selective force of self tolerance against B-lymphocytes expressing 17-1A reactive antibodies even with low affinity is expected to be exceptionally high, since it appears nearly impossible for such B-cells to avoid encounters with the 17-1A antigen for longer periods of time, due to the ubiquity of this antigen. Therefore, it was surprisingly found in accordance with the present invention, that 17-1A specific antibodies or at least the corresponding heavy chains can be isolated from the antibody repertoire of human B-cells such as e.g. mature unprimed B-lymphocytes. These B-cells are known to have a long in vivo half life and have already managed to avoid depletion prior to their maturation despite the presence of the 17-1A antigen even at the site of maturation; B-cell anergy does not occur in case of the 17-1A antigen as this type of B-cell tolerance is only induced by soluble self antigen. Only long-lived B-cells that managed to survive in spite of their potential 17-1A reactivity represent a repertoire of human immunoglobulin variable regions, that is likely to be well tolerated by the human immune system when used for the construction of human antibodies and antibody derivatives designed to be repeatedly administered systemically to human beings since it has already been screened for and subsequently eliminated from immunogenic sequences by the surveillance function of the immune system. Therefore, the present invention also relates to human antibodies specific for the 17-1A antigen and suited for repeated in vivo application regardless of the method by which they are obtained as human antibody sequences with said high in vivo compatibility are highly expected to be also found in the B-cell repertoire of healthy human beings, for example, by the method of the invention. Accordingly, for the first time now a human antibody has been developed that can advantageously be used in the monitoring and/or destruction of tumor cells carrying the 17-1A antigen. Thus, the antibody of the invention is advantageously low or non-immunogenic in humans. In a preferred embodiment, said antibody which is obtainable according to a method as described hereinabove. In another preferred embodiment, the antibody of the invention recognizes an epitope of the extracellulary domain of the 17-1A antigen preferably comprising at least one amino acid sequence of peptide Nos. 8, 11, 13, 14, 59, 60, 77 and 79. Preferably, the VH chain of the antibody of the invention comprises at least one CDR of one of the following two sequences shown in FIG. 7 ([0068]nucleotides 1 to 381) and FIG. 8 (nucleotides 1 to 339) and/or the VL chain comprises at least one CDR of the following two sequences shown in FIG. 6 (nucleotides 1 to 321) and FIG. 9 (nucleotides 1 to 321). Particularly preferred is an antibody, wherein said VH chain comprises one of the two following sequences shown in FIG. 7 (nucleotides 1 to 381) and FIG. 8 (nucleotides 1 to 339) and/or said VL chain comprises one of the following two sequences shown in FIG. 6 (nucleotides 1 to 321) and FIG. 9 (nucleotides 1 to 321).
• This receptor and preferably antibody repertoire selected for low immunogenicity has been concluded to be best represented in a human IgD-antibody library. IgD is expressed as membrane antigen receptor together with surface IgM on mature unprimed B-lymphocytes that enter primary follicles during their traffic to and between secondary lymphoid organs unless they have encountered multivalent self antigen resulting in clonal deletion or soluble monovalent self antigen rendering them anergic and short lived due to exclusion form primary follicles. Except mature unprimed B-lymphocytes human IgD-libraries only represent the antibody repertoire of short-lived B-cells that have been rendered anergic in contact with soluble monovalent self antigen but are unlikely to contribute specific binding entities to human cell surface molecules resembling multivalent self-antigens that induce clonal deletion instead of B-cell anergy.[0069]
• Moreover, the present invention relates to a pharmaceutical composition comprising at least one of the aforementioned receptors or parts thereof of the invention, either alone or in combination, and optionally a pharmaceutically acceptable carrier or excipient. Examples of suitable pharmaceutical carriers are well known in the art and include phosphate buffered saline solutions, water, emulsions, such as oil/water emulsions, various types of wetting agents, sterile solutions etc. Compositions comprising such carriers can be formulated by well known conventional methods. These pharmaceutical compositions can be administered to the subject at a suitable dose. Administration of the suitable compositions may be effected by different ways, e.g. by intravenous, intraperitoneal, subcutaneous, intramuscular, topical or intradermal administration.[0070]
• Thus, the invention also relates to the use of a receptor or parts thereof produced according to the method of the invention for the preparation of a pharmaceutical composition for treating, preventing and/or delaying of a tumor, in a subject, preferably wherein the tumor is of epithelial origin.[0071]
• The figures show:[0072]
• FIG. 1: Cloning site of pComb3H with important restriction sites. The following abbreviations were used: P, promotor; VL, variable light chain domain; CL, constant light chain domain; VH, variable heavy chain domain; CH1, constant[0073]heavy chain domain 1; L½, procaryotic leader sequences. The domain designated as gene III in pComb3H encodes for the non-infectious part of the gene III-product of filamentous phages as e.g. VCSM13.
• FIG. 2: Scheme of the pComb3H-plasmid and the fully expressed M13-phage. On pComb3H the organization of leader (L) ompA, light chain, leader (L) pelB, heavy chain and gene III is shown. The fully expressed M13-phage displays on its surface the phenotype of a certain Fab antibody-fragment consisting of a light chain and the Fd-segment (VH+CH1) of a heavy chain linked to the non-infectious part of the gene III product and contains the corresponding genotype as single-stranded DNA encoding the heavy and light chain of the displayed Fab-fragment. The infectious gene III-protein is provided by the helper phage VCSM13.[0074]
• FIG. 3: ELISA of soluble Fab fragments. Periplasma preparations of soluble Fab fragments each containing the Fd segment of chimerized M79 and a single human kappa chain per clone. ELISA plates were incubated overnight with soluble 17-1A-antigen. Detection of bound Fab-antibody fragments was carried out with a peroxidase-conjugated polyclonal anti-human immunoglobulin antibody. The ELISA was finally developed by adding an ABTS-substrate solution (ABTS=2,2 Azino-bis(3-Ethylbenzthiazoline-6-Sulfonic Acid)) and the substrate turnover measured at a wavelength of 405 nm (y-axis). Clones are presented on the x-axis, the first number indicates the round of panning, the second one is the clone number. Clones 1.5-9 have a combination of chimeric M79 Fd segment with one random kappa chain and represent negative controls.[0075]
• FIG. 4: ELISA of soluble Fab fragments. Periplasma preparations of soluble Fab fragments each containing the k8 light chain and a single human Ig delta chain Fd-segment. ELISA plates were incubated overnight with soluble 17-1A-antigen. Detection of bound Fab-antibody fragments was carried out with a biotinylated polyclonal anti-human kappa light chain antibody followed by peroxidase-conjugated streptavidine. The ELISA was finally developed by adding an ABTS-substrate solution (ABTS=2,2 Azino-bis(3-Ethylbenzthiazolinc-6-Sulfonic Acid)) and the substrate turnover measured at a wavelength of 405 nm (y-axis). Clones are presented on the x-axis, the first number indicates the round of panning, the second one is the clone number. Clones 1.2-6 have a combination of k8 light chain with one random Ig delta heavy chain Fd-segment and represent negative controls.[0076]
• FIG. 5: ELISA of soluble Fab fragments. Periplasma preparations of soluble Fab fragments each containing the D4.5 Fd segment and a single human kappa chain per clone. ELISA plates were incubated overnight with soluble 17-1A-antigen. Detection of bound Fab-antibody fragments was carried out with a biotinylated polyclonal anti-human kappa light chain antibody followed by peroxidase-conjugated streptavidine. The ELISA was finally developed by adding an ABTS-substrate solution (ABTS=2,2 Azino-bis(3-Ethylbenzthiazoline-6-Sulfonic Acid)) and the substrate turnover measured at a wavelength of 405 nm (y-axis). Clones are presented on the x-axis, the first number indicates the round of panning, the second one is the clone number; S. is the abbreviation for clones prior to the first round of selection. Clones S. 1-3 have a combination of k8 light chain with one random Ig delta heavy chain Fd-segment and represent negative controls.[0077]
• FIG. 6: DNA- and protein-sequence of the[0078]human kappa 8 light chain variable region. Numbers indicate the nucleotide (nt) positions, amino acids are presented in single letter code. CDR1 includes nt 70 to nt 102, CDR2 nt 148 to nt 168, CDR3 nt 256 to nt 294.
• FIG. 7: DNA-sequence of the human D4.5 heavy chain variable region. Numbers indicate the nucleotide (nt) positions, amino acids are presented in the single letter code. CDR1 includes nt 91 to nt 105, CDR2 nt 148 to nt 198, CDR3 nt 292 nt 351. The border between the heavy chain variable region and the CH1 domain of the Ig delta constant region is located between nt 382 and nt 383 with the delta constant region protein sequence starting at nt 384.[0079]
• FIG. 8: DNA-sequence of the human D7.2 heavy chain variable region. Numbers indicate the nucleotide (nt) positions, amino acids are presented in the single letter code. CDR1 includes nt 91 to nt 105, CDR2 nt 148 to nt 198, CDR3 nt 292 nt 309. The border between the heavy chain variable region and the CH1 domain of the Ig delta constant region is located between nt 340 and nt 341 with the delta constant region protein sequence starting at nt 343.[0080]
• FIG. 9: DNA- and protein-sequence of the human kappa 5.1 light chain variable region. Numbers indicate the nucleotide (nt) positions, amino acids are presented in single letter code. CDR1 includes nt 70 to nt 102, CDR2 nt 148 to nt 168, CDR3 nt 265 to nt 294.[0081]
• FIG. 10: Flow cytometry analysis of Fab antibody-fragments and control antibody M79 on 17-1A positive Kato cells for testing binding activity of a periplasma preparation containing the k8-D4.5-Fab fragment. Kato-cells were incubated with I) irrelevant periplasma preparation, II) 10 μg/ml chimeric (bivalent !) M79, III) k8-D4.5 periplasma preparation an IV) 1:10 dilution of K8-D4.5 periplasma preparation. Relative cell numbers are shown on the y-axis, relative fluorescense intensity is shown on the x-axis.[0082]
• FIG. 11: Flow cytometry analysis of Fab antibody-fragments and complete antibodies on 17-IA positive Kato cells, 17-1A transfected and untransfected CHO-cells, respectively, for testing binding activity of periplasma preparations (pp) containing the k8-D4.5-, the k5.1-D4.5- or an irrelevant k-D4.5-Fab-fragment. Kato-cells were incubated I) with irrelevant pp (broken line) or k5.1-D4.5-pp (solid line), or II) with 20 μg/ml M79-antibody (solid line) or the corresponding murine IgG2a isotype control (broken line). 17-1A-transfected CHO-cells were incubated III) with irrelevant pp (broken line) or k5.1-D4.5-pp (solid line), IV) with irrelevant pp (broken line) or k8-D4.5-pp (solid line), or V) with 20 μg/ml M79-antibody (solid line) or the corresponding murine IgG2a isotype control (broken line). In III), IV) and V) incubation and detection of relevant pp (k5.1-D4.5Fab-pp and k8-D4.5-Fab-pp, respectively) and the murine antibody M79 was also carried out on untransfected CHO-cells (dotted lines). Relative cell numbers are shown on the y-axis, relative fluorescense intensity is shown on the x-axis.[0083]
