Disclosure of Invention
In order to solve the above problems, the present invention provides a novel kit and method. The invention provides a technical method for carrying out fluorescence in situ hybridization by using a special double-chain fluorescence reduction probe, which is simple and rapid in operation, thereby obviously reducing the technical difficulty and the detection cost of in situ hybridization.
The gene detection kit comprises the following probes:
a sequence:
5′–CTGAAGCGCTTCGCGAGCCM1M2N1N2N3N4N5…N6N7N8N9N10M3M4CTGAAGCGCTTCGCGAGCC-3'; wherein N is1N2N3N4N5…N6N7N8N9N10For the complementary sequence of the gene to be examined or of a fragment thereof, M1M2And M3M4Is a linker sequence;
b sequence 5' -n5n4n3n2n1m2m1TAGGCTCGCGAAGC-3′;n1n2n3n4n5And N1N2N3N4N5Is complementary to the sequence of (1), m1m2And M1M2The sequence of (a) is complementary;
c sequence 5' -GCGAAGCGCTTCAGm4m3n10n9n8n7n6-3′;n6n7n8n9n10And N6N7N8N9N10Is complementary to the sequence of (1), m3m4And M3M4The sequence of (a) is complementary;
d sequence is 5 '-fluorescent molecule-GGCTCGCGAAGCGCTTCAG-fluorescent molecule-3'
The E sequence is 5 '-fluorescence quenching molecule-CTGAAGCGCTTCGCGAGC-fluorescence quenching molecule-3'.
In the kit, the B sequence and the C sequence are combined with the A sequence, and the dosage of the B sequence and the C sequence can be combined with all the A sequence; combining the D sequence with the A sequence, wherein the D sequence can be used in an amount capable of combining all the A sequences; the D sequence is combined with the E sequence, and the E sequence can be used in an amount capable of combining all the D sequences.
Preferably, the molar ratio of the A sequence to the B sequence is 1: (2-7); the molar ratio of the A sequence to the C sequence is 1: (2-7); the molar ratio of the A sequence to the D sequence is 1: (2-7); the molar ratio of the D sequence to the E sequence is 1: (2-5);
more preferably, the molar ratio of the A sequence, the B sequence, the C sequence, the D sequence and the E sequence is 1:5:5:3: 6.
The invention also provides a kit, which comprises the following probes:
a sequence:
5′–CTGAAGCGCTTCGCGAGCCM1M2N1N2N3N4N5…N6N7N8N9N10M3M4CTGAAGCGCTTCGCGAGCC-3'; wherein N is1N2N3N4N5…N6N7N8N9N10For the complementary sequence of the gene to be examined or of a fragment thereof, M1M2And M3M4Is a linker sequence;
the sequence B is 5' -n5n4n3n2n1m2m1TAGGCTCGCGAAGC-3′;n1n2n3n4n5And N1N2N3N4N5Is complementary to the sequence of (1), m1m2And M1M2The sequence of (a) is complementary;
a C sequence of 5' -GCGAAGCGCTTCAGm4m3n10n9n8n7n6-3′;n6n7n8n9n10And N6N7N8N9N10Is complementary to the sequence of (1), m3m4And M3M4The sequence of (a) is complementary;
and F sequence:
5′-CCAGAGCGAGCAGTGTCAAGGCTCGCGAAGCGCTTCAGAACCA GAGCGAGCAGTGTC-3′
sequence of fifth F-R1 5'-CGAGCCTTGACACTGCTCG-3'
Sixthly, a F-R2 sequence 5'-GCTCGCTCTGGTTCTGAAGC-3'
Bare G sequences
5′-GAACAGTCGTGAACATCTGACACTGCTCGCTCTGGTGAACAGTC GTGAACATC-3′
And G-R1 sequence:
5′-GCAGTGTCAGATGTTCAC-3′
sequence of the self-lifting G-R2:
5′-GACTGTTCACCAGAGCG-3′
(10) h sequence:
5 '-fluorescent molecule-GATGTTCACGACTGTTC-fluorescent molecule-3'
The following series I:
5 '-quenching molecule-GAACAGTCGTGAACAT-quenching molecule-3'.
