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CN111518889A - Method for predicting sperms in testis of azoospermia patient according to seminal plasma mRNA - Google Patents

Method for predicting sperms in testis of azoospermia patient according to seminal plasma mRNA
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CN111518889A
CN111518889ACN202010380076.7ACN202010380076ACN111518889ACN 111518889 ACN111518889 ACN 111518889ACN 202010380076 ACN202010380076 ACN 202010380076ACN 111518889 ACN111518889 ACN 111518889A
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testis
azoospermia
semen
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rna
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闫威
唐运革
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Guangdong Institute Of Family Planning Science And Technology (guangdong Family Planning Specialist Hospital)
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Guangdong Institute Of Family Planning Science And Technology (guangdong Family Planning Specialist Hospital)
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Abstract

The invention discloses a method for predicting the existence of sperms in the testis of a patient without spermatids according to seminal plasma mRNA, which takes testis biopsy as 'gold standard', divides a semen sample of the patient without spermatids into a testis spermatid group and a testis spermatid group, determines the difference of expression profiles of two groups of semen exRNA by applying a deep sequencing technology, compares the difference with the existing spermatid transcriptome database, and searches for the exRNA which has the function of judging the types of the spermatids and is differentially expressed, and is used for judging whether haploid spermatids exist in the testis of the patient without spermatids. The application of the scheme of the invention in clinic can greatly improve the sperm collection success rate of patients with azoospermia, and is also helpful for guiding the patients with azoospermia to select an economical, painless and effective treatment method to solve the problem of infertility.

Description

Method for predicting sperms in testis of azoospermia patient according to seminal plasma mRNA
Technical Field
The invention relates to the technical field of medical detection, in particular to a method for predicting the existence of sperms in testes of a patient without spermacrasia according to seminal plasma mRNA (messenger ribonucleic acid).
Background
About 10% -20% of male infertility patients are azoospermia, which is further classified into Obstructive Azoospermia (OA) and non-obstructive azoospermia (NOA). If there is sperm in testis of azoospermia patient, sperm can be obtained by external techniques such as testicular sperm aspiration (TESE) and assisted reproduction technique, so that offspring with self blood relationship can be obtained, nearly 100% of OA patients can obtain sperm by TESE, while only about 50% -60% of NOA patients can obtain sperm. However, on the day of ova aspiration by the patient's partner, some of the azoospermia patients may suffer the embarrassment of not being able to aspirate sperm, which is as high as about 30% of the cases in NOA, when the female partner has received expensive ovulation-promoting treatment and may have undergone ova aspiration, and thus, effective assessment of male during the time the NOA couple enters the assisted reproductive cycle is of great clinical significance. For patients with azoospermia, the choice of having their own children is limited, mainly by two routes: (1) intracytoplasmic injection of sperm (ICSI) or IUI by sperm supply; (2) haploid spermatids are searched in the testis by surgical operation, and if the haploid spermatids can be found, offspring of the self blood relationship can be obtained through ICSI. Despite the great invasiveness and uncertainty of surgery, most patients prefer to have sperm harvested in this manner because offspring of their consanguineous relationship are available. Currently, there is no way to determine whether haploid spermatids are present in the testis of a patient without spermatozoa prior to surgical exploration. We have been thinking about whether we can use the semen or the components of seminal plasma as a biological marker to determine if haploid spermatids are present in the testis of a patient with azoospermia? If a method for judging whether haploid spermatids exist in the testis through semen/plasma analysis can be established, the operation pain and the economic burden of a patient can be reduced, unnecessary operation exploration can be avoided, and the diagnosis and treatment efficiency is improved. For example, for patients who have no haploid spermatids in their testis at all, the patient should be informed that a testicular biopsy is unnecessary and may choose for artificial insemination to address infertility. Therefore, it is a research topic with great clinical value.