• FIG. 12: Cloning site of pEF-ADA with important restriction sites. The following abbreviations were used: P, promotor; VL, variable light chain domain; CL, constant light chain; Leuc, eucaryotic leader sequence.[0084]
• FIG. 13: Cloning site of pEF-DHFR with important restriction sites. The following abbreviations were used: P, promotor; VH, variable heavy chain domain; CH1/2/3, constant[0085]heavy chain domain 1/2/3; Leuc, eucaryotic leader sequence.
• FIG. 14: SDS-PAGE of preparations of the human antibody H79. Approx. 10 μg of each antibody were run on a 12.5% denaturating Polyacrylamid-gel under reducing and non-reducing conditions and stained with coomassie blue.[0086]
• Lane 1: Marker (MW [kDa] of single bands marked on the left side of the gel)[0087]
• Lane 2: H79 human IgG1-version (non-reducing)[0088]
• Lane 3: H79 human IgG1-version under reducing conditions[0089]
• Lane 4: H79 murine IgG1-version (non-reducing)[0090]
• Lane 5: H79 murine IgG1-version under reducing conditions[0091]
• FIG. 15: SDS-PAGE of preparations of the human antibodies H79 and HD70.10 μg of H79 and 3.5 μg HD70 were run on 12.5% denaturating Polyacrylamid-gel under non-reducing (gel 1) and reducing (gel 2) conditions and stained with coomassie blue.[0092]
• Gel 1: Lane 1: Marker (MW [kDa] of single bands marked on the left side of the gel) Lane 2: H79 human IgG1-version (non-reducing) Lane 3: HD70 human IgG1-version (non-reducing)[0093]
• Gel 2: Lane 4: Marker (MW [kDa] of single bands marked on the left side of the gel) Lane 5: H79 human IgG1-version under reducing conditions Lane 6: HD70 human IgG1-version under reducing conditions[0094]
• FIG. 16: Flow cytometry analysis of 17-1A positive Kato cells for testing binding activity of purified H79 human IgG1 as well as purified H79 murine IgG1. Kato-cells were incubated with IgG isotype-controls (10 μg/ml human IgG1 and murine IgG1, respectively), positive controls (M79 and chimerized M74 at 10 μg/ml, respectively; (both 17-1A specific) and with H79 human IgG1 or H79 murine IgG1 (10 μg/ml and 1 μg/ml each). Relative cell numbers are shown on the y-axis, relative fluorescense intensity is shown on the x-axis.[0095]
• FIG. 17: Flow cytometry analysis of antibodies (conzentration: 20 μg/ml each) on 17-1A positive Kato cells, 17-1A-transfected and non-transfected CHO-cells for testing binding activity of the purified antibodies H79 human IgG1, H79 murine IgG1, HD70, D7.2, M79, Panorex and isotype controls (human IgG1, murine IgG1 and 2a). I) H79 human IgG1 (solid line) and human IgG1 isotype control (broken line) on Kato-cells, II) H79 murine IgG1 (solid line) and murine IgG1 isotype control (broken line) on Kato-cells, III) HD70 (solid line) and human IgG1 isotype control (broken line) on Kato-cells, IV) D7.2 (solid line) and human IgG1 isotype control (broken line) on Kato-cells, V) M79 (solid line) and murine IgG2a isotype control (broken line) on Kato-cells, VI) Panorex (solid line) and murine IgG2a isotype control (broken line) on Kato-cells, VII) H79 human IgG1 (solid line) and human IgG1 isotype control (broken line) on 17-1A-transfected CHO-cells, VIII) H79 murine IgG1 (solid line) and murine IgG1 isotype control (broken line) on 17-1A-transfected CHO-cells, IX) HD70 (solid line) and human IgG1 isotype control (broken line) on 17-1A-transfected CHO-cells, X) D7.2 (solid line) and human IgG1 isotype control (broken line) on 17-1A-transfected CHO-cells, XI) M79 (solid line) and murine IgG2a isotype control (broken line) on 17-1A-transfected CHO-cells, XII) Panorex (solid line) and murine IgG2a isotype control (broken line) on 17-1A-transfected CHO-cells. FIGS. VII-XII also show the results of incubation and detection of the relevant antibodies on non-transfected CHO-cells (dotted line).[0096]
• FIG. 18:[0097]⁵¹Cr antibody dependent cellular cytotoxicity assay. For 51Cr release unstimulated human peripheral blood mononuclear cells (PBMCS, 5×105 cells) as effector cells were incubated with labelled target cells (Kato-cells labelled for 2 h with 51Cr) and antibodies in different concentrations for 4 or 20 h at 37° C. Corresponding non-binding isotypes (h-IgG=human IgG1; m-IgG2a murine IgG2a) were used as negative controls (H79=H79huIgG1). Specific lysis was calculated as ((cpm, experimental release)−(cpm, spontaneous release))/((cpm, maximal release)−(cpm, spontaneous release)).
• FIG. 19: Light microscopic photo of healthy human colon tissue stained with M79 (positive) control. 5 nm cryosections of normal mucosa tissue were incubated with the murine M79 antibody (IgG2a) as positive control (10 μg/ml). Detection of bound murine antibodies was carried out with a peroxidase conjugated polyclonal anti-mouse-Ig antibody and stained with carbazole (brown). Counter staining was carried out with hemalaun (blue).[0098]
• FIG. 20: Light microscopic photo of healthy human colon tissue stained with H79 murine IgG1. 5 nm cryosections of normal mucosa tissue were incubated with the murine IgG version of the H79 antibody (10 μg/ml). Detection of bound murine IgG1 antibodies was carried out with a peroxidase conjugated polyclonal anti-mouse-Ig antibody and stained with carbazole (brown). Counter staining was carried out with hemalaun (blue).[0099]
• FIG. 21: Light microscopic photo of colon carcinoma stained with M79 (positive control). 5 nm cryosections colon carcinoma were incubated with the murine M79 antibody (IgG2a) as positive control (10 μg/ml). Detection of bound murine antibodies was carried out with a peroxidase conjugated polyclonal anti-mouseIg antibody and stained with carbazole (brown). Counter staining was carried out with hemalaun (blue).[0100]
• FIG. 22: Light microscopic photo of colon carcinoma stained with H79 murine IgG1. 5 nm cryosections of colon carcinoma tissue were incubated with the murine IgG1 version of the H79 antibody (10 μg/ml). Detection of bound murine IgG1 antibodies was carried out with a peroxidase conjugated polyclonal anti-mouse-Ig antibody and stained with carbazole (brown). Counter staining was carried out with hemalaun (blue).[0101]
• FIG. 23: Light microscopic photo of healthy human colon tissue stained with murine IgG2a isotype control. 5 nm cryosections of normal mucosa tissue were incubated with irrelevante murine IgG2a antibody as negative control (10 μg/ml). Detection of bound murine antibodies was carried out with a peroxidase conjugated polyclonal anti-mouse-Ig antibody and stained with carbazole (brown). Counter staining was carried out with hemalaun (blue).[0102]
• FIG. 24: Light microscopic photo of healthy human colon issue stained with IgG1 isotype control. 5 nm cryosections of normal mucosa tissue were incubated with irrelevante murine IgG1 antibody as negative control (10 μg/ml). Detection of bound murine antibodies was carried out with a peroxidase conjugated polyclonal anti-mouse-Ig antibody and stained with carbazole (brown). Counter staining was carried out with hemalaun (blue).[0103]
• FIG. 25: Light microscopic photo of human colon carcinoma tissue stained with mutine IgG2a isotype control. 5 nm cryosections of normal mucosa tissue were incubated with irrelevante murine IgG2a antibody as negative control (10 μg/ml). Detection of bound murine antibodies was carried out with a peroxidase conjugated polyclonal anti-mouse-Ig antibody and stained with carbazole (brown). Counter staining was carried out with hemalaun (blue).[0104]
• FIG. 26: Light microscopic photo of human colon carcinoma tissue stained with IgG1 isotype control. 5 nm cryosections of normal mucosa tissue were incubated with irrelevante murine IgGI antibody as negative control (10 μg/ml). Detection of bound murine antibodies was carried out with a peroxidase conjugated polyclonal anti-mouse-Ig antibody and stained with carbazole (brown). Counter staining was carried out with hemalaun (blue).[0105]
• FIG. 27: Epitope analysis of murine antibody M79 and human antibodies H79 and HD70, each of which is specific for the human 17-1A antigen. Antibodies were incubated with a gridded array of peptides comprising 119 polypeptides of 13 amino acids, shifted by two amino acids and covering the entire extracellular amino acid sequence of the human 17-1A-antigen.[0106]
• The peptides were covalently attached at their C-termini to a Pep Spots Membrane (Jerini Biotools, Berlin) as individual spots. Bound murine M79 antibody was directly detected on the Pep Spots Membrane by an anti-murine immunoglobulin antibody coupled to horse radish peroxidase (HRP) followed by chemoluminescence. Signals that are due to the reactivity of the secondary antibody alone with single peptide spots are shown in the corresponding control staining of the Pep Spots Membrane.[0107]
• By subtracting the main background staining at peptide spot 87, peptide spots 38 and 95 turn out to represent specific binding of murine antibody M79. Due to a higher degree of crossreactivity of the secondary HRP-conjugated anti-human immunoglobulin antibody with several peptide spots, bound human antibodies H79 and HD70 were transfered from the Pep Spots Membrane to a blotting membrane, respectively, by means of electrotransfer and subsequently detected by said anti human secondary antibody and chemoluminescence. Specific binding of human antibody H79 could be detected mainly at[0108]peptide spots 8, 11, 13, 14, 59-60, 77 and 79; however, no binding was detectable in case of human antibody HD70.
• The Examples illustrate the invention:[0109]
EXAMPLE IConstruction of the Combinatorial Antibody Libraries and Phage Display
• A library of human immunoglobuline (Ig) light chain and Ig heavy chain Fd-DNA-fragments was constructed by RT-PCR with kappa-, lambda- and Fd delta specific primer sets on the total RNA prepared from peripheral blood lymphocytes (PBL)-and bone marrow-samples of four and ten human donors, respectively according to Chomczynski, Analytical Biochemistry 162 (1987) 156-159. cDNA was synthesized according to standard methods (Sambrook, Cold Spring Harbor Laboratory Press 1989, second edition).[0110]
• The following primer sets were chosen, giving rise to a 5′-XhoI and a 3′-SpeI recognition site for the heavy chain fragments and a 5′-SacI and a 3′-XbaI recognition site for light chains:[0111]
• For the PCR-amplification of the delta Fd cDNA-fragments five different 5′-VH-family specific primers were each combined with one 3′-CH1 delta primer; for the PCR-amplification of the kappa (K) light chain fragments five different 5′-VK-family specific primers were each combined with one 3′-CK primer and for the amplification of the lambda (L) light chain fragments, eight different 5′-VL-family specific primers were combined with one 3′-CL-primer.[0112]
• Primer sets for the amplification of the Fab DNA-fragments (5′ to 3′) are shown in Table I below.[0113]
• The following PCR-programm was used for amplification:[0114]
• Denaturation at 94° C. for 15 seconds, primer annealing at 52° C. for 50 seconds and primer extension at 72° C. for 90 seconds for 40 cycles, followed by a 10 minutes final extension at 72° C.[0115]