In the kit, the B sequence and the C sequence are combined with the A sequence, and the dosage of the B sequence and the C sequence can be combined with all the A sequence; f sequence is combined with A sequence, and the dosage of the F sequence can be combined with all A sequences; F-R1 sequence and F-R2 sequence are combined with the F sequence, and the F-R1 sequence and the F-R2 sequence can be used in combination with all the F sequences; g sequence is combined with F sequence, and the dosage of G sequence can be combined with all F sequences; the G-R1 sequence and the G-R2 sequence are combined with the G sequence, and the G-R1 sequence and the G-R2 sequence can be combined with all the G sequences; h sequence is combined with G sequence, and the dosage of H sequence can be combined with all G sequences; the I sequence is combined with the H sequence, and the I sequence can be used in an amount capable of combining all the H sequences.
Preferably, the molar ratio of the A sequence to the B sequence is 1: (2-7); the molar ratio of the A sequence to the C sequence is 1: (2-7); the molar ratio of the A sequence to the F sequence is 1: (2-7); the molar ratio of the F sequence to the F-R1 sequence is 1: (2-7); the molar ratio of the F sequence to the F-R2 sequence is 1: (2-7); the molar ratio of the F sequence to the G sequence is 1: (2-7); the molar ratio of the G sequence to the G-R1 sequence is 1: (2-7); the molar ratio of the G sequence to the G-R2 sequence is 1: (2-7); the molar ratio of the G sequence to the H sequence is 1: (2-7); the molar ratio of the H sequence to the I sequence is 1: (2-5);
preferably, the molar ratio of the A sequence, the B sequence, the C sequence, the F-R1 sequence, the F-R2 sequence, the G-R1 sequence, the G-R2 sequence, the H sequence and the I sequence is 1:2: 2.4:4: 8:8: 16.
In the aforementioned kit, said M1M2Is TA or AC, and/or, the M3M4Is AT, CA or TC.
The gene to be detected or a partial fragment sequence of the gene to be detected, which is represented by "N1N 2N3N4N5 … N6N7N8N9N 10" in the present invention, may have any length, and preferably has a length of 10 bp or more.
The gene to be detected is any human body, rat and mouse gene.
The fluorescent molecule is FAM (6-carboxyfluorescein), or TET (tetrachloro-6-carboxyfluorescein), HEX (hexachloro-6-methylfluorescein), JOE (2, 7, -dimethyl-4, 5, dichloro-6-carboxyfluorescein).
The fluorescence quenching molecule is TAMRA (6-carboxyl-4 methyl rhodamine) or BHQ (black hole quenching group).
The kit further comprises a buffer.
The buffer solution comprises TE buffer solution and prehybridization solution; TE buffer (containing 10mmol/L tris (tromethamine), 1mmol/L EDTA, pH 8.0); prehybridization solution (salt solution containing no probe and the same components as the hybridization solution, including 60mmol/L tris (tromethamine), 50mmol/L NaCl,1mmol/L EDTA, 0.5% SDS (sodium dodecyl sulfate), 5% formamide, pH 7.4.
The invention also provides a gene detection method, which comprises the following steps (avoiding light in the whole process):
(1) dissolving the probes in the kit in a TE buffer solution to obtain a mixed solution PM1 containing all probe sequences;
(2) adding the mixed solution PM1 into the pre-hybridization solution to prepare a hybridizationbuffer solution PM 2;
(3) taking a hybridization buffer solution PM2 to be dripped on a chromosome dripping sheet or a tissue slice to be detected in a dark process, covering a cover glass, and sealing with an adhesive;
(4) heating the slide to 95-98 ℃ for denaturation for 3-5 min, then rapidly cooling to 45-70 ℃ and preserving heat for 20-60 min to complete molecular hybridization of the universal fluorescent probe and the target nucleic acid, and then cooling to 30-50 ℃ and preserving heat for 40-60 min;
(5) adding the quenching prevention blocking tablet, and observing a hybridization signal under a fluorescence microscope.