Disclosure of Invention
In view of the above, the technical problem to be solved by the present invention is to provide a method for predicting the presence or absence of sperms in the testis of a patient with azoospermia according to seminal plasma mRNA, taking testis biopsy as "gold standard", dividing a semen sample of a patient with azoospermia into a testis spermatic group and a testis azoospermia group, determining the difference of expression profiles of two groups of spermatic exRNA by using a deep sequencing technology, comparing the difference with the existing spermatic cell transcriptome database, and searching for the exRNA with difference expression for judging the types of spermatic cells, wherein the difference expression exRNA is used for judging whether haploid spermatids exist in the testis of the patient with azoospermia. The success of the invention and the future clinical application can greatly improve the sperm-taking success rate of the azoospermia patients, and is also helpful for guiding the azoospermia patients to select an economical, painless and effective treatment method to solve the problem of infertility.
Therefore, the invention discloses the following technical scheme:
a method for predicting the presence or absence of sperm in the testis of a patient with azoospermia based on seminal plasma mRNA, comprising the steps of:
(1) collecting and processing a semen sample: collecting semen of patients with azoospermia, and freezing and storing with liquid nitrogen; azoospermia is defined as taking semen every 4-5 weeks, and no sperm is found in microscopic examination after three times of semen centrifugation; performing low-speed centrifugation twice on the collected semen of the patient without spermatozoon, and then using the supernatant for RNA sequencing;
(2) isolation and sequencing of RNA: the mirVana miRNA separation kit can be used for separating large-fragment RNA and small-fragment RNA, and the quality, size distribution and quantity of the RNA are analyzed by using Bioanalyzer 2100(Agilent) after separation;
(3) multi-point puncture biopsy of testis: obtaining mature sperms in the testis of a patient without spermatozoon disease by adopting a testis multi-point puncture method through a testis sperma suction technique, and finding the mature sperms under an inverted microscope; then dividing the sample into a microscopic group and an azoospermia group by taking the pathological histological examination as a gold standard;
(4) differential expression profiling of seminal plasma mRNA in azoospermia patients: the method comprises the steps of (1) carrying out pathological detection on whether haploid spermatids exist in the testis of a patient with azoospermia by using testis multipoint biopsy, and dividing a sample of the patient with azoospermia into a testis spermatid group and a testis azoospermia group; unfreezing and centrifuging the two groups of semen at a low speed, separating semen supernatant from semen cells, centrifuging the semen supernatant at a low speed once again, and sequencing the obtained supernatant to obtain a pure semen RNA sequence; then comparing with the RNA sequencing result of each patient and the existing RNA library to obtain differentially expressed RNA with prediction value;
(5) bioinformatics analysis: endogenous and exogenous mRNA were annotated using TCF (Tophat, Cufflink and fusion map) annotation pathway; annotating mRNA using the lncRNA annotation pathway;
(6) and (3) verifying the sensitivity and specificity of the specific RNA prediction index: detecting the RNA expression level with prediction value of each group by using real-time PCR; applying SPSS software, carrying out variance analysis, Kruskal-Wallis H test and Mann-whitney U test on experimental data, taking alpha as 0.05 as a test standard, and evaluating the sensitivity and specificity of a detection index by calculating integral analysis below an ROC curve by adopting a subject working characteristic curve method;
(7) screening a plurality of genes which can be used for predicting whether haploid sperms exist in the testis from a sequencing result; and (3) comparing whether the semen of the azoospermia patient contains corresponding genes or not by sequencing specific samples to predict whether haploid sperms exist in the testis or not.
Preferably, in the step (3), the testicular multipoint needle biopsy comprises the following specific steps:
taking the patient in the supine position, disinfecting the operation area by a conventional method, laying a sterile hole towel, and carrying out nerve block anesthesia in the spermatic cord by 1% lidocaine;
a disposable 20ml medicine dissolving empty needle (a needle head with a side hole) is used as a puncture needle; fixing the testicle on the side of the left hand three fingertips to cling to the subcutaneous part of the scrotum, taking the middle upper part of the testicle at the puncture part, puncturing the scrotum by using 1% lidocaine local anesthesia at the puncture point, utilizing a No. 5 half needle injector to puncture the scrotum until the white membrane of the testicle makes an access, holding a medicine dissolving empty needle for puncture by a right hand to puncture into the parenchyma of the testicle along the access through the skin, repeatedly drawing a needle plug for a plurality of times, then drawing the needle plug to the position of 20ml to form negative pressure, and pulling out the needle head under the state of keeping the.