  TABLE I
  PRIMER SETS

  heavy chain Fd-fragment:
  5′-primer:
  VH1, 3, 5, 7:	AGGTGCAGCTGCTCGAGTCTGG
  VH2:	CAG(AG)TCACCTTGCTCGAGTCTGG
  VH4:	CAGGTGCAGCTGCTCGAGTCGGG
  VH4B:	CAGGTGCAGCTACTCGAGTGGGG
  VH6:	CAGGTACAGCTGCTCGAGTCAGG
  3′-primer:
  CD1:	TGCCTTACTAGTCTCTGGCCAGCGGAAGAT
  kappa chain fragment:
  5′-primer:
  VK1:	GAGCCGCACGAGCCCGAGCTCCAGATGACCCAGTCTCC
  VK3:	GAGCCGCACGAGCCCGAGCTCGTG(AT)TGAC(AG)CAGTCTCC
  VK2/4:	GAGCCGCACGAGCCCGAGCTCGTGATGAC(CT)CAGTCTCC
  VK5:	GAGCCGCACGAGCCCGAGCTCACACTCACGCAGTCTCC
  VK6:	GAGCCGCACGAGCCCGAGCTCGTGCTGACTCAGTCTCC
  3′-primer:
  CK1D:	GCGCCGTCTAGAATTAACACTCTCCCCTGTTGAAGCTGTTTGTGA
  	CGGGCGAACTCAG
  lambda chain fragment:
  5′-primer:
  VL1:	AATTTTGAGCTCACTCAGCCCCAC
  VL2:	TCTGCCGAGCTCCAGCCTGCCTCCGTG
  VL3:	TCTGTGGAGCTCCAGCCGCCCTCAGTG
  VL4:	TCTGAAGAGCTCCAGGACCCTGTTGTGTCTGTG
  VL5:	CAGTCTGAGCTCACGCAGCCGCCC
  VL6:	CAGACTGAGCTCACTCAGGAGCCC
  VL7:	CAGGTTGAGCTCACTCAACCGCCC
  VL8:	CAGGCTGAGCTCACTCAGCCGTCTTCC
  3′-primer:
  CL2:	CGCCGTCTAGAATTATGAACATTCTGTAGG