Preferably, step (4) is: denaturing the glass slide at 95 ℃ or 98 ℃ for 3min, rapidly cooling to 68 ℃, preserving heat for 30min, naturally cooling to 40 ℃, preserving heat for 50min, and naturally cooling to room temperature;
the step (5) is as follows: adding the anti-quenching sealing tablet, placing a cover glass, and observing and photographing under 488nm, 405nm and 670nm exciting lights under a fluorescence microscope.
The invention has the beneficial effects that: the fluorescence reduction probe technology of the invention enables the fluorescence of the fluorescence labeling probe which is not hybridized with the target nucleic acid to be quenched by the quenching group of the general quenching probe, so as to achieve the effect of removing the non-hybridized fluorescence signal only by controlling the hybridization temperature without complicated and uncontrollable washing steps, greatly improve the nucleic acid hybridization efficiency, save time and labor, rapidly complete the fluorescence in situ hybridization and detect the specific gene or the expression distribution thereof, the method needs 2 hours to complete, is improved by more than 10 hours compared with the traditional FISH method, and is an improvement of the FISH method.
The method comprises the steps of detecting a probe of a site, synthesizing a set of probes, wherein the total number of the probe bases is 240 bases, each two OD (optical density) is 1.5 yuan, labeling two fluorescein, each 600 yuan, labeling two quenching groups, each 500 yuan, the total number is 2560 yuan, and the total number is 2600 yuan with other conventional reagents of 40 yuan, so that the target gene can be detected 400 times, and the production of 4 kits (100 times/box) can be completed. The cost of each kit is 650 yuan, each gene detection is 6.5 yuan, 4000 yuan/25 times of in situ hybridization reagents sold on the market at present, and each gene detection is 160 yuan, so that the kit has obvious cost advantage.
The traditional FISH method has long consumption time, which needs more than ten hours, and the invention only needs 2 hours to complete the experiment, and the time cost of the invention is lower.
The invention can be used for detecting any gene segment of human body, rat and mouse by specific design and the fixed sequence in the kit can not be combined with any gene of human body, rat and mouse, thus overcoming the problem that the specific design is needed when each gene is detected by the traditional method.
The kit and the method can be suitable for detecting any gene of a human body, and in the kit, the fluorescent sequence playing a key role is a universal sequence, so the cost is low.
Obviously, many modifications, substitutions, and variations are possible in light of the above teachings of the invention, without departing from the basic technical spirit of the invention, as defined by the following claims.
The present invention will be described in further detail with reference to the following examples. This should not be understood as limiting the scope of the above-described subject matter of the present invention to the following examples. All the technologies realized based on the above contents of the present invention belong to the scope of the present invention.
Detailed Description
Example 1 Gene detection method of the present invention
1. Constitution of detection kit
The schematic diagram is shown in figure 1:
a sequence:
5′–CTGAAGCGCTTCGCGAGCCM1M2N1N2N3N4N5…N6N7N8N9N10M3M4CTGAAGCGCTTCGCGAGCC-3'; wherein N is1N2N3N4N5…N6N7N8N9N10For the complementary sequence of the gene to be examined or of a fragment thereof, M1M2And M3M4Is a linker sequence;
b sequence 5' -n5n4n3n2n1m2m1TAGGCTCGCGAAGC-3′;n1n2n3n4n5And N1N2N3N4N5Is complementary to the sequence of (1), m1m2And M1M2The sequence of (a) is complementary;
c sequence 5' -GCGAAGCGCTTCAGm4m3n10n9n8n7n6-3′;n6n7n8n9n10And N6N7N8N9N10Is complementary to the sequence of (1), m3m4And M3M4The sequence of (a) is complementary;
d sequence is 5 '-FAM-GGCTCGCGAAGCGCTTCAG-FAM-3'
The sequence E is 5 '-. TAMRA-CTGAAGCGCTTCGCGAGC-TAMRA-3';
wherein M is1M2Is TA or AC, and/or, M3M4Is AT, CA or TC.
