Detailed Description
The technical solutions of the present invention will be described clearly and completely below, and it should be understood that the described embodiments are only a part of the embodiments of the present invention, and not all of the embodiments. All other embodiments, which can be derived by a person skilled in the art from the embodiments given herein without making any creative effort, shall fall within the protection scope of the present invention.
Examples
1. Construction of anti-salmonella phage display nano antibody library
1.1 camel immunization:
selecting a camel which is healthy and is not immunized with any antigen, priming the bactrian camel with an emulsified mixture of inactivated salmonella enteritidis and Freund's complete adjuvant in the same volume at the concentration of 106cfu/mL, emulsifying the antigen with Freund's incomplete adjuvant in the subsequent immunization, and boosting the immunization for 1 time every 2 weeks for 5 times in total. 1 week after each immunization, camel blood was collected to detect antibody titer in serum.
1.2 extraction of total RNA from blood: after the fifth immunization, camel peripheral blood is taken, and total RNA is extracted according to the operation steps of the RNA extraction kit.
1.3 obtaining cDNA by reverse transcription:
oligo (dT) using the total RNA obtained as a template15For reverse transcription of the primer, the first strand of cDNA was synthesized to obtain a cDNA library.
1.4 amplification of Nanobody (VHH) gene fragments:
first round of PCR amplification was performed using the synthesized cDNA as template and CALL001 and CALL002 as primers.
The reaction system is as follows:
10×Ex taq Buffer,5μL
50mM MgSO4,2μL
10mM dNTP,1μL
10mM CALL001 primer, 1. mu.L
10mM CALL002 primer, 1. mu.L
Ex taq DNA polymerase, 0.1. mu.L
cDNA template, 2. mu.L
ddH2Supplementing O to the total system, 50 μ L;
vortex mixing, after short-time centrifugation, carrying out a first round of PCR amplification reaction under the following PCR conditions:
(1)94℃,2min;
(2)94℃,30s;
(3)55℃,30s;
(4)68℃,1min;
30 cycles of amplification in the PCR steps (2) - (4);
(5)68℃,5min。
in the above scheme, the forward primer CALL001 (shown in SEQ ID NO:10) of the PCR amplification VHH is:
5’-GTCCTGGCTGCTCTTCTACAAGG-3’
the reverse primer CALL002 (shown in SEQ ID NO:11) is:
CALL002:5’-GGTACGTGCTGTTGAACTGTTCC-3’
after the PCR products are separated by 1% agarose gel electrophoresis, DNA fragments with the size of 700bp are purified and recovered by a kit, and the first round of PCR amplification VHH genes are shown in a specific electrophoresis identification picture shown in figure 1, wherein M in the picture represents DL 2000marker, and 1 represents the first round of PCR amplification VHH gene products.
And performing second round PCR amplification by using the VHH gene product amplified by the first round PCR as a template and using the CAM-FOR and the CAM-BACK as primers.
The reaction system is as follows:
10×Ex taq Buffer,5μL
50mM MgSO4,2μL
10mM dNTP,1μL
10mM CAM-FOR primer, 1. mu.L
10mM CAM-BACK primer, 1. mu.L
Ex taq DNA polymerase, 0.1. mu.L
cDNA template, 2. mu.L
ddH2Supplementing O to the total system, 50 μ L;
vortex mixing, after short-time centrifugation, carrying out a second round of PCR amplification reaction, wherein the PCR conditions are as follows:
(1)94℃,2min;
(2)94℃,30s;
(3)55℃,30s;
(4)68℃,1min;
amplifying for 20 cycles in the PCR steps (2) - (4);
(5)68℃,5min。
in the above scheme, the forward primer CAM-FOR (shown in SEQ ID NO:12) of the PCR amplification VHH is:
CAM-FOR:5’-GGCCCAGGCGGCCGAGTCTGGRGGAGG-3’
the reverse primer CAM-BACK (see SEQ ID NO:13) is:
CAM-BACK:5’-GGCCGGCCTGGCCGGAGACGGTGACCAGGGT-3’
after the PCR product is separated by 1% agarose gel electrophoresis, a DNA fragment with the size of 400bp is purified and recovered by a kit, namely a VHH fragment, and a specific electrophoresis chart is shown in figure 2, wherein M in figure 2 represents DL 2000marker, and 1 represents a VHH gene product amplified by the second round of PCR.