• 450 ng of the kappa light chain fragments (digested with SacI and XbaI) were ligated with 1400 ng of the phagmid pComb3H (digested with SacI and XbaI; large DNA-fragment) derived from pComb3 (Barbas, Proc. Natl. Acad. Sci U.S.A. 88 (1991) 7978-7982) wherein the heavy chain position was already occupied by the Fd fragment of the chimerized murine antibody M79 (containing a human IgG1 CH1) directed against the extracellular part of the 17-1A protein (see FIG. 1 for pComb3H cloning site).[0116]
• The resulting combinatorial antibody DNA library was then transformed into 300 μl of electrocompetent[0117]Escherichia coliXL1 Blue by electroporation (2.5 kV, 0.2 cm gap cuvette, 25 FD, 200 Ohm, Biorad gene-pulser) thus resulting in a library size of 4×10⁷independent clones. After one hour of phenotype expression, positive transformants were selected for carbenicilline resistance encoded by the pComb vector. After this adaption these clones were infected with an infectious dose of 1×10¹²phage particles of the helper phage VCSM13 resulting in the production and secretion of filamentous M13 phages, each of them containing single stranded pComb3H-DNA encoding a single human light chain and the Fd segment of chimeric M79 and displaying the corresponding Fab fragment on the phage surface as a translational fusion to the non-infectious part of phage coat protein III (phage display), see FIG. 2.
• This phage library carrying the cloned Fab repertoire was harvested from the culture supernatant by PEG8000/NaCl precipitation and centrifugation, redissolved in TBS/1%BSA and incubated with recombinant s17-1A immobilized on 96 well ELISA plates. s17-1A was prepared as described (Mack, Proc. Natl. Sci. U.S.A. 92 (1995) 7021-7025). Fab phages that did not specifically bind to the target antigen were eliminated by up to ten washing steps with TBS/0.5% Tween. Binders were eluted by using HCl-Glycine pH 2.2 and after neutralization of the eluat with 2[0118]M Tris pH 12, used for infection of a new uninfectedE. coliXL1 Blue culture. Cells successfully transduced with a pComb phagmid copy, encoding an antigen binding Fab fragment, were again selected for carbenicilline resistance and subsequently infected with VCSM13 helper phage to start the second round of antibody display and in vitro selection.
• After five rounds of production and selection of antigen-binding Fab phages, plasmid DNA containing the selected Fab repertoire was prepared. For the production of soluble Fab proteins the gene III DNA fragment was excised from the plasmids thus destroying the translational fusion of the Fd heavy chain segment with the gene III protein. After religation, this pool of plasmid DNA was transformed into 100 μl heat shock competent[0119]E. coliXL1 Blue and plated on Carbenicilline (Carb) LB-Agar. Single colonies were grown in 10 ml LB-Carb-cultures/20 mM MgCl₂and Fab expression was induced after six hours by adding Isopropyl-β-D-thiogalactosid (IPTG) to a final concentration of 1 mM. This in vitro selection as well as expression of soluble Fab-fragments was carried out according to Burton, Proc. Natl. Acad. Sci. U.S.A. 88 (1991), 10134-10137. The cells were harvested after 20 hours; periplasma preparation was carried out by four rounds of freezing (ethanol/dry ice) and thawing (37° C.) and tested by ELISA for Fab fragments binding to s17-1A. 23 of 27 clones showed binding activity. After sequenzing, the two clones with the strongest signals (see FIG. 3) turned out to have identical kappa chains and were called k8; see FIG. 6.
• This human kappa light chain k8 was now used as a binding partner for the human Ig delta heavy chain pool; 2250 ng of human delta heavy chain Fd DNA-fragments (digested with XhoI and SpeI) were ligated with 7000 ng of the phagmid vector pComb3H (digested with XhoI and SpeI; large DNA-fragment) containing the k8 DNA-fragment in the light chain position.[0120]
• The choice of the human delta chain repertoire as source for heavy chain variable-regions that specifically bind to the 17-1A antigen, when combined with the k8 light chain, appeared to be most suitable. Delta chains are only produced in mature unprimed and in self-antigen specific anergic B-cells that have not yet or will not undergo proliferation; therefore the diversity of their heavy chain repertoire is higher and the number of each single specificity therein is lower compared to heavy chain repertoires of other immunoglobulin isotypes.[0121]
• The transformation of the pComb-k8-delta Fd-fragment library into a total of 1500 μl[0122]E. coliXL1 Blue by five equal electroporations (2.5 kV, 0.2 cm gap cuvette, 25 FD, 200 Ohm) resulted in a final number of 1.1×10⁹independent clones.
• In vitro selection of this combinatorial antibody library was carried out as described above for the human light chain repertoire. After four rounds of panning soluble Fab fragments were prepared from eight clones.[0123]
• The periplasma preparations were tested on ELISA. One of the clones showed strong antigen binding (see FIG. 4). This clone was called D4.5 and the DNA of the Fd delta fragment was sequenzed with a reverse delta CH1-specific primer (see FIG. 7).[0124]
• Another s17-1A binding Fab fragment was isolated after further rounds of panning first appearing in round seven with a markedly weaker ELISA signal compared to D4.5 (see FIG. 4). The clone was designated as D7.2 and the DNA sequence was determined again using the delta specific primer (see FIG. 8).[0125]
• To identify further light chain partners that combine with the D4.5 delta heavy chain Fd segment to form a 17-1A specific Fab-fragment, a reshuffling experiment was carried out:[0126]
• 450 ng of human kappa light chain fragments and 450 ng of human lambda light chain fragments (both digested with SacI and XbaI) were each ligated with 1400 ng of the phagmid pComb3H (digested with SacI and XbaI; large DNA-fragment) wherein the heavy chain position was already occupied by the D4.5 Fd fragment. The resulting combinatorial antibody libraries (kappa and lambda) were then each transformed into 300 μl of electrocompetent[0127]Escherichia coliXL1 Blue by electroporation (2.5 kV, 0.2 cm gap cuvette, 25 FD, 200 Ohm, Biorad gene-pulser) thus resulting in a library size of 0.5×10⁷independent clones for the kappa library and of 1.4×10⁷independent clones for the lambda library. After one hour of phenotype expression, positive transformants were selected for carbenicilline resistance encoded by the pComb vector. After this adaption these clones were infected with an infectious dose of 1×10¹²phage particles of the helper phage VCSM13 resulting in the production and secretion of filamentous M13 phages, each of them containing single stranded pComb3H-DNA encoding a single human light chain and the D4.5 heavy chain Fd segment and displaying the corresponding Fab fragment on the phage surface as a translational fusion to the non-infectious part of phage coat protein III.
• Both phage libraries carrying the cloned Fab repertoires (kappa and lambda) were harvested from the culture supernatant by PEG8000/NaCl precipitation and centrifugation, redissolved in TBS/1%BSA and incubated with recombinant s17-1A immobilized on 96 well ELISA plates. Fab phages that did not specifically bind to the target antigen were eliminated by up to ten washing steps with TBS/0.5% Tween. Binders of both libraries (kappa and lambda) were eluted by using HCl-Glycine pH 2.2 and after neutralization of the eluat with 2[0128]M Tris pH 12, used for infection of new uninfectedE. coliXL1 Blue cultures, one for the kappa and one for the lambda library. Cells successfully transduced with a pComb phagmid copy, encoding an antigen binding Fab fragment, were again selected for carbenicilline resistance and subsequently infected with VCSM13 helper phage to start the second round of antibody display and in vitro selection. After five rounds of production and selection of antigen-binding Fab phages, preparations of plasmid DNA were carried out containing the selected Fab repertoire of each round of panning, respectively.
• For the production of soluble Fab proteins the gene III DNA fragment was excised from the plasmids thus destroying the translational fusion of the Fd heavy chain segment with the gene III protein. After religation, this pool of plasmid DNA was transformed into 100 μl heat shock competent[0129]E. coliXL1 Blue and plated on Carbenicilline (Carb) LB-Agar. Single colonies were grown in 10 ml LB-Carb-cultures/20 mM MgCl₂and Fab expression was induced after six hours by adding Isopropyl-β-D-thiogalactosid (IPTG) to a final concentration of 1 mM. The cells were harvested after 20 hours; periplasma preparation was carried out by freezing and thawing and tested by ELISA for Fab fragments binding to s17-1A. In total, 45 clones of the kappa and 45 clones of the lambda library derived predominantly from the fifth round of panning but to a minor extend also from other rounds were tested for binding to the 17-1A antigen. Only one clone designated k5.1 (kappa library) that appeared in round Five showed binding activity (see FIG. 5). The DNA-sequence of the Kappa V-region of k5.1 was determined (see FIG. 9).
EXAMPLE IIBacterial Expression inE. coliXL1 Blue
• As previously mentioned in example I,[0130]E. coliXL1 Blue transformed with pComb3H containing one light and the Fd-segment of one heavy chain produce soluble Fab in sufficient amounts after excision of the gene III fragment and induction with IPTG. The heavy chain Fd-segment and the light chain are exported into the periplasma where they assemble and form functional Fab-fragments. For better periplasma preparations the cells were grown in SB-medium supplemented with 20 mM MgCl₂and are redissolved in PBS after harvesting. By four rounds of freezing at −70° C. and thawing at 37° C., the outer membrane of the bacteria was destroyed by temperature shock and the soluble periplasmatic proteins including the Fab fragments were released into the supernatant. After elimination of intact cells and cell-debris by centrifugation, the supernatants containing the Fab-antibody-fragments were collected and used for further examination. First, k8-D4.5-Fab and k5.1-D4.5-Fab periplasma preparations were tested for binding to immobilized s17-1A antigen, both showing strong ELISA signals (see example I).
• Detection of k8-D4.5 and k5.1-D4.5-Fab-fragments bound to immobilized s17-1A anigen was carried out using a polyclonal biotinylated anti-human-kappa light chain antibody (1 μg/ml PBS) detected with horse raddish conjugated Avidine (1 μg/ml PBS). The signal was developed by adding a substrate solution, containing 2,2′Azino-bis(3-Ethylbenz-Thiazoline-6-Sulfonic Acid) and Na-perborate and detected at a wavelength of 405 nm.[0131]
• The test for binding of the two 17-1A positive human Fab-fragments (k8-D4.5-Fab and k5.1-D4.5-Fab) on Kato-cells (17-1A expressing gastric cancer cell-line), 17-1A transfected CHO-cells (CHO/17-1A) and non-transfected CHO-cells was again carried out with the periplasma preparations. CHO transfected cell-lines were generated by subcloning of a DNA-fragment encoding the complete amino acid sequence of the 17-1A-antigen also known as GA733-2 (Szala, Proc. Natl. Acad. Sci. U.S.A. 87 (1990), 3542-3546), into the eucaryotic expression vector pEF-DHFR (Mack, , Proc. Natl. Acad. Sci. U.S.A. 92 (1995) 7021-7025) according to standard procedures (Sambrook, Molecular Cloning; A Laboratory Manual, Second Edition, Cold Spring Harbour Laboratory Press, Cold Spring Harbour, N.Y. (1989)). The resulting plasmid was linearized with NdeI and transfected into DHFR-deficient CHO-cells for stable expression. The expression of transmembrane 17-1A was increased by stepwise gene amplification induced by subsequent addition of increasing concentrations of the DHFR-inhibitor Methotrexat (MTX) to a final concentration of 500 nM, with the concentration steps in between being 20 nM and 100 nM (Kaufmann, Methods Enzymol. 185 (1990), 537-566). 200 000 cells (Kato-, CHO/17-1A- or CHO-cells) were incubated with one of the periplasma preparations containing relevant or irrelevant Fab, followed by biotinylated polyclonale anti-human-kappa light chain antibody (20 μg/ml PBS) and FITC-conjugated Streptavidine. Labeled cells were then analyzed by flow cytometry.[0132]
• The periplasma preparations containing the k8-D4.5-Fab and the k5.1-D4.5-Fab, respectively showed distinct signals compared to irrelevant periplasma preparation (negative control), but no staining of untransfected CHO-cells thus demonstrating specificity for the 17-1A-antigen. The anti 17-1A antibody M79 (Göttlinger, Int. J. Cancer 38 (1986), 47-53) was used as a positive control for 17-1A-positive cells and a murine IgG2a antibody as isotype control (see FIGS. 10 and 11).[0133]
EXAMPLE IIIEucaryotic Expression in CHO-Cells
• Bacteria are usually not capable of producing complete functional immunoglobulins although they express functional Fab fragments.[0134]
• For the production of complete functional antibodies, mammalian cells have to be used and therefore the k8-light chain and the variable domain of D4.5 heavy chain were subcloned into mammalian expression vectors.[0135]
• a.) light chains (k8 and k5.1): To generate suitable terminal restriction sites, the k8 and the k5.1 DNA fragments were reamplified by PCR, resulting in kappa fragments with a Bsu36I-site at the 5′-end as well as a Sal I and a Not I-site at the 3′-end.[0136]
• These fragments (k8 and k5.1) were subcloned into the plasmid BSPOLL by Bsu36I and Not I, thus adding a mammalian leader sequence and sequenzed for preventing PCR-induced mutations.[0137]
• Utilizing EcoRI and SalI, k8 and k5.1 were excised from BSPOLL and subcloned into the eucaryotic expression vector pEF-ADA (see FIG. 12) derived from the expression vector pEF-DHFR (Mack, Proc. Natl. Acad. Sci. U.S.A. 92 (1995) 7021-7025) by replacing the cDNA encoding murine dihydrofolate reductase (DHFR) by that encoding murine adenosine deaminase (ADA).[0138]
• For each light chain species (k8 and k5.1), 10[0139]⁷CHO cells were transfected with 100 μg of linearized plasmid DNA, respectively and subsequently cultured under conditions selecting for adenosine desaminase (ADA) activity encoded by the expression vector. Surviving ADA-positive cells were cultured for further transfection with heavy chains carrying the D4.5- or the D7.2-variable domain.
• b.) heavy 4.5 variable domain: From the delta Fd-fragment D4.5, the variable region was reamplified by PCR generating Bsu36I restriction sites at both ends. The resulting V-D4.5 DNA-fragment was then subcloned by using these restriction sites, into the eucaryotic expression vector pEF-DHFR already containing an eucaryotic leader sequence as well as a DNA-fragment encoding the human IgG1 heavy chain constant region (see FIG. 13). The D4.5 heavy chain variable region was thus inserted between the leader and the heavy chain constant region. The variable region was sequenced and the complete clone was designated H79V-D4.5 hu IgG1.[0140]
• For later tissue staining, the human IgG1 heavy chain constant region was replaced by the murine IgG1 heavy chain constant region using Xba I for subcloning. This plasmid was designated H79V-D4.5 MIgG1.[0141]
• Both, the human and the murine IgG1-version of the D4.5 heavy chain were each transfected into 107 CHO-cells, already expressing the k8 light chain, respectively. The human IgG1-version was also transfected into CHO cells expressing the k5.1 light chain. 100 μg linearized plasmid DNA was used for heavy chain transfection, respectively.[0142]
• The variable region of the D7.2 heavy chain Fd-fragment was also subcloned into pEF-DHFR resulting in a human IgG1 heavy chain expressing plasmid as described for VD4.5. This expression plasmid was then transfected into CHO-cells already expressing the k8 light chain as described above for H79V-D4.5 hu IgG1. The transfected cells were subjected to selection for ADA- and DHFR-activity as described (Kaufman, Methods Enzymol. 185 (1990), 537-566). The resulting cell lines were designated H79-huIgG1 (VD4.5huIgGl-k8), H79-MIgG1 (VD4.5MIgG1-k8), D7.2 (VD7.2huIgG1-k8) and HD70 (VD4.5huIgG1-k5.1).[0143]
• Three days old culture supernatants from four different confluent 30 ml cell-cultures each producing one of the four anti-17-1A-antibodies (H79-huIgG1, H79-MIgG1, D7.2 and HD70) were tested by ELISA for binding to immobilized s17-1A. Except for D7.2 showing a weak ELISA-signal, the three other antibodies showed strong signals, estimated to represent a binding affinity in the range of the murine antibody M79. Large scale antibody production was carried out in rollerbottles using 500 ml medium.[0144]
• The antibodies H79-huIgG1, D7.2 and HD70 were purified by using a protein A affinity column. The H79-MIgG1 antibody was purified by anti-mouse IgG affinity chromatography.[0145]
• Purity and molecular weight of the recombinant antibodies were determined by SDS-PAGE under reducing and nonreducing conditions (FIGS. 14 and 15). Protein purification and SDS-PAGE were carried out according to standard procedures.[0146]
EXAMPLE IVFunctional Analysis of the H79 Antibodies and HD70
• IV.1. Test on Immobilized Antigen[0147]
• Three days old culture supernatant of a confluent 30 ml culture of human and murine IgG1-transfectants respectively as well as the corresponding preparations of purified antibody were tested for binding on immobilized s17-1A antigen by ELISA and compared to the murine M79 anti 17-1A antibody. Detection was carried out as described in II.[0148]
• The antibodies H79 (huIgG1- and MIgG1 version) and HD70 were estimated to have very similar binding affinities in the range of the murine M79.[0149]
• IV.2. Determination of Affinities[0150]
• Surface plasmon resonance measurement was performed using the BIACORE 2000 device (Biacore AB, Freiburg, Freiburg, Germany). Immobilization of recombinant soluble 17-1A-antigen in each flow cell and analysis of the interaction was carried out with an automatic method in BIACORE 2000. The antigen was covalently coupled to sensor chip CM5 via primary amine groups. After activation of the carboxylated dextran matrix of CM5 sensor chip with a single injection of 80 μl of 0.1 M N-hydroxisuccinimide/0.4 M N-ethyl-N′-(3-dimethylaminopropyl)-carbodiimide (NHS/EDC9) through all four flow cells,[0151]flow cells 1,2,3 and 4 were successively included ito the flow path during injection of s17-1A-antigen (60 μg/ml in 10 mM sodium acetate, pH 4.7). Different contact times of 17-1A to the activated surface lead to approximately 2500 response units (RU9 inflow cell 1, 14000 RU inflow cell 2, 780 RU inflow cell 3 and 290 RU in flow cell 4). Excess activated esters were blocked by injection of 85 μl 1M ethanolamine pH 5 over all four flow cells. Binding experiments were performed at 25° C. in buffer of pH 7.4 containing 10 mM Hepes, 150 mM NaCl, 3 mM EDTA and 0.005% surfactant P20. The binding kinetics of antibodies to immobilized recombinant 17-1A were determined by injecting antibody concentrations ranging from 0.5 to 2 μM. The sensor chip was regenerated between each run with 100 mM Glycin, 500 mM NaCl, 0.005% Tween pH3. The association and dissociation rate constants, Kon and Koff were analysed using BIA-evaluation software from Biacore AB as described (Karlsson, (1991) J Immunol Meth 145: 229-240). Two sets of affinity determinations were carried out (1.set: M79, H79, D7.2, Panorex; 2. set: Panorex, HD70); the murine Panorex was also included inset 2 as internal reference. The KD of D7.2 proved to be below the minimal detection value of 10-4 M and is therefore not shown inTab 2.
• Tab. 2: KD, Kon and Koff-rates of human and relevant murine 17-1A antibodies[0152]