Buffer solution: TE buffer (containing 10mmol/L tris (tromethamine), 1mmol/L EDTA, pH 8.0); prehybridization solution (salt solution containing no probe and the same components as the hybridization solution, including 60mmol/L tris (tromethamine), 50mmol/L NaCl,1mmol/L EDTA, 0.5% SDS (sodium dodecyl sulfate), 5% formamide, pH 7.4.)
2. Detection method
(1) Dissolving the probes in TE buffer solution respectively to obtain mixed solution PM1 with the concentration of 1umol/L, B sequence, 5umol/L, C sequence, 5umol/L, D sequence, 3umol/L, E sequence and 6umol/L sequence; adding 1ul of mixed solution PM1 into 49ul of prehybridization solution to prepare hybridizationbuffer solution PM 2;
(2) taking a sample to be detected, dripping 25ul of hybridization solution PM2, covering with a glass slide, and sealing with an adhesive;
(3) denaturing the glass slide at 95 ℃ for 3min, rapidly cooling to 68 ℃ and preserving heat for 30min, naturally and slowly cooling to 40 ℃ and preserving heat for 50min, and naturally cooling to room temperature;
(4) after the slide is taken out, the anti-quenching sealing tablet is added, a cover glass is put on the anti-quenching sealing tablet, and the anti-quenching sealing tablet is observed and photographed under 488nm, 405nm and 670nm exciting lights under a fluorescence microscope.
Example 2 Gene detecting method of the present invention
1. Constitution of detection kit
The schematic diagram is shown in fig. 2:
a sequence:
5'–CTGAAGCGCTTCGCGAGCCM1M2N1N2N3N4N5…N6N7N8N9N10M3M4CTGAAGCGCTTCGCGAGCC-3'; wherein N is1N2N3N4N5…N6N7N8N9N10For the complementary sequence of the gene to be examined or of a fragment thereof, M1M2And M3M4Is a linker sequence;
wherein M is1M2Is TA or AC, and/or, M3M4Is AT, CA or TC.
The sequence B is 5' -n5n4n3n2n1m2m1TAGGCTCGCGAAGC-3′;n1n2n3n4n5And N1N2N3N4N5Is complementary to the sequence of (1), m1m2And M1M2The sequence of (a) is complementary;
a C sequence of 5' -GCGAAGCGCTTCAGm4m3n10n9n8n7n6-3′;n6n7n8n9n10And N6N7N8N9N10Is complementary to the sequence of (1), m3m4And M3M4The sequence of (a) is complementary;
and F sequence:
5′-CCAGAGCGAGCAGTGTCAAGGCTCGCGAAGCGCTTCAGAACCA GAGCGAGCAGTGTC-3′
sequence of fifth F-R1 5'-CGAGCCTTGACACTGCTCG-3'
Sixthly, a F-R2 sequence 5'-GCTCGCTCTGGTTCTGAAGC-3'
Bare G sequences
5′-GAACAGTCGTGAACATCTGACACTGCTCGCTCTGGTGAACAGTC GTGAACATC-3′
And G-R1 sequence:
5′-GCAGTGTCAGATGTTCAC-3′
sequence of the self-lifting G-R2:
5′-GACTGTTCACCAGAGCG-3′
(10) h sequence:
FAM-GATGTTCACGACTGTTC-FAM
the following series I:
TAMRA-GAACAGTCGTGAACAT-TAMRA。
buffer solution: TE buffer (containing 10mmol/L tris (tromethamine), 1mmol/L EDTA, pH 8.0); prehybridization solution (salt solution containing no probe and the same components as the hybridization solution, including 60mmol/L tris (tromethamine), 50mmol/L NaCl,1mmol/L EDTA, 0.5% SDS (sodium dodecyl sulfate), 5% formamide, pH 7.4.)