1.5 construction of the vector
Digestion treatment of pComb3 xss:
the reaction solution was prepared as follows:
pComb3xss vector,2μL
Sfi I,1μL
10×Buffer,2μL
ddH2O to the Total System, 20 μ L
After the enzyme digestion product is separated by 1 percent agarose gel electrophoresis, a vector fragment with the size of 3400bp is purified and recovered by a kit.
The VHH gene is connected with the pComb3xss vector subjected to double enzyme digestion treatment, and In-Fusion connection is carried out according to the following system:
digested pComb3xss vector, 1.4. mu.g
VHH gene, 495ng
10×buffer,20μL
T4 ligase,10μL
ddH2O to the Total System, 200 μ L
The reaction was carried out overnight at 16 ℃ for 16h, recovered with agarose gel DNA purification kit and stored at-20 ℃ until use.
1.6 electrotransformation of ligation products
Thawing E.coli ER2738 competent cells on ice, adding 3. mu.L of the ligation product into 50. mu.L of the competent cells, gently mixing the competent cells uniformly, quickly transferring the mixture into a precooled electric transfer cup, and placing the electric transfer cup on a Bio-rad electric transfer instrument for electric transfer, wherein the electric transfer conditions are as follows: 1.8kV, 200. omega., 25. mu.F, 1mL of pre-warmed SOC broth was added to the cuvette immediately after electrotransformation, pipetted and transferred to a clean sterile 1.5mL shake tube. Ten times of electrotransformation were carried out as described above, and the bacteria solutions after ten times of electrotransformation were mixed and thawed by gentle shaking at 37 ℃ for 1 hour.
1.7 construction of anti-Salmonella phage display Nanobody library
Transferring the recovered bacteria liquid into 200mL SB culture medium, and shaking at 37 deg.C and 250rpm to OD600When the value is 0.5, 1mL of 1X 10 solution is added11pfu of the helper phage M13KO7, 37 ℃ after 1h standing, add kanamycin to a final concentration of 70. mu.g/mL, and shake overnight. The next day, the overnight bacteria were centrifuged at 10000rpm for 15min at 4 ℃, the supernatant was transferred to a sterile centrifuge bottle, 1/5 volumes of PEG/NaCl was added, the mixture was allowed to stand on ice for 2h, centrifuged at 12000rpm for 20min at 4 ℃, 10mL of sterile 0.5% and BSA in PBS buffer was used to resuspend the precipitate, and the precipitate was dissolved to obtain the amplified anti-Salmonella phage display Nanobody library.
2. Elutriation and identification of anti-salmonella nano antibody
2.1 panning of anti-salmonella nanobodies:
inactivated Salmonella enteritidis is used as a coating antigen, each well is 100 mu L, and the concentration is 108CFU/ml (round-by-round decrease in the concentration of the coated bacteria), adding 300. mu.L of 3% skimmed milk powder to block for 1h, washing the plate 3 times with PBST solution containing 0.05%, Tween-20, adding 100. mu.L of phage display nanobody library to each well, incubating at 37 ℃ for 1h, washing the plate 6 times, adding 100. mu.L of glycine solution (pH 2.2) to elute, immediately adding Tris-HCL neutralizes the eluted phage. The titer was determined by taking 10. mu.L of eluted phage, and the remaining strain of ER2738, which was used for infection culture to log phase, was amplified, and the amplified phage was immediately used for subsequent panning. In the second round, the third round and the fourth round of elutriation processes, the concentration of the coating antigen is 5 multiplied by 10 in sequence7CFU/ml、1×107CFU/ml and 5X 106CFU/ml, the remaining panning process was the same as the first panning, for a total of 4 panning rounds. After the fourth panning, 10 μ L phage was used to determine titer, and the next day, 50 clones were randomly picked up on the plate for phage amplification, and the amplified phage were identified by indirect ELISA for positive clones.