  		Kon	Koff	KD
  	Antibody	(M − 1 s − 1)	(s − 1)	(M)

  1. set:
  murine M79	6.0 × 104	4.5 × 10−2	7.5 × 10 − 7
  human H79	2.1 × 104	7.2 × 10−3	3.4 × 10 − 7
  murine Panorex	1.1 × 105	2.2 × 10−2	2.0 × 10 − 7
  2. set:
  human HD70	0.9 × 105	3.5 × 10−2	3.9 × 10 − 7
  murine Panorex	1.0 × 105	2.7 × 10−2	2.7 × 10 − 7

• IV.3. Flow Cytometry on 17-1A Expressing Eucaryotic Cells[0153]
• Purified antibody preparations of H79 (human and murine IgG1 version), HD70 (human IgG1) and D7.2 (human IgG1) were tested by FACS analysis on 17-1A expressing Kato cells, 17-1A-transfected CHO-cells and untransfected CHO-cells. 2×10[0154]⁵cells were incubated with purified H79-huIgG1, H79-MIgG1, HD70, D7.2, M79, Panorex, M74ch (=human CHIgG1-human Ckappa-version of the murine anti-17-1A-antibody M74 (Göttlinger, Int. J. Cancer 38 (1986), 47-53)), murine IgG2a, murine IgG1, or human IgG1 (20 μg/ml antibody each), respectively. Detection of cell-bound antibodies was carried out with FITC labeled anti mouse IgG- or anti human IgG antibodies (2082 g/ml each). Incubation was carried out for 45-60 min. on ice.
• H79 human IgG1, H79 murine IgG1 and HD70 showed distinct binding to the 17-1A positive cells as well as M79 and Panorex. D7.2 showed weak but significant binding to 17-1A positive cells. None of the antibodies showed binding to untransfected CHO cells and IgG-controls were negative on Kato-cells, CHO/17-1A-cells and untransfected CHO cells (see FIGS. 16 and 17).[0155]
• IV.4. Antibody Dependent Cellular Cytotoxicity (51Cr release) For 51Cr release, human peripheral blood mononuclear cells (PBMCs) as effector cells were isolated from the fresh buffy coat of healthy donors. The PBMCs were separated by Ficoll density gradient centrifugation with a subsequent 100×g centrifugation step. Unstimulated PBMCs (5×10[0156]⁵cells) were added in a volume of 100 μl of RPMI 1640 medium with 10% FCS to each well of a flatbottomed microtiter plate and incubated overnight at 37° C. Target cells were labelled for 2 h with 51Cr. Labeled target cells (100 μl) and antibodies in different concentrations (50 μl) were added to the PBMCs and incubated for 18 h at 37° C. Corresponding non-binding isotypes were used as negative controls. Specific lysis was calculated as ((cpm, experimental release)−(cpm, spontaneous release))/((cpm, maximal release)−(cpm, spontaneous release)).
• The human anti 17-1A antibodies H79 and HD70 proved to mediate high cytotoxicity for the 17-1A positive gastric cancer cell line KATO in this 51Cr release assay. The murine anti 17-1A antibodies M79 and Panorex proved to mediate cell killing to a distinctly lower level (FIG. 18).[0157]
• IV.5. Test on Human Tissue[0158]
• 5 nm cryosections of a colon carcinoma and normal colon tissue respectively were incubated with the murine IgG-version of the antibody H79 (10 μg/ml). In this experiment the murine IgG1 version of H79 was used to avoid unspecific staining due to the presence of human immunoglobulin in human tissue. Detection of bound H79MIgG1 was carried out with a peroxidase conjugated polyclonal anti mouse Ig antibody and stained with carbazole. Counter staining was carried out with hemalaun.[0159]
• Results were evaluated by light microscopy.[0160]
• H79MIgG1 as well as the murine monoclonal antibody M79 (positive control) showed strong staining on normal colon mucosa (M79, FIG. 19; H79-MIgG1, FIG. 20) and weaker staining on colon carcinoma cells (M79, FIG. 21; H79-MIgG1, FIG. 22). In contrast, Isotype controls showed no staining on colon mucosa and colon carcinoma tissues (for M79; FIGS. 23 and 25 and for H79-MIgG1, FIGS. 24 and 26).[0161]
EXAMPLE VEpitope Analysis of H79 and HD70
• To compare the 17-1A-epitopes recognized by the human antibodies H79 and HD70, and by the murine template antibody M79, 13mer peptides derived from the amino acid sequence of the extracellular part of the 17-1A-antigen were sythesized as single spots on a Pep Spots Membrane. These peptides cover the whole extracellular amino acid sequence of the 17-1A-antigen (as defined by Szala, Proc. Natl. Acad. Sci. U.S.A. 87 (1990), 3542-3546) by having an overlap of 11 amino acids with each of the neighboring peptides with the first amino acid of[0162]peptide 1 being identical with the N-terminal amino acid of the 17-1A antigen and the last amino acid of peptide 119 being identical with the C-terminal amino acid of the extracellular part of the 17-1A-antigen (Tab. 3).

  TABLE 3
  Synthesized peptides (numbers correspond to the
  numbers of peptide spots)

  	1.	TATFAAAQEECVC	2.	TFAAAQEECVCEN
  	3.	AAAQEECVCENYK	4.	AQEECVCENYKLA
  	5.	EECVCENYKLAVN	6.	CVCENYKLAVNCF
  	7.	CENYKLAVNCFVN	8.	NYKLAVNCFVNNN
  	9.	KLAVNCFVNNNRQ	10.	AVNCFVNNNRQCQ
  	11.	NCFVNNNRQCQCT	12.	FVNNNRQCQCTSV
  	13.	NNNRQCQCTSVGA	14.	NRQCQCTSVGAQN
  	15.	QCQCTSVGAQNTV	16.	QGTSVGAQNTVIC
  	17.	TSVGAQNTVICSK	18.	VGAQNTVICSKLA
  	19.	AQNTVICSKLAAK	20.	NTVICSKLAAKCL
  	21.	VICSKLAAKCLVM	22.	CSKLAAKCLVMKA
  	23.	KLAAKCLVMKAEM	24.	AAKCLVMKAEMNG
  	25.	KCLVMKAEMNGSK	26.	LVMKAEMNGSKLG
  	27.	MKAEMNGSKLGRR	28.	AEMNGSKLGRRAK
  	29.	MNGSKLGRRAKPE	30.	GSKLGRRAKPEGA
  	31.	KLGRRAKPEGALQ	32.	GRRAKPEGALQNN
  	33.	RAKPEGALQNNDG	34.	KPEGALQNNDGLY
  	35.	EGALQNNDGLYDP	36.	ALQNNDGLYDPDC
  	37.	QNNDGLYDPDCDE	38.	NDGLYDPDCDESG
  	39.	GLYDPDCDESGLF	40.	YDPDCDESGLFKA
  	41.	PDGDESGLFKAKQ	42.	CDESGLFKAKQCN
  	43.	ESGLFKAKQCNGT	44.	GLFKAKQCNGTST
  	45.	FKAKQCNGTSTCW	46.	AKQCNGTSTCWCV
  	47.	QCNGTSTCWCVNT	48.	NGTSTCWCVNTAG
  	49.	TSTCWCVNTAGVR	50.	TCWCVNTAGVRRT
  	51.	WCVNTAGVRRTDK	52.	VNTAGVRRTDKDT
  	53.	TAGVRRTDKDTEI	54.	GVRRTDKDTEITC
  	55.	RRTDKDTEITCSE	56.	TDKDTEITCSERV
  	57.	KDTEITCSERVRT	58.	TEITCSERVRTYW
  	59.	ITCSERVRTYWII	60.	CSERVRTYWIIIE
  	61.	ERVRTYWIIIELK	62.	VRTYWIIIELKHK
  	63.	TYWIIIELKHKAR	64.	WIIIELKHKAREK
  	65.	IIELKHKAREKPY	66.	ELKHKAREKPYDS
  	67.	KHKAREKPYDSKS	68.	KAREKPYDSKSLR
  	69.	REKPYDSKSLRTA	70.	KPYDSKSLRTALQ
  	71.	YDSKSLRTALQKE	72.	SKSLRTALQKEIT
  	73.	SLRTALQKEITTR	74.	RTALQKEITTRYQ
  	75.	ALQKEITTRYQLD	76.	QKEITTRYQLDPK
  	77.	EITTRYQLDPKEI	78.	TTRYQLDPKFITS
  	79.	RYQLDPKFITSIL	80.	QLDPKFITSILYE
  	81.	DPKFITSILYENN	82.	KFITSILYENNVI
  	83.	ITSILYENNVITI	84.	SILYENNVITIDL
  	85.	LYENNVITLDLVQ	86.	ENNVITIDLVQNS
  	87.	NVITIDLVQNSSQ	88.	ITIDLVQNSSQKT
  	89.	IDLVQNSSQKTQN	90.	LVQNSSQKTQNDV
  	91.	QNSSQKTQNDVDI	92.	SSQKTQNDVDIAD
  	93.	QKTQNDVDIADVA	94.	TQNDVDIADVAYY
  	95.	NDVDIADVAYYFE	96.	VDIADVAYYFEKD
  	97.	IADVAYYFEKDVK	98.	DVAYYFEKDVKGE
  	99.	AYYFEKDVKGESL	100.	YFEKDVKGESLFH
  	101.	EKDVKGESLFHSK	102.	DVKGESLFHSKKM
  	103.	KGESLFHSKKMDL	104.	ESLFHSKKMDLTV
  	105.	LFHSKKMDLTVNG	106.	HSKKMDLTVNGEQ
  	107.	KKMDLTVNGEQLD	108.	MDLTVNGEQLDLD
  	109.	LTVNGEQLDLDPG	110.	VNGEQLDLDPGQT
  	111.	GEQLDLDPGQTLI	112.	QLDLDPGQTLIYY
  	113.	DLDPGQTLIYYVD	114.	DPGQTLIYYVDEK
  	115.	GQTLIYYVDEKAP	116.	TLIYYVDEKAPEF
  	117.	IYYVDEKAPEFSM	118.	YVDEKAPEFSMQG
  	119.	DEKAPEFSMQGLK