2. Detection method
(1) Dissolving the probes in the 11 in TE buffer solution respectively to obtain probe solutions with the concentration of 10ummol/L, and taking 1uL of A sequence solution, 2uL of B sequence, 2uL of C sequence, 2uL of F sequence, 4uL of F-R1 sequence, 4uL of F-R2 sequence, 4uL of G sequence, 8uL of G-R1 sequence, 8uL of G-R2 sequence, 8uL of H sequence and 16uL of I sequence to obtainmixed solution PM 1; adding 1ul of mixed solution PM1 into 49ul of prehybridization solution to prepare hybridizationbuffer solution PM 2;
(2) taking a sample to be detected, dripping 25ul of hybridization solution PM2, covering with a glass slide, and sealing with an adhesive;
(3) denaturing the glass slide at 98 ℃ for 3min, rapidly cooling to 68 ℃ and preserving heat for 30min, naturally and slowly cooling to 40 ℃ and preserving heat for 50min, and naturally cooling to room temperature;
(4) after the slide glass was taken out, it was observed under a fluorescence microscope under excitation light of 488nm, 405nm, and 670nm, and photographed.
The main performance indexes are as follows:
1. the sensitivity of nucleic acid detection reaches fM/LGrade:
the nucleic acid detection technology can detect 10 copies/. mu.L of target genes, and the FM sensitivity is 0.01667 fM/L.
2. Method specificity, enabling efficient recognition of single base differences in nucleic acid sequences:
a fluorescent molecular probe is designed according to the nucleic acid base pairing principle strictly, in-situ hybridization is carried out, single base recognition is achieved, and the phenomenon that the probe A is closed by combining the probe and no fluorescent hybridization signal exists if no target base sequence exists.
The beneficial effects of the invention are illustrated by way of experimental examples as follows:
experimental example 1 detection of brain cell edema Gene AQP4 Gene by the method of the present invention
1. Detection method
The sample to be detected is brain tissue nerve cells with rat cerebral edema.
The method of the invention, according to the method of example 1, detects:
(1) firstly, a set of fluorescent reduction probes is designed and synthesized according to the mRNA sequence of AQP4 gene, and the sequence and the label are respectively:
a sequence:
5′-.CTGAAGCGCTTCGCGAGCCTAGCTACATGGAGGTGGAGGACAA CCGATCTGAAGCGCTTCGCGAGCC-3′
sequence B of 5'— CCATGTAGCTAGGCTCGCGAAGC-3'
C sequence of 5 '-GCGAAGCGCTTCAGATCGGTTGTC-3'
D sequence is 5 '-FAM-GGCTCGCGAAGCGCTTCAG-FAM-3'
The sequence E is 5 '-. TAMRA-CTGAAGCGCTTCGCGAGC-TAMRA-3';
(2) dissolving the probes in TE buffer solution respectively, and making the mixed solution PM1 with the concentration of 1umol/L, B sequence, 5umol/L, C sequence, 5umol/L, D sequence, 3umol/L, E sequence and 6umol/L sequence; adding 1ul of mixed solution PM1 into 49ul of prehybridization solution to prepare hybridizationbuffer solution PM 2;
(3) taking rat brain tissue slices, keeping the rat away from light in the whole process, dripping 25ul of hybridization solution PM2 containing a fluorescent reduction probe, covering a glass slide, and sealing by using an adhesive;
(4) denaturing the glass slide at 95 ℃ for 3min, rapidly cooling to 68 ℃ and preserving heat for 30min, naturally and slowly cooling to 40 ℃ and preserving heat for 50min, and naturally cooling to room temperature;
(5) the slide glass was taken out and observed under a fluorescence microscope under 670nm excitation light and photographed.
Method for negative control: the method of the present invention is the same except that the A sequence is not used.
2. As a result:
as shown in FIGS. 3 to 4, the imaging signal of the red portion of the fluorography was comparatively analyzed using a two-photon confocal fluorescence microscope and Image J (Fiji is just) software.