2.2 identification of anti-salmonella nanobody:
and carrying out positive clone identification on the panned phage display nano antibody by indirect ELISA. The specific operation is as follows: coating with inactivated Salmonella enteritidis with a certain concentration overnight at 4 ℃, sealing with 3% skimmed milk powder, adding 100 μ L phage-displayed nano antibody, standing at 37 ℃ for 1h, discarding the supernatant, washing the plate with 0.05% PBST solution for 6 times, adding 100 μ L enzyme-labeled anti-M13 secondary antibody, and incubating at 37 ℃ for 1 h. Washing the plate for 6 times, adding TMB substrate for color development, incubating for 15min, adding 50 μ L H2SO4The reaction was stopped and the OD of each well was read at 450nm as shown in FIG. 3. And calculating a P/N value, and taking the hole with the P/N value more than or equal to 2.1 as a positive hole for sequencing analysis.
The concentration of the coating antigen of each round of panning is decreased, the nano antibody with higher affinity can be panned, positive clone which can be combined with salmonella enteritidis is obtained through indirect ELISA screening, sequencing results are analyzed by Bioedit software, IMGT website (www.http:// www.imgt.org /) is logged, the gene sequence of the antibody is analyzed, and the framework region and the complementary determining region of the antibody sequence are determined.
3. Preparation of anti-salmonella nano antibody
3.1 preparation of phage-displayed Nanobody phage422 by means of phage amplification
The specific operation steps are as follows: culturing E.coli ER2738 competent cells (100 mL) at 37 deg.C under shaking at 200rpm until OD600 is about 0.6, adding 10 μ L of elutriated phage-displayed nano-antibody phage422, adding 1mL of helper phage M13KO7 (multiplicity of infection is 20: 1), standing at 37 deg.C for 30min, and culturing at 37 deg.C under 250rpm overnight; the next day, the supernatant was collected by centrifugation, 1/5 volumes of PEG-NaCl solution were added, the mixture was inverted and mixed well, and then phages were precipitated; the pellet was collected by centrifugation to obtain phage-displayed nanobodies, leaving 10 μ L for titer determination.
3.2 preparation of soluble Nanobody NB422 by protein expression
The plasmid of the phage display nano antibody phage422 is extracted and transformed into expression strain TOP 10F' by heat shock. The next day, single colonies on the plates were picked for expansion culture. When OD600 is 0.6, IPTG is added to induce expression, the next day, thallus precipitate is collected by centrifugation, cell lysate is added to crack cells, soluble protein is collected, and the nano antibody is identified by nickel column purification and SDS-PAGE.
The results are shown in FIG. 4, where M in FIG. 4 represents protein marker; the second well in fig. 4 represents the anti-salmonella nanobody NB 422. The concentration of the nano antibody is measured by using the Nanodrop, and the yield of the nano antibody is 6.5mg/L of culture medium through calculation.
The amino acid sequence of the amino acid sequence framework region FR1 of the anti-salmonella nano antibody NB422 is shown as SEQ ID NO. 3;
the amino acid sequence of the amino acid sequence framework region FR2 of the anti-salmonella nano antibody NB422 is shown as SEQ ID NO. 4;
the amino acid sequence of the amino acid sequence framework region FR3 of the anti-salmonella nano antibody NB422 is shown as SEQ ID NO. 5;
the amino acid sequence of the amino acid sequence framework region FR4 of the anti-salmonella nano antibody NB422 is shown as SEQ ID NO. 6;
the amino acid sequence of the complementary determining region CDR1 of the amino acid sequence of the anti-salmonella nano antibody NB422 is shown as SEQ ID NO. 7;
the amino acid sequence of the complementary determining region CDR2 of the amino acid sequence of the anti-salmonella nano antibody NB422 is shown as SEQ ID NO. 8;
the amino acid sequence of the complementary determining region CDR3 of the amino acid sequence of the anti-salmonella nano antibody NB422 is shown as SEQ ID NO. 9;
the amino acid sequence of the anti-salmonella nano antibody NB422 is shown in SEQ ID NO. 1;
the nucleotide sequence of the anti-salmonella nano antibody NB422 is shown in SEQ ID NO. 2.