• The PepSpots Membrane with the synthesized peptides was shaken for ten minutes in methanol and then washed three times for ten minutes in TBS-buffer pH8. The membrane was then blocked in casein based blocking solution, containing 0.05 g/ml sucrose for one hour and then once shaken in TBS pH8/0.05%Tween 20 (TBS-T).[0163]
• Each of the anti-17-1A antibodies was incubated at room temperature together with the membrane for three hours in blocking solution (1 μg antibody/ml). After three washes in TBS-T for ten minutes each, the horse radish peroxidase (HRP)-conjugated secondary antibody (anti mouse/anti human; 1 μg/ml blocking solution) was incubated for two hours at room temperature together with the membrane. Then the membrane was washed for three times in TBS-T for ten minutes each. Detection of bound antibodies was performed directly on the Pep Spots Membrane in case of M79 according to the protocol of the chemoluminescence kit manufacturer (Boehringer). The developed films are shown in FIG. 27. The blot was regenerated after three washes with TBS-T (10 min.) in a solution containing 50 mM Tris-HCl pH 6.7, 100 mM 2-Mercaptoethanol and 2% (w/v) SDS for 30 min at 50° C. and subsequently reused for epitope mapping of the next antibody. Due to the higher degree of unspecific binding of the anti-human immunoglobulin secondary antibody to the polypeptide-spots on the membrane, a fractionated electrotransfer to a second blotting-membrane followed by detection with the anti-human secondary antibody was carried out in case of HD70 and H79 according to Rüdiger, EMBO 16 (1997) 1501-1507. Incubation with the secondary antibody and antibody detection on the blots was performed as described above. The developed films are presented in FIG. 27.[0164]
• As shown in this figure (FIG. 27), the results of peptide based epitope mapping indicate, that the epitope recognized by the murine template antibody M79, mainly represented by[0165]peptide spots 38 and 95, profoundly differs from that recognized by the human antibody H79, mainly represented bypeptide spots 8, 11, 13, 14, 59-60, 77 and 79. As the human antibody HD70 shows no detectable binding at all, it can be further anticipated, that its epitope also differs from that of the murine antibody M79 and that the epitopes of the human antibodies H79 and HD70 are not identical, too.
• The absence of detectable binding signals in case of the human antibody HD70 may be explained by its possible recognition either of a conformational, continuous or discontinuous epitope or of an epitope partially or entirely consisting of carbohydrate; in either case mimicking of such epitopes by short peptides can hardly be expected.[0166]
• 1152122DNAHUMAN 1 aggtgcagct gctcgagtct gg 22224DNAHUMAN 2 cagagtcacc ttgctcgagt ctgg 24323DNAHUMAN 3 caggtgcagc tgctcgagtc ggg 23423DNAHUMAN 4 caggtgcagc tactcgagtg ggg 23523DNAHUMAN 5 caggtacagc tgctcgagtc agg 23630DNAHUMAN 6 tgccttacta gtctctggcc agcggaagat 30738DNAHUMAN 7 gagccgcacg agcccgagct ccagatgacc cagtctcc 38840DNAHUMAN 8 gagccgcacg agcccgagct cgtgattgac agcagtctcc 40939DNAHUMAN 9 gagccgcacg agcccgagct cgtgatgacc tcagtctcc 391038DNAHUMAN 10 gagccgcacg agcccgagct cacactcacg cagtctcc 381138DNAHUMAN 11 gagccgcacg agcccgagct cgtgctgact cagtctcc 381258DNAHUMAN 12 gcgccgtcta gaattaacac tctcccctgt tgaagctctt tgtgacgggc gaactcag 581324DNAHUMAN 13 aattttgacg tcactcagcc ccac 241427DNAHUMAN 14 tctgccgagc tccagcctgc ctccgtg 271527DNAHUMAN 15 tctgtggagc tccagccgcc ctcagtg 271633DNAHUMAN 16 tctgaagagc tccaggaccc tgttgtgtct gtg 331724DNAHUMAN 17 cagtctgagc tcacgcagcc gccc 241824DNAHUMAN 18 cagactgagc tcactcagga gccc 241924DNAHUMAN 19 caggttgagc tcactcaacc gccc 242027DNAHUMAN 20 caggctgagc tcactcagcc gtcttcc 272130DNAHUMAN 21 cgccgtctag aattatgaac attctgtagg 302213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 22 Thr Ala Thr Phe Ala Ala Ala Gln Glu Glu Cys Val Cys 1 5 102313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 23 Thr Phe Ala Ala Ala Gln Glu Glu Cys Val Cys Glu Asn 1 5 102413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 24 Ala Ala Ala Gln Glu Glu Cys Val Cys Glu Asn Tyr Lys 1 5 102513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 25 Ala Gln Glu Glu Cys Val Cys Glu Asn Tyr Lys Leu Ala 1 5 102613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 26 Glu Glu Cys Val Cys Glu Asn Tyr Lys Leu Ala Val Asn 1 5 102713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 27 Cys Val Cys Glu Asn Tyr Lys Leu Ala Val Asn Cys Phe 1 5 102813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 28 Cys Glu Asn Tyr Lys Leu Ala Val Asn Cys Phe Val Asn 1 5 102913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 29 Asn Tyr Lys Leu Ala Val Asn Cys Phe Val Asn Asn Asn 1 5 103013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 30 Lys Leu Ala Val Asn Cys Phe Val Asn Asn Asn Arg Gln 1 5 103113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 31 Ala Val Asn Cys Phe Val Asn Asn Asn Arg Gln Cys Gln 1 5 103213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 32 Asn Cys Phe Val Asn Asn Asn Arg Gln Cys Gln Cys Tyr 1 5 103313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 33 Phe Val Asn Asn Asn Arg Gln Cys Gln Cys Tyr Ser Val 1 5 103413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 34 Asn Asn Asn Arg Gln Cys Gln Cys Tyr Ser Val Gly Ala 1 5 103513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 35 Asn Arg Gln Cys Gln Cys Thr Ser Val Gly Ala Gln Asn 1 5 103613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 36 Gln Cys Gln Cys Thr Ser Val Gly Ala Gln Asn Thr Val 1 5 103713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 37 Gln Cys Thr Ser Val Gly Ala Gln Asn Thr Val Ile Cys 1 5 103813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 38 Thr Ser Val Gly Ala Gln Asn Thr Val Ile Cys Ser Lys 1 5 103913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 39 Val Gly Ala Gln Asn Thr Val Ile Cys Ser Lys Leu Ala 1 5 104013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 40 Ala Gln Asn Thr Val Ile Cys Ser Lys Leu Ala Ala Lys 1 5 104113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 41 Asn Thr Val Ile Cys Ser Lys Leu Ala Ala Lys Cys Leu 1 5 104213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 42 Val Ile Cys Ser Lys Leu Ala Ala Lys Cys Leu Val Met 1 5 104313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 43 Cys Ser Lys Leu Ala Ala Lys Cys Leu Val Met Lys Ala 1 5 104413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 44 Lys Leu Ala Ala Lys Cys Leu Val Met Lys Ala Glu Met 1 5 104513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 45 Ala Ala Lys Cys Leu Val Met Lys Ala Glu Met Asn Gly 1 5 104613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 46 Lys Cys Leu Val Met Lys Ala Glu Met Asn Gly Ser Lys 1 5 104713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 47 Leu Val Met Lys Ala Glu Met Asn Gly Ser Lys Leu Gly 1 5 104813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 48 Met Lys Ala Glu Met Asn Gly Ser Lys Leu Gly Arg Arg 1 5 104913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 49 Ala Glu Met Asn Gly Ser Lys Leu Gly Arg Arg Ala Lys 1 5 105013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 50 Met Asn Gly Ser Lys Leu Gly Arg Arg Ala Lys Pro Glu 1 5 105113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 51 Gly Ser Lys Leu Gly Arg Arg Ala Lys Pro Glu Gly Ala 1 5 105213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 52 Lys Leu Gly Arg Arg Ala Lys Pro Glu Gly Ala Leu Gln 1 5 105313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 53 Gly Arg Arg Ala Lys Pro Glu Gly Ala Leu Gln Asn Asn 1 5 105413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 54 Arg Ala Lys Pro Glu Gly Ala Leu Gln Asn Asn Asp Gly 1 5 105513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 55 Lys Pro Glu Gly Ala Leu Gln Asn Asn Asp Gly Leu Tyr 1 5 105613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 56 Glu Gly Ala Leu Gln Asn Asn Asp Gly Leu Thr Asp Pro 1 5 105713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 57 Ala Leu Gln Asn Asn Asp Gly Leu Thr Asp Pro Asp Cys 1 5 105813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 58 Gln Asn Asn Asp Gly Leu Thr Asp Phe Asp Cys Asp Glu 1 5 105913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 59 Asn Asp Gly Leu Thr Asp Phe Asp Cys Asp Glu Ser Gly 1 5 106013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 60 Gly Leu Thr Asp Pro Asp Cys Asp Glu Ser Gly Leu Phe 1 5 106113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 61 Thr Asp Pro Asp Cys Asp Glu Ser Gly Leu Phe Lys Ala 1 5 106213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 62 Pro Asp Cys Asp Glu Ser Gly Leu Phe Lys Ala Lys Gln 1 5 106313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 63 Cys Asp Glu Ser Gly Leu Phe Lys Ala Lys Gln Cys Asn 1 5 106413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 64 Glu Ser Gly Leu Phe Lys Ala Lys Gln Cys Asn Gly Thr 1 5 106513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 65 Gly Leu Phe Lys Ala Lys Gln Cys Asn Gly Thr Ser Thr 1 5 106613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 66 Phe Lys Ala Lys Gln Cys Asn Gly Thr Ser Thr Cys Trp 1 5 106713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 67 Ala Lys Gln Cys Asn Gly Thr Ser Thr Cys Trp Cys Val 1 5 106813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 68 Gln Cys Asn Gly Thr Ser Thr Cys Trp Cys Val Asn Thr 1 5 106913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 69 Asn Gly Thr Ser Thr Cys Trp Cys Val Asn Thr Ala Gly 1 5 107013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 70 Thr Ser Thr Cys Trp Cys Val Asn Thr Ala Gly Val Thr 1 5 107113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 71 Thr Cys Trp Cys Val Asn Thr Ala Gly Val Arg Arg Thr 1 5 107213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 72 Trp Cys Val Asn Thr Ala Gly Val Arg Arg Thr Trp Lys 1 5 107313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 73 Val Asn Thr Ala Gly Val Arg Arg Thr Asp Lys Asp Thr 1 5 107413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 74 Thr Ala Gly Val Arg Arg Thr Asp Lys Asp Thr Glu Ile 1 5 107513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 75 Gly Val Arg Arg Thr Asp Lys Asp Thr Glu Ile Thr Cys 1 5 107613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 76 Arg Arg Thr Asp Lys Asp Thr Glu Ile Thr Cys Ser Glu 1 5 107713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 77 Thr Asp Lys Asp Thr Glu Ile Thr Cys Ser Glu Arg Val 1 5 107813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 78 Lys Asp Lys Glu Ile Thr Cys Ser Glu Arg Val Arg Thr 1 5 107913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 79 Thr Glu Ile Thr Cys Ser Glu Arg Val Arg Thr Tyr Trp 1 5 108013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 80 Ile Thr Cys Ser Glu Arg Val Arg Thr Tyr Trp Ile Ile 1 5 108113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 81 Cys Ser Glu Arg Val Arg Thr Tyr Trp Ile Ile Ile Glu 1 5 108213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 82 Glu Arg Val Arg Thr Tyr Trp Ile Ile Ile Glu Leu Lys 1 5 108313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 83 Val Arg Thr Tyr Trp Ile Ile Ile Glu Leu Lys His Lys 1 5 108413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 84 Thr Tyr Trp Ile Ile Ile Glu Leu Lys His Lys Ala Arg 1 5 108513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 85 Trp Ile Ile Ile Glu Leu Lys His Lys Ala Arg Glu Lys 1 5 108613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 86 Ile Ile Glu Leu Lys His Lys Ala Arg Glu Lys Pro Tyr 1 5 108713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 87 Glu Leu Lys His Lys Ala Arg Glu Lys Pro Tyr Asp Ser 1 5 108813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 88 Lys His Lys Ala Arg Glu Lys Pro Tyr Asp Ser Lys Ser 1 5 108913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 