It can be seen that the negative control has no red hybridization signal, while the positive control has a relatively strong fluorescent hybridization signal, indicating that the method of the present invention can accurately detect, whereas the removal of the specific sequence cannot accurately detect.
Experimental example 2 detection of telomere Gene by the method of the present invention
1. Detection method
The sample to be detected is rat liver tissue.
Method for negative control: the method of the present invention is the same except that the A sequence is not used.
The method of the invention, according to the method of example 1, detects:
(1) the sequences and markers are respectively:
a sequence
HCR-A:5’CTGAAGCGCTTCGCGAGCCTAGGGTTAGGGTTAGGGTTAGGGTTAGGGATCTG AAGCGCTTCGCGAGCC-3’
B sequence: HCR-B CCTAACCCTAGGCTCGCGAAGC
C sequence: HCR-C: GCGAAGCGCTTCAGATCCCTAACC
D sequence of HCR-D:5 '-FAM-GGCTCGCGAAGCGCTTCAG-FAM-3'
The sequence E is HCR-E5 '-. TAMRA-CTGAAGCGCTTCGCGAGC-TAMRA-3';
(2) dissolving the probes in TE buffer solution respectively, and making the mixed solution PM1 with the concentration of 1umol/L, B sequence, 5umol/L, C sequence, 5umol/L, D sequence, 3umol/L, E sequence and 6umol/L sequence; adding 1ul of mixed solution PM1 into 49ul of prehybridization solution to prepare hybridizationbuffer solution PM 2;
(3) taking a liver tissue section of a mouse, dripping 25ul of hybridization solution PM2 containing a fluorescent reduction probe, covering a glass slide, and sealing by sealing glue;
(4) in dark, denaturing the glass slide at 95 ℃ for 3min, rapidly cooling to 68 ℃ and preserving heat for 30min, naturally and slowly cooling to 40 ℃ and preserving heat for 50min, and naturally cooling to room temperature;
(5) the slide was taken out and observed under excitation light of 405nm under a fluorescence microscope and photographed.
Method for negative control: the method of the present invention is the same except that the A sequence is not used.
2. Results
As shown in FIGS. 5 to 6, the developed signal of the blue fluorescence portion of the fluorography was compared and analyzed with a negative control using a two-photon confocal fluorescence microscope and Image J (Fiji is just) software,
it can be seen that the negative control has almost no signal, while the positive control has a relatively strong blue fluorescent hybridization signal, indicating that the method of the invention can detect accurately, whereas the removal of the specific sequence cannot detect.
Experimental example 3 detection of IL-6 Gene by the method of the present invention
1. Detection method
The positive sample was spleen tissue from a mouse with sepsis as a model 24 hours after the assay in example 1, and the negative control sample was spleen tissue from a normal mouse.
Sepsis causes an increase in the expression of the IL-6 gene in the spleen of a mouse, and the IL-6 gene of spleen tissue 24 hours after the sepsis mouse should be significantly increased compared to a normal mouse.
(1) The sequences and markers are respectively:
IL-10-A probe:
CTGAAGCGCTTCGCGAGCCACAGAGGGGAGAAATCGATGACAGCGCCTCACTGAAGCGCTTC GCGAGCC
IL-10-B Probe CTCCCCTCTGTGGCTCGCGAAGC
IL-10-C Probe CGAAGCGCTTCAGTGAGGCGCTG
D probe sequence of HCR-D5 '-FAM-GGCTCGCGAAGCGCTTCAG-FAM-3'
E probe sequence of HCR-E5 '-TAMRA-CTGAAGCGCTTCGCGAGC-TAMRA-3'
(2) Dissolving the probes in TE buffer solution respectively, and making the mixed solution PM1 with the concentration of 1umol/L, B sequence, 5umol/L, C sequence, 5umol/L, D sequence, 3umol/L, E sequence and 6umol/L sequence; adding 1ul of mixed solution PM1 into 49ul of prehybridization solution to prepare hybridizationbuffer solution PM 2;
(3) taking a liver tissue section of a mouse, dripping 25ul of hybridization solution PM2 containing a fluorescent reduction probe, covering a glass slide, and sealing by sealing glue;
(4) in dark, denaturing the glass slide at 95 ℃ for 3min, rapidly cooling to 68 ℃ and preserving heat for 30min, naturally and slowly cooling to 40 ℃ and preserving heat for 50min, and naturally cooling to room temperature;
(5) the slide was taken out and observed under 488nm excitation light under a fluorescence microscope and photographed.