4. Anti-salmonella nano-antibody thermal stability analysis
Coating inactivated salmonella enteritidis with certain concentration on an enzyme label plate, coating overnight at 4 ℃, washing the plate for 3 times in the next day by PBST, adding a nano antibody solution which is processed for 15min at 37 ℃, 50 ℃, 60 ℃, 70 ℃ and 80 ℃, incubating for 1h at 37 ℃, washing the plate for 3 times by PBST, adding an anti-HA enzyme-labeled secondary antibody, incubating for 1h at 37 ℃, washing the plate for 6 times by PBST, adding a TMB substrate, developing for 15min, and using 2M H for developing2SO4The reaction was stopped and the absorbance was measured at 450 nm. Comparing the influence of different temperature treatments on the activity of the nano antibody, the results are shown in fig. 5, the nano antibody can keep better antigen binding ability at 37-70 ℃, and can still keep 50% of activity after being treated at 80 ℃ for 15min, which indicates that the nano antibody has certain thermal stability.
5. Specificity analysis of anti-salmonella nano antibody
The binding capacity of the nano antibody NB422 and other food-borne pathogenic bacteria is determined by using a double nano antibody sandwich method and 5 kinds of salmonella and 5 kinds of non-salmonella as analytes. Coating 20 mu g/mL of anti-salmonella nano antibody on an enzyme label plate at 4 ℃, adding 300 mu L of skimmed milk powder into each hole for sealing for 1h the next day, washing the plate for 3 times, adding 5 kinds of salmonella of enteritis salmonella, salmonella typhimurium, salmonella hadamari, salmonella london, salmonella paratyphi B and staphylococcus aureus, candida albicans, campylobacter jejuni and escherichia coli O157 with certain concentrations: h7, 5 non-salmonella of Enterobacter sakazakii, incubating for 1H, washing the plate for 3 times, adding 100 mu L of phage display nano antibody, incubating for 1h at 37 ℃, after washing the plate for three times by PBST, adding anti-M13-HRP secondary antibody, standing for 1h at 37 ℃, washing the plate for six times, adding TMB solution for developing for 15min, adding sulfuric acid solution to stop the reaction, and determining the specificity of the nano antibody by measuring the absorbance value of each hole under 450 nm. As a result, as shown in FIG. 6, the Nanobody NB422 cross-reacted with 5 kinds of Salmonella and the OD values were comparable. The nanobody NB422 did not bind to other 5 non-salmonella bacteria. The experimental result shows that the nano antibody NB422 can be used for identifying 5 kinds of salmonella in a broad spectrum manner, and is strong in binding capacity and good in broad spectrum.
6. Enzyme-linked immunoassay method for establishing double-nano antibody sandwich
According to screening pairing, an anti-salmonella nano antibody NB422 is selected as a capture antibody, and a nano antibody phase 422 displayed by a phage is selected as a detection antibody to carry out double-antibody sandwich enzyme-linked immunoassay to detect salmonella. The method comprises the following specific steps: coating the capture antibody NB422 on a 96-well enzyme label plate, wherein the coating concentration of each well is 20 mug/mL, and the temperature is 4 ℃ overnight; the next day, the supernatant was discarded, the plates were washed three times with 0.05% PBST, then blocked with 3% skimmed milk for 1h, and Salmonella enteritidis was diluted in a gradient at a concentration of 1.69X 104~3.33×108CFU/mL, 100. mu.L of bacterial suspension at different concentrations