Dividing the sucked testicular tissue into two parts, putting one part into a small culture dish containing HTF liquid, separating, scratching, shredding and extruding the testicular tissue by using a 1ml syringe needle to release spermatids and sperms to prepare cell suspension, and searching for mature sperms under an inverted microscope; if sperm exist, the operation is ended;
if the testicular tissue at the side of the operation is spermadless, puncture at the same side for the 2 nd time can be carried out, if the spermadless still exists, the opposite side TESE is carried out according to whether mature spermadless is found under an inverted microscope;
after the operation, the other part of the testis tissue fixed by the Bouin liquid is sent to the pathology, the routine HE staining is carried out, the pathological histological examination is carried out by a medical doctor in a pathology department, and the specimen is divided into a group with a mirror and a group without a sperm by taking the pathological histological examination as a gold standard.
Preferably, in the step (4), due to exogenous RNA contamination such as protective agent contained in the frozen semen, the frozen protective agent needs to be sequenced separately, and the obtained sequence is removed from the experimental result, so as to obtain a pure semen RNA sequence.
Preferably, in the step (4), the low-speed centrifugation refers to 2000g centrifugation.
Preferably, in the step (7), the prediction rule of the related gene is:
(1) the expression of TDRP7-2 and PRM2 mRNA in the seminal plasma is reduced, so that the pathological types of normal and spermatogenic block can be distinguished;
(2) the expression of SMCP and ACSBG2-2 mRNA in the seminal plasma is reduced, so that normal and obstruction, non-obstructive azoospermia pathological types can be distinguished;
(3) decreased ARID5B-3 and FRS2-2 mRNA expression in the seminal plasma can distinguish between normal and supportive cytopathic types of cell syndrome alone.
The invention screens 17 genes which can be used for predicting whether haploid sperms exist in the testis from a sequencing result. Wherein PRM2, ODF1, ACSBG2 and SMCP are specifically expressed in sperm cells; genes such as FRS2, TBX3, CDKN1B, CSDE1, AR, ARID5B, DLD, TDRD7, UBE3A and CAT are mainly expressed in spermatogonium and spermatocyte; genes such as UBA52, POLR2L, RPL36 are mainly expressed in supporting cells. The clinical group of the experimental setup was: a normal control group, a spermatogenic arrest group, a group with spermatozoa by puncture and a group with only supporting cells; with RPL41 as the reference gene, the results of further validation of 17 candidate genes are shown in the figure: genes that differ among groups include genes such as AR, TDRP7, ARID5B, SMCP, PRM2, FRS2, and ACSBG 2. Wherein the expression of the SMCP and ACSBG2 genes can be detected only in a normal control group; the PRM2 gene is only expressed in the normal control group and the group punctured with sperm; the expression level of the AR gene is significantly different between the normal control group and the punctured sperm group (P <0.05), the TDRP7 gene is significantly different between the support cell group only and the sperm production blocking group compared with the normal control group (P <0.05), and the ARID5B gene is significantly different between the normal control group and the support cell group (P < 0.05).
The method can predict the spermatogenic function of the testis of the patient without spermatozoon by obtaining a plurality of seminal plasma mRNA: (1) the expression of TDRP7-2 and PRM2 mRNA in the seminal plasma is reduced, so that the pathological types of normal and spermatogenic block can be distinguished; (2) the expression of SMCP and ACSBG2-2 mRNA in the seminal plasma is reduced, so that normal and obstructive and non-obstructive azoospermia pathological types can be distinguished; (3) decreased ARID5B-3 and FRS2-2 mRNA expression in the seminal plasma can distinguish between normal and supportive cytopathic types of cell syndrome alone. The achievement is expected to be transformed into clinic to improve the semen collection success rate of the azoospermia patient, and is also helpful for guiding the azoospermia patient to select an economic and effective treatment method to solve the infertility problem.