2. Results
The results are shown in FIGS. 7 to 8, and the green part development signals of the fluorography were compared and analyzed using a two-photon confocal fluorescence microscope and ImageJ software.
It can be seen that the fluorescence signal of the negative control is very weak, while the green fluorescence signal of the positive control is strong,
the method can accurately detect, but cannot accurately detect when the specific sequence is removed.
Experimental example 4 detection of IL-10 Gene by the method of the present invention
1. Detection method
The positive sample was liver tissue from mice with sepsis (120 mg/kg of safflor yellow injection in the protected group) 24 hours after molding, and the negative control sample was liver tissue from normal mice, which were examined according to the method of example 1.
After sepsis, the injection of 120mg/kg of safflor yellow can maintain the high expression of IL-10 in the liver of the mice, and compared with normal mice, the IL-10 of spleen tissues 24 hours after the sepsis mice should be obviously improved.
(1) The sequences and markers are respectively:
IL-10-A probe:
CTGAAGCGCTTCGCGAGCCACAGAGGGGAGAAATCGATGACAGCGCCTCACTGAAGCGCTTC GCGAGCC
IL-10-B Probe CTCCCCTCTGTGGCTCGCGAAGC
IL-10-C Probe CGAAGCGCTTCAGTGAGGCGCTG
D probe sequence of HCR-D:5 '-FAM-GGCTCGCGAAGCGCTTCAG-FAM-3'
E probe sequence HCR-E5 '-. TAMRA-CTGAAGCGCTTCGCGAGC-TAMRA-3'
(2) Dissolving the probes in TE buffer solution respectively, and making the mixed solution PM1 with the concentration of 1umol/L, B sequence, 5umol/L, C sequence, 5umol/L, D sequence, 3umol/L, E sequence and 6umol/L sequence; adding 1ul of mixed solution PM1 into 49ul of prehybridization solution to prepare hybridizationbuffer solution PM 2;
(3) taking a liver tissue section of a mouse, dripping 25ul of hybridization solution PM2 containing a fluorescent reduction probe, covering a glass slide, and sealing by sealing glue;
(4) in dark, denaturing the glass slide at 95 ℃ for 3min, rapidly cooling to 68 ℃ and preserving heat for 30min, naturally and slowly cooling to 40 ℃ and preserving heat for 50min, and naturally cooling to room temperature;
(5) the slide was taken out and observed under excitation light of 405nm under a fluorescence microscope and photographed.
2. Results
The results are shown in FIGS. 9 to 10, and the fluorescence-photographed blue portion imaging signals were analyzed by comparison using a two-photon confocal fluorescence microscope and ImageJ software.
It can be seen that the fluorescence signal of the negative control is very weak, while the blue fluorescence signal of the positive control is strong, and the detection result is consistent with the property of the tissue, which shows that the method of the invention can effectively and accurately detect.
Experimental example 5 detection of IL-1. beta. Gene by the method of the present invention
1. Detection method
The positive sample was lung tissue from mice molded with sepsis 24 hours after the assay as in example 1, and the negative control sample was lung tissue from normal mice.