was added to each well and incubated at 37 ℃ for 1 h. Washing the plate with 0.05% PBST three times, adding 100 μ L phage display nano antibody phage422, incubating for 1h at 37 ℃, washing the plate three times, adding anti-M13 enzyme-labeled secondary antibody, and incubating for 1h at 37 ℃. Washing the plate for six times, adding TMB substrate color development solution, developing for 15min at room temperature, adding 2M sulfuric acid solution to terminate the reaction, detecting the OD value of each well at 450nm, and drawing a standard curve, wherein the standard curve is shown in figure 7. The detection limit of the method is 5.08 multiplied by 104CFU/mL。
Sequence listing
<110> northwest agriculture and forestry science and technology university
<120> nano antibody for identifying salmonella in broad spectrum, recombinant vector, host cell and application thereof
<160> 13
<170> SIPOSequenceListing 1.0
<210> 2
<211> 127
<212> PRT
<213> camel (Bactrian camel)
<400> 2
Glu Ser Gly Gly Gly Ser Val Gln Ala Gly Gly Ser Leu Arg Leu Ser
1 5 10 15
Cys Ala Val Ser Arg Ala Thr Asp Thr Arg Tyr Cys Met Gly Trp Phe
20 25 30
Gln Pro Ala Pro Gly Lys Glu Arg Glu Gly Val Ala Ala Ile Tyr Thr
35 40 45
Thr Lys Asn Ser Arg Gly Val Ser Thr Phe Tyr Gly Asp Ser Val Lys
50 55 60
Gly Arg Phe Thr Ile Ser Gln Asp Gly Ala Arg Asn Thr Met Ser Leu
65 70 75 80
Gln Met Asn Ser Leu Gln Pro Glu Asp Thr Ala Val Tyr Tyr Cys Ala
85 90 95
Ala Arg Val Pro Cys Gln Ser Met Thr Gly Lys Ala Thr Thr Leu Glu
100 105 110
Tyr Gly Tyr Asn Tyr Trp Gly Gln Gly Ile Gln Val Thr Val Ser
115 120 125
<210> 2
<211> 381
<212> DNA
<213> camel (Bactrian camel)
<400> 2
gagtctggag gagggtcggt gcaggctgga gggtctctga gactctcttg tgcagtttct 60
agagccacgg atactaggta ctgcatgggc tggttccgcc aggctccagg gaaggagcgc 120
gagggggtcg cagccattta tactactaag aatagccgag gtgttagcac attctatggc 180
gactccgtga agggccgatt caccatctcc caagacggcg ccaggaacac catgtctctg 240
caaatgaaca gcctgcaacc tgaagacact gccgtgtact actgcgcggc tcgagtgccc 300
tgtcagtcta tgacggggaa agcgaccaca ctggaatatg gatataacta ctggggacag 360
gggatccagg tcaccgtctc c 381
<210> 3
<211> 20
<212> PRT
<213> camel (Bactrian camel)
<400> 3
Glu Ser Gly Gly Gly Ser Val Gln Ala Gly Gly Ser Leu Arg Leu Ser
1 5 10 15
Cys Ala Val Ser
20
<210> 4
<211> 16
<212> PRT
<213> camel (Bactrian camel)
<400> 4
Trp Phe Gln Pro Ala Pro Gly Lys Glu Arg Glu Gly Val Ala Ala Ile
1 5 10 15
<210> 5
<211> 37
<212> PRT
<213> camel (Bactrian camel)
<400> 5
Asp Ser Val Lys Gly Arg Phe Thr Ile Ser Gln Asp Gly Ala Arg Asn
1 5 10 15
Thr Met Ser Leu Gln Met Asn Ser Leu Gln Pro Glu Asp Thr Ala Val
20 25 30
Tyr Tyr Cys Ala Ala
35
<210> 6
<211> 10
<212> PRT
<213> camel (Bactrian camel)
<400> 6
Trp Gly Gln Gly Ile Gln Val Thr Val Ser
1 5 10
<210> 7
<211> 10
<212> PRT
<213> camel (Bactrian camel)
<400> 7
Arg Ala Thr Asp Thr Arg Tyr Cys Met Gly
1 5 10
<210> 8
<211> 14
<212> PRT
<213> camel (Bactrian camel)
<400> 8
Tyr Thr Thr Lys Asn Ser Arg Gly Val Ser Thr Phe Tyr Gly
1 5 10
<210> 9
<211> 20
<212> PRT
<213> camel (Bactrian camel)
<400> 9
Arg Val Pro Cys Gln Ser Met Thr Gly Lys Ala Thr Thr Leu Glu Tyr
1 5 10 15
Gly Tyr Asn Tyr
20
<210> 10
<211> 23
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 10
gtcctggctg ctcttctaca agg 23
<210> 11
<211> 23
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 11
ggtacgtgct gttgaactgt tcc 23
<210> 12
<211> 27
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 12
ggcccaggcg gccgagtctg grggagg 27
<210> 13
<211> 31
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 13
ggccggcctg gccggagacg gtgaccaggg t 31