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In order to more clearly illustrate the technical solutions of the embodiments of the present invention, the drawings of the embodiments will be briefly described below.
FIG. 1 is a major analysis of the azoospermia transcriptome for different types (TESA, MA, SOS and CTR);
FIG. 2 shows the difference between the normal control group and the extracellular mRNA of TESA, MA and SOS type azoospermia;
FIG. 3 shows the difference between SOS and TESA, MA type azoospermia extracellular mRNA;
FIG. 4 is a heat map of the expression of different types of azoospermia extracellular mRNA;
FIG. 5 shows the results of gene screening.
Detailed Description
The present invention will be described in further detail with reference to the accompanying drawings and examples. The following examples are intended to illustrate the invention only and are not intended to limit the scope of the invention. The method of carrying out the process, in which the specific conditions are not specified in the examples, is generally carried out in a conventional manner.
Example 1
1.1 semen specimen Collection and processing
Collecting 2ml of 30 parts of normal semen and 42 parts of semen of patients without spermatozoon symptoms, and freezing and storing by liquid nitrogen. The normal semen is from human sperm bank of Guangdong province. Azoospermia is defined as taking semen every 4-5 weeks, and no sperm is found in microscopic examination after three times of semen centrifugation. The semen was centrifuged twice at low speed and the supernatant was used for RNA sequencing.
1.2 isolation and sequencing of RNA
Large and small RNA fragments can be separated by using the mirVana miRNA separation kit, and the quality, size distribution, quantity and the like of the RNA are analyzed by using a Bioanalyzer 2100(Agilent) after separation.
1.3 testicular multiple aspiration biopsy
The patient takes the supine position, disinfects the operation area by a conventional method, lays a sterile hole towel, and anesthetizes the nerve block in the spermatic cord by 1 percent lidocaine. A disposable 20ml hollow needle (needle with side hole) for dissolving medicine is used as a puncture needle. The left-hand three-finger method is used for fixing the lateral testis to be tightly attached to the lower skin of the scrotum, the middle upper part of the testis is taken at the puncture part, 1% Liduoka local anesthesia is used for the puncture point, a No. 5 half needle injector is used for puncturing the scrotum until the white membrane of the testis makes an access, a right hand holds a medicine dissolving empty needle for puncture to enter the parenchyma of the testis through the skin along the access, the needle plug is repeatedly pulled out for a plurality of times, then the needle plug is pulled to the position of 20ml to form negative pressure, and the needle head is pulled out under the condition of the. Dividing the sucked testis tissue into two parts, putting one part into a small culture dish containing HTF liquid, separating, scratching, shredding and extruding the testis tissue by using a 1ml syringe needle to release spermatids and sperms to prepare cell suspension, and searching for mature sperms under an inverted microscope; if sperm exist, the operation is ended. If the perioperative testicular tissue is azoospermic, theipsilateral puncture 2 times can be performed, if azoospermic still exists, the contralateral TESE is performed according to whether mature sperms are found under an inverted microscope. After the operation, the other part of the testis tissue fixed by the Bouin liquid is sent to the pathology, the routine HE staining is carried out, the pathological histological examination is carried out by a pathologist, and the specimen is divided into a group with a microscope and a group without a sperm by taking the pathological histological examination as a gold standard.
1.4 differential expression profiling of seminal plasma mRNA in patients with azoospermia
The method is characterized in that testis multipoint biopsy is used for pathologically detecting whether haploid spermatids exist in the testis of a patient with azoospermia, and a sample of the patient with azoospermia is divided into a testis spermatid group and a testis azoospermia group. The two groups of semen are unfrozen, centrifuged once at 2000g, the semen supernatant is separated from the sperm cells, centrifuged once again at 2000g, and the harvested supernatant is used for sequencing. Because the frozen semen contains exogenous RNA pollution such as a protective agent and the like, the frozen protective agent is singly sequenced, and the obtained sequence is removed from the experimental result, so that the pure semen RNA sequence can be obtained. And then comparing with the RNA sequencing result of each patient and the existing RNA library to obtain the differentially expressed RNA with prediction value.