89 Leu Ala Arg Glu Lys Pro Tyr Asp Ser Lys Ser Leu Arg 1 5 109013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 90 Arg Glu Lys Pro Tyr Asp Ser Lys Ser Leu Arg Thr Ala 1 5 109113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 91 Lys Pro Tyr Asp Ser Lys Ser Leu Arg Thr Ala Leu Gln 1 5 109213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 92 Tyr Asp Ser Lys Ser Leu Arg Thr Ala Leu Gln Lys Glu 1 5 109313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 93 Ser Lys Ser Ser Arg Thr Ala Leu Gln Lys Glu Ile Thr 1 5 109413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 94 Ser Leu Arg Thr Ala Leu Gln Lys Glu Ile Thr Thr Arg 1 5 109513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 95 Arg Thr Ala Leu Gln Lys Glu Ile Thr Thr Arg Tyr Gln 1 5 109613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 96 Ala Leu Gln Lys Glu Ile Thr Thr Arg Tyr Gln Leu Asp 1 5 109713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 97 Gln Lys Glu Ile Thr Thr Arg Tyr Gln Leu Asp Pro Lys 1 5 109813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 98 Glu Ile Thr Thr Arg Tyr Gln Leu Asp Pro Lys Phe Ile 1 5 109913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 99 Thr Thr Arg Tyr Gln Leu Asp Pro Lys Phe Ile Thr Ser 1 5 1010013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 100 Arg Thr Gln Leu Asp Pro Lys Phe Ile Thr Ser Ile Leu 1 5 1010113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 101 Gln Leu Asp Pro Lys Phe Ile Thr Ser Ile Leu Tyr Glu 1 5 1010213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 102 Asp Pro Lys Phe Ile Thr Ser Ile Leu Tyr Glu Asn Asn 1 5 1010313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 103 Lys Phe Ile Thr Ser Ile Leu Tyr Glu Asn Asn Val Ile 1 5 1010413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 104 Ile Thr Ser Ile Leu Tyr Glu Asn Asn Val Ile Thr Ile 1 5 1010513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 105 Ser Ile Leu Tyr Glu Asn Asn Val Ile Thr Ile Asp Leu 1 5 1010613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 106 Leu Tyr Glu Asn Asn Val Ile Thr Ile Asp Leu Val Gln 1 5 1010713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 107 Glu Asn Asn Val Ile Thr Ile Asp Leu Val Gly Asn Ser 1 5 1010813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 108 Asn Val Ile Thr Ile Asp Leu Val Gln Asn Ser Ser Gln 1 5 1010913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 109 Ile Thr Ile Asp Leu Val Gln Asn Ser Ser Gln Lys Thr 1 5 1011013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 110 Ile Asp Leu Val Gln Asn Ser Ser Gln Lys Thr Gln Asn 1 5 1011113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 111 Leu Val Gln Asn Ser Ser Gln Lys Thr Gln Asn Asp Val 1 5 1011213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 112 Gln Asn Ser Ser Gln Lys Thr Gln Asn Asp Val Asp Ile 1 5 1011313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 113 Ser Ser Gln Lys Thr Gln Asn Asp Val Asp Ile Ala Asp 1 5 1011413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 114 Gln Lys Thr Gln Asn Asp Val Asp Ile Ala Asp Val Ala 1 5 1011513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 115 Thr Gln Asn Asp Val Asp Ile Ala Asp Val Ala Tyr Tyr 1 5 1011613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 116 Trp Asp Val Asp Ile Ala Asp Val Ala Tyr Tyr Phe Glu 1 5 1011713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 117 Val Asp Ile Ala Asp Val Ala Tyr Tyr Phe Glu Lys Asp 1 5 1011813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 118 Ile Ala Asp Val Ala Tyr Tyr Phe Glu Lys Asp Val Lys 1 5 1011913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 119 Asp Val Ala Tyr Tyr Phe Glu Lys Asp Val Lys Gly Glu 1 5 1012013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 120 Ala Tyr Tyr Phe Glu Lys Asp Val Lys Gly Glu Ser Leu 1 5 1012113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 121 Tyr Phe Glu Lys Asp Val Lys Gly Glu Ser Leu Phe His 1 5 1012213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 122 Glu Lys Asp Val Lys Gly Glu Ser Leu Phe His Ser Lys 1 5 1012313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 123 Asp Val Lys Gly Glu Ser Leu Phe His Ser Lys Lys Met 1 5 1012413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 124 Lys Gly Glu Ser Leu Phe His Ser Lys Lys Met Asp Leu 1 5 1012513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 125 Glu Ser Leu Phe His Ser Lys Lys Met Asp Leu Thr Val 1 5 1012613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 126 Leu Phe His Ser Lys Lys Met Asp Leu Thr Val Asn Gly 1 5 1012713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 127 His Ser Lys Lys Met Asp Leu Thr Val Asn Gly Glu Gln 1 5 1012813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 128 Lys Lys Met Asp Leu Thr Val Asn Gly Glu Gln Leu Asp 1 5 1012913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 129 Met Asp Leu Thr Val Asn Gly Glu Gln Leu Asp Leu Asp 1 5 1013013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 130 Leu Thr Val Asn Gly Glu Gln Leu Asp Leu Asp Pro Gly 1 5 1013113PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 131 Val Asn Gly Glu Gln Leu Asp Leu Asp Pro Gly Gln Thr 1 5 1013213PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 132 Gly Glu Gln Leu Asp Leu Asp Pro Gly Gln Thr Leu Ile 1 5 1013313PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 133 Gln Leu Asp Leu Asp Pro Gly Gln Thr Leu Ile Tyr Tyr 1 5 1013413PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 134 Asp Leu Asp Pro Gly Gln Thr Leu Ile Tyr Tyr Val Asp 1 5 1013513PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 135 Asp Pro Gly Gln Thr Leu Ile Tyr Tyr Val Asp Glu Lys 1 5 1013613PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 136 Gly Gln Thr Leu Ile Tyr Tyr Val Asp Glu Lys Ala Pro 1 5 1013713PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 137 Thr Leu Ile Tyr Tyr Val Asp Glu Lys Ala Pro Glu Phe 1 5 1013813PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 138 Ile Tyr Tyr Val Asp Glu Lys Ala Pro Glu Phe Ser Met 1 5 1013913PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 139 Tyr Val Asp Glu Lys Ala Pro Glu Phe Ser Met Gln Gly 1 5 1014013PRTArtificial SequenceDescription of Artificial Sequence SYNTHETIC 140 Asp Glu Lys Ala Pro Glu Phe Ser Met Gln Gly Leu Lys 1 5 10141321DNAHUMAN 141 gagctccaga tgacccagtc tccatcctcc ctgtctgctt ctgtgggaga cagagtcacc 60 atcacttgtc ggacaagtca gagcattagc agctattaaa attggtatca gcagaaacca 120 ggacagcctc ctaagctgct catttactgg cgatctaccc gggaatccgg ggtccctgac 180 cgattcagtg gcagcgggtc tgggacagat ttcactctca ccatcagcag tctacaacct 240 gaagattctg caacttacta ctgtcagcag agttacgaca tcccgtacac ttttggccag 300 gggaccaagc tggagatcaa a 321142107PRTHUMAN 142 Glu Leu Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Arg Thr Ser Gln Ser Ile Ser Ser Tyr 20 25 30 Leu Asn Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro Lys Leu Leu Ile 35 40 45 Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val Pro Asp Arg Phe Ser Gly 50 55 60 Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Gln Pro 65 70 75 80 Glu Asp Ser Ala Thr Tyr Tyr Cys Gln Gln Ser Tyr Asp Ile Pro Tyr 85 90 95 Thr Phe Gly Gln Gly Thr Lys Leu Glu Ile Lys 100 105143414DNAHUMAN 143 gaggtgcagc tgctcgagtc tgggggaggc ctggtccagc ctgggaggtc cctgagactc 60 tcctgtgcag cctctggatt caccttcagt agctatggca tgcactgggt ccgccaggct 120 ccaggcaagg ggctggagtg ggtggcagtt atatcatatg atggaagtaa taaatactat 180 gcagactccg tgaagggccg attcaccatc tccagagaca attccaagaa cacgctgtat 240 ctgcaaatga acagcctgag agctgaggac acggctgtgt attactgtgc gaaagatatg 300 gggtggggca gtggctggag accctactac tactacggta tggacgtctg gggccaaggg 360 accacggtca ccgtctcctc agcacccacc aaggctccgg atgtgttccc tcta 414144138PRTHUMAN 144 Glu Val Gln Leu Val Glu Ser Gly Gly Gly Val Val Gln Pro Gly Arg 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Gly Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ala Val Ile Ser Tyr Asp Gly Ser Asn Lys Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Asp Met Gly Trp Gly Ser Gly Trp Arg Pro Tyr Tyr Tyr Tyr 100 105 110 Gly Met Asp Val Trp Gly Gln Gly Thr Thr Val Thr Val Ser Ser Ala 115 120 125 Pro Thr Lys Ala Pro Asp Val Phe Pro Leu 130 135145372DNAHUMAN 145 gaggtgcagc tgctcgagtc tgggggagtc gtggtacagc ctggggggtc cctgagactc 60 tcctgtgcag cctctggatt cacctttgat gattatgcca tgcactgggt ccgccaggct 120 ccaggcaagg ggctggagtg ggtggcagtt atatcatatg atggaagtaa taaatactat 180 gcagactccg tgaagggccg attcaccatc tccagagaca attccaagaa cacgctgtat 240 ctgcaaatga acagcctgag agctgaggac acggctgtgt attactgtgc gaaaaaggaa 300 ggctactggg gccagggaac cctggtcacc gtctcctcag cacccaccaa ggctccggat 360 gtgttccctc ta 372146124PRTHUMAN 146 Glu Val Gln Leu Leu Glu Ser Gly Gly Val Val Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Asp Asp Tyr 20 25 30 Ala Met His Trp Val Arg Gln Ala Pro Gly Leu Gly Leu Glu Trp Val 35 40 45 Ala Val Ile Ser Tyr Asp Gly Ser Asn Lys Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Lys Glu Gly Tyr Trp Gly Gln Gly Thr Leu Val Thr Val Ser 100 105 110 Ser Ala Pro Thr Lys Ala Pro Asp Val Phe Pro Leu 115 120147321DNAHUMAN 147 gagctccaga tgacccagtc tccatcctcc ctgtctgcat ctgtaggaga cagagtcacc 60 atcacttgcc gggcaagtca gagcattagc agctatttaa attggtatca gcagaaacca 120 ggacagcctc ctaagctgct catttactgg gcatctaccc gggaatccgg ggtccctgac 180 cgattcagcg gcagtgaatc tgggacaaat tacactctca ccatcagcag cctgcagcct 240 gaagattttg ctacttactt ttgtcaacag tctgacagtt tgccgatcac cttcggccaa 300 gggacacgac tggacattca a 321148107PRTHUMAN 148 Glu Leu Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Arg Ala Ser Gln Ser Ile Ser Ser Tyr 20 25 30 Leu Asn Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro Lys Leu Leu Ile 35 40 45 Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val Pro Asp Arg Phe Ser Gly 50 55 60 Ser Glu Ser Gly Thr Asn Tyr Thr Leu Thr Ile Ser Ser Leu Gln Pro 65 70 75 80 Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln Ser Asp Ser Leu Pro Ile 85 90 95 Thr Phe Gly Gln Gly Thr Arg Leu Asp Ile Gln 100 105149107PRTHUMAN 149 Glu Leu Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Arg Thr Ser Gln Ser Ile Ser Ser Tyr 20 25 30 Leu Asn Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro Lys Leu Leu Ile 35 40 45 Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val Pro Asp Arg Phe Ser Gly 50 55 60 Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Gln Pro 65 70 75 80 Glu Asp Ser Ala Thr Tyr Tyr Cys Gln Gln Ser Tyr Asp Ile Pro Tyr 85 90 95 Thr Phe Gly Gln Gly Thr Lys Leu Glu Ile Lys 100 105150138PRTHUMAN 150 Glu Val Gln Leu Leu Glu Ser Gly Gly Gly Val Val Gln Pro Gly Arg 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Gly Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ala Val Ile Ser Tyr Asp Gly Ser Asn Lys Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Asp Met Gly Trp Gly Ser Gly Trp Arg Pro Tyr Tyr Tyr Tyr 100 105 110 Gly Met Asp Val Trp Gly Gln Gly Thr Thr Val Thr Val Ser Ser Ala 115 120 125 Pro Thr Lys Ala Pro Asp Val Phe Pro Leu 130 135151124PRTHUMAN 151 Glu Val Gln Leu Leu Glu Ser Gly Gly Val Val Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Asp Asp Tyr 20 25 30 Ala Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ala Val Ile Ser Tyr Asp Gly Ser Asn Lys Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Lys Glu Gly Tyr Tyr Gly Gln Gly Thr Leu Val Thr Val Ser 100 105 110 Ser Ala Pro Thr Lys Ala Pro Asp Val Phe Pro Leu 115 120152107PRTHUMAN 152 Glu Leu Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Arg Ala Ser Gln Ser Ile Ser Ser Tyr 20 25 30 Leu Asn Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro Lys Leu Leu Ile 35 40 45 Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val Pro Asp Arg Phe Ser Gly 50 55 60 Ser Glu Ser Gly Thr Asn Tyr Thr Leu Thr Ile Ser Ser Leu Gln Pro 65 70 75 80 Glu Asp Phe Ala Thr Tyr Phe Cys Gln Gln Ser Asp Ser Leu Pro Ile 85 90 95 Thr Phe Gly Gln Gly Thr Arg Leu Asp Ile Gln 100 105