1.5 bioinformatics analysis
Endogenous and exogenous mRNA were annotated using TCF (Tophat, Cufflink and fusion map) annotation pathway; mRNA was annotated using the lncRNA annotation pathway.
1.6 verification of sensitivity and specificity of specific RNA prediction index
2ml of semen of 60 azoospermia patients is collected and frozen for storage. The double-blind design is adopted, and the specimens are divided into two groups according to the pathological detection result of testicle multipoint biopsy: sperm-containing and sperm-free groups. Real-time PCR was used to detect the levels of RNA expression in each group that had predictive value. And (3) applying SPSS 13.0 software, carrying out analysis of variance, Kruskal-WallisH test and Mann-whitney U test on experimental data, taking alpha to 0.05 as a test standard, and evaluating the sensitivity, specificity and the like of the detection index by calculating integral analysis below a ROC curve by using a receiver operating characteristic curve (ROC curve) method.
2. Results of the experiment
In the experiment, 17 genes which can be used for predicting whether haploid sperms exist in the testis are screened from a sequencing result. Wherein PRM2, ODF1, ACSBG2 and SMCP are specifically expressed in sperm cells; genes such as FRS2, TBX3, CDKN1B, CSDE1, AR, ARID5B, DLD, TDRD7, UBE3A and CAT are mainly expressed in spermatogonium and spermatocyte; genes such as UBA52, POLR2L, RPL36 are mainly expressed in supporting cells. The clinical group of the experimental setup was: a normal control group, a spermatogenic arrest group, a group with spermatozoa by puncture and a group with only supporting cells; with RPL41 as the reference gene, the results of further validation of 17 candidate genes are shown in the figure: genes that differ among groups include genes such as AR, TDRP7, ARID5B, SMCP, PRM2, FRS2, andACSBG 2. Wherein the expression of the SMCP and ACSBG2 genes can be detected only in a normal control group; the PRM2 gene is only expressed in the normal control group and the group punctured with sperm; the expression level of the AR gene is significantly different between the normal control group and the punctured sperm group (P <0.05), the TDRP7 gene is significantly different between the support cell group only and the sperm production blocking group compared with the normal control group (P <0.05), and the ARID5B gene is significantly different between the normal control group and the support cell group (P < 0.05).
The invention can predict the spermatogenic function of the testis of the patient without spermatozoon by obtaining the mRNA of some sperms: (1) the expression of TDRP7-2 and PRM2 mRNA in the seminal plasma is reduced, so that the pathological types of normal and spermatogenic block can be distinguished; (2) the decrease of the expression of SMCP and ACSBG2-2 mRNA in the seminal plasma can distinguish normal and obstructive, non-obstructive azoospermia pathological types; (3) decreased ARID5B-3 and FRS2-2 mRNA expression in the seminal plasma can distinguish between normal and supportive cytopathic types of cell syndrome alone. The achievement is expected to be transformed into clinic to improve the semen collection success rate of patients with azoospermia, and is also helpful for guiding the patients with azoospermia to select an economic and effective treatment method to solve the infertility problem.
1. High throughput RNA-Seq sequencing results principal component analysis
The invention uses hiseq2000 platform to measure 40 samples in total, and obtains the result that the extracellular RNA can be used for predicting whether the testis of the patient with azoospermia has haploid sperms through high-throughput RNA-Seq sequencing. Principal component analysis (PCA analysis) is performed using the expression level of the gene, whereby the relationship between samples is clarified, and a PCA analysis chart can express the relationship between samples from each dimension. The closer the sample clustering distance or PCA distance is, the more similar the samples are, and vice versa, the larger the difference is. The samples in different groups are distributed far and the samples in the same group are concentrated in the spatial distribution. As shown in fig. 1: testicular puncture with sperm group (TESA), sperm production block group (MA), support cell syndrome only group (SOS), and control group (CTR). The same set of samples were pooled together, with outlier samples present in the TESA set. RNA sequencing data showed that there was a clear separation of gene expression between the CTR group and the MA, SOS and TESA groups. The differences in gene expression between the SOS and CTR groups in principal component 2(PC2) were less separated, but the gene expression between the two principal components, PC1 and PC2, was not significantly separated between the TESA and MA groups.
2. Enrichment analysis of gene set after high-throughput RNA-Seq sequencing
And (3) aiming at the RNA-Seq sequencing result, constructing a target gene set after classifying the gene annotation information, and analyzing the gene expression difference between the CTR group and the MA, SOS and TESA groups. As shown in fig. 2, the CTR group showed significant segregation of gene expression related to biological functions such as nuclear tissue, gametogenesis, germ cell development, spermatogenesis, sperm development, fertilization, sexual development, chromosome aggregation, and sperm differentiation, as compared to the MA, SOS, and TESA groups. As shown in fig. 3, the SOS group has significant separation of genes related to biological functions such as reproductive development, amino acid transport, and female gonad development, compared to the CTR, MA, and TESA groups.
3. Heatmap analysis after high throughput RNA-Seq sequencing
The heat map results after high-throughput RNA-Seq sequencing are shown in FIG. 4, wherein TSSK6, ZNF541, TBATA, SPEM1, SPATA3, ESR2 and other genes in the CTR group are highly expressed, but the expression levels in the TESA, SOS and MA groups are low. In the SOS group, the expression levels of the genes such as FZD5, CAT, CSDE1 and UBE3a were significantly lower than those in the TESA, MA and CTR groups. The expression level of genes such as RPL36, UBA52 and U2AF1 in the TESA group is significantly lower than that in the SOS, MA and CTR groups. Functional annotation results of Gene Ontology (GO) showed 26 significant Goterms.
The method of the invention screens 17 genes with difference between groups, and further verifies by RT-PCR technology. The clinical grouping was set as: normal control group, spermatogenic arrest group, group with punctured sperm and support cell only group, 8 person samples of each group are used for analyzing stability and predictive value of the selected gene after analysis.
The results of further validation of 17 candidate genes with RPL41 as the reference gene are shown in fig. 5: the genes with differences among groups include genes such as AR, TDRP7, ARID5B, SMCP, PRM2, FRS2 andACSBG 2. Wherein the expression of the SMCP and ACSBG2 genes can be detected only in a normal control group; the PRM2 gene is only expressed in the normal control group and the group punctured with sperm; the expression level of the AR gene is significantly different between the normal control group and the punctured sperm group (P <0.05), the TDRP7 gene is significantly different between the support cell only group and the sperm production blocking group compared with the normal control group (P <0.05), and the ARID5B gene is significantly different between the normal control group and the support cell only group (P < 0.05).
The above disclosure is only for the purpose of illustrating the preferred embodiments of the present invention and is not to be construed as limiting the scope of the present invention, therefore, the appended claims are to be accorded the full scope of the invention.

Claims (5)

a disposable 20ml medicine dissolving empty needle (a needle head with a side hole) is used as a puncture needle; fixing the testicle on the side of the left hand three fingertips to cling to the subcutaneous part of the scrotum, taking the middle upper part of the testicle at the puncture part, puncturing the scrotum by 1% lidocaine local anesthesia at the puncture point, utilizing a No. 5 half needle injector to puncture the scrotum until the white membrane of the testicle makes an access, holding a hollow needle for drug dissolution for puncture by the right hand to puncture into the parenchyma of the testicle along the access through the skin, repeatedly pulling the needle plug for a plurality of times, then pulling the needle plug to the position of 20ml to form negative pressure, and pulling out the needle head under the state of the.
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CN117535394A (en)*2023-09-252024-02-09中国人民解放军海军军医大学第一附属医院Application of methylation detection of sperm specific gene fragment in assessment of sperm DNA damage
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