Claims (33)

1. A method for the production of an anti-human antigen receptor that is low or not immunogenic in humans comprising the steps of selecting a combination of functionally rearranged VH and VL immunoglobulin chains wherein at least said VH chain is derived from essentially unprimed mature human B-lymphocytes or from essentially anergic human B cells and said VL chain is derived from a naturally occurring human B cell repertoire, said chains being expressed from a recombinant vector and using an in vitro display system for binding to a human antigen.

2. The method according toclaim 1 wherein said receptor is an immunoglobulin or a fragment thereof.

3. The method according toclaim 2 wherein said immunoglobulin fragment is a Fv-fragment.

4. The method according to any one ofclaims 1 to3 wherein at least said VH and optionally said VL immunoglobulin chains are derived from a human IgD repertoire.

5. The method according to any one ofclaims 1 to4 wherein said in vitro display system is a phage display system.

6. The method according to any one ofclaims 1 to5 wherein said combination of rearranged chains is expressed from one or more different libraries.

7. The method according to any one ofclaims 1 to6 wherein said human antigen is a tumor antigen.

8. The method according toclaim 7 wherein said tumor antigen is the human 17-1A antigen.

9. The method according toclaim 8 wherein said VH chain comprises one of the two sequences shown in FIG. 7 (nucleotides 1 to 381) and FIG. 8 (nucleotides 1 to 339) and/or said VL chain comprises one of the two sequences shown in FIG. 6 (nucleotides 1 to 321) and FIG. 9 (nucleotides 1 to 321).

10. The method according to any one ofclaims 1 to9 wherein said selection step involves

(i) binding of the display vehicle expressing an antigen receptor

(a) on immobilized target antigen or fragments thereof;

(b) on optionally labeled cells expressing the target antigen or fragments thereof;

(c) or to soluble, preferably labeled target antigen or fragments thereof;

(ii) washing off non-specifically binding display vehicle (a and b) and subsequent elution of specifically binding display vehicle or

(iii) positive enrichment of target antigen bound display vehicle (b and c) from target antigen solution or from suspensions of cells expressing the target antigen;

thus isolated display vehicles including their antigen receptors optionally being multiplied by replication and subjected to further rounds of in vitro selection as described in (i) to (iii).

11. The method according to any one ofclaims 1 to10 wherein prior to said selection step either said VH or said VL chain is selected for binding to said antigen together with a surrogate V chain.

12. The method according toclaim 11 wherein said surrogate chain is a mouse VH or VL chain.

13. The method according to any one ofclaims 1 to12 wherein said selection of a suitable combination involves

(a) testing one and the same VH chain in combination with a variety of different VL chains for binding to said human antigen; or

(b) testing one and the same VL chain in combination with a variety of different VH chains for binding to said human antigen.

14. The method according to any one ofclaims 1 to13 further comprising the steps of obtaining, after selection, the human VH and VL chains or the corresponding nucleic acids and fusing said chains to the same or other VH or VL chains, to immunoglobulin constant regions of heavy (CH) or light chains (CL) or parts thereof or to non-immunoglobulin chains and the corresponding nucleic acids, respectively.

15. The method according toclaim 14 wherein said constant region chains are derived from human IgG1 or IgG3.

16. The method according to any one ofclaims 1 to13 further comprising the steps of obtaining, after selection, the human VH and VL chains and physically linking said chains to non-proteinous pharmaceuticals and/or other biologically active molecules.

17. The method according to any one ofclaims 1 to16 wherein said VH or VL chains are expressed from nucleic acid sequences that are the result of the RT-PCR amplification of mRNA derived from essentially unprimed mature human B-lymphocytes or from essentially anergic human B-cells.

18. An anti-human antigen receptor that is low or not immunogenic in humans, comprises a combination of functionally rearranged VH and VL chains preferably from essentially unprimed mature human B-lymphocytes or from essentially anergic human B-cells and obtainable by the method according to any one ofclaims 1 to17.

19. The receptor according to claims18 which is an antibody or a fragment thereof.

20. The receptor according toclaim 18 or19 which is specific for a human tumor antigen.

21. The receptor according toclaim 20 which is specific for the human 17-1A antigen.

22. The receptor according toclaim 21 wherein said VH chain comprises one of the following two sequences shown in FIG. 7 (nucleotides 1 to 381) and FIG. 8 (nucleotides 1 to 339) and/or said VL chain comprises one of the two following sequences shown in FIG. 6 (nucleotides 1 to 321) and FIG. 9 (nucleotides 1 to 321).

23. A VH chain or a part thereof comprised in the receptor of any one ofclaims 18 to22.

24. A VL chain or a part thereof comprised in the receptor of any one ofclaims 18 to22.

25. The chain ofclaim 23 or24 wherein said part is the CDR3 domain.

26. A kit comprising a combination of functionally rearranged VH and VL immunoglobulin chains wherein at least one of the VH and VL chains are derived from essentially unprimed mature human B-lymphocytes or from essentially anergic human B-cells, said chains being expressible from recombinant vectors of an in vitro display system.

27. The kit according toclaim 26 wherein said in vitro display system is a phage display system.

28. An antibody characterized in that it is derived from human sequences, is specific for the human 17-1A antigen.

29. The antibody ofclaim 28 which is low or non-immunogenic in humans.

30. The antibody ofclaim 28 or29 which is obtainable according to a method of any one ofclaims 1 to17.

31. The antibody of any one ofclaims 28 to30 recognizing an epitope of the extracellulary domain of the 17-1A antigen preferably comprising at least one amino acid sequence of peptide Nos. 8, 11, 13, 14, 59, 60, 77 and 79.

32. The antibody of any one ofclaims 28 to31, wherein the VH chain comprises at least one CDR of one of the following two sequences shown in FIG. 7 (nucleotides 1 to 381) and FIG. 8 (nucleotides 1 to 339) and/or the VL chain comprises at least one CDR of the following two sequences shown in FIG. 6 (nucleotides 1 to 321) and FIG. 9 (nucleotides 1 to 321).

33. A pharmaceutical composition comprising a receptor of any one ofclaims 18 to22, a VH chain ofclaim 23 or25, a VL chain ofclaim 24 or25 and/or antibody of any one ofclaims 28 to32, and optionally a pharmaceutically acceptable carrier.

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