(1) The sequences and markers are respectively:
IL-1. beta. -A probe:
IL-1. beta. -B Probe CAGCACCACTAGGCTCGCGAAG
IL-1 beta-C Probe GAAGCGCTTCAGGAGTTCCCCAAC
D probe sequence of HCR-D:5 '-FAM-GGCTCGCGAAGCGCTTCAG-FAM-3'
E probe sequence HCR-E5 '-. TAMRA-CTGAAGCGCTTCGCGAGC-TAMRA-3'
(2) Dissolving the probes in TE buffer solution respectively, and making the mixed solution PM1 with the concentration of 1umol/L, B sequence, 5umol/L, C sequence, 5umol/L, D sequence, 3umol/L, E sequence and 6umol/L sequence; adding 1ul of mixed solution PM1 into 49ul of prehybridization solution to prepare hybridizationbuffer solution PM 2;
(3) taking a liver tissue section of a mouse, dripping 25ul of hybridization solution PM2 containing a fluorescent reduction probe, covering a glass slide, and sealing by sealing glue;
(4) in dark, denaturing the glass slide at 95 ℃ for 3min, rapidly cooling to 68 ℃ and preserving heat for 30min, naturally and slowly cooling to 40 ℃ and preserving heat for 50min, and naturally cooling to room temperature;
(5) the slide was taken out and observed under 488nm excitation light under a fluorescence microscope and photographed.
2. Results
As shown in FIGS. 11 to 12, the green part development signals of the fluorography were compared and analyzed using a two-photon confocal fluorescence microscope and ImageJ software.
It can be seen that the fluorescence signal of the negative control is very weak, the fluorescence signal of the positive control is stronger, the fluorescence intensity quantification has statistical significance, and the detection result is consistent with the property of the tissue, thus the method can effectively and accurately detect.
Experimental example 6 detection of telomere Gene by the method of the present invention
1. Detection method
The sample to be tested was rat liver tissue, which was examined according to the method of example 2.
Method for negative control: the method of the present invention is the same except that the A sequence is not used.
a. The sequences and markers are respectively:
⑴HCR-A:
5’
⑵HCR-A-R1:CCTAACCCTAGGCTCGCGAAGC
⑶HCR-A-R2:GCGAAGCGCTTCAGTTCCCTAACC
⑷HCR-B:
5’CCAGAGCGAGCAGTGTCAAGGCTCGCGAAGCGCTTCAGAACCAGAGCGAGCAGTGTC ⑸HCR-B-R1:CGAGCCTTGACACTGCTCG
⑹HCR-B-R2:GCTCGCTCTGGTTCTGAAGC
⑺HCR-C
GAACAGTCGTGAACATCTGACACTGCTCGCTCTGGTGAACAGTCGTGAACATC
⑻HCR-C-R1:
GCAGTGTCAGATGTTCA⑼HCR-C-R2:
GACTGTTCACCAGAGCG
(10)HCR-D:
FAM-GATGTTCACGACTGTTC-FAM
⑾HCR-E:
TAMRA-GAACAGTCGTGAACAT-TAMRA
b. detection method
(1) Dissolving the probes in the 11 in TE buffer solution respectively to obtain probe solutions with the concentration of 10ummol/L, and taking 1uL of A sequence solution, 2uL of B sequence, 2uL of C sequence, 2uL of F sequence, 4uL of F-R1 sequence, 4uL of F-R2 sequence, 4uL of G sequence, 8uL of G-R1 sequence, 8uL of G-R2 sequence, 8uL of H sequence and 16uL of I sequence to obtainmixed solution PM 1; adding 1ul of mixed solution PM1 into 49ul of prehybridization solution to prepare hybridizationbuffer solution PM 2;
(2) taking a sample to be detected, dripping 25ul of hybridization solution PM2, covering with a glass slide, and sealing with an adhesive;
(3) denaturing the glass slide at 98 ℃ for 3min, rapidly cooling to 68 ℃ and preserving heat for 30min, naturally and slowly cooling to 40 ℃ and preserving heat for 50min, and naturally cooling to room temperature;
(4) the slide was taken out and observed under 488nm excitation light under a fluorescence microscope and photographed.
2. Results
The results are shown in FIGS. 13 to 14, and the green part development signals of the fluorography were compared and analyzed using a two-photon confocal fluorescence microscope and ImageJ software.
It can be seen that the negative control has almost no signal, while the positive control has a relatively strong fluorescence hybridization signal, indicating that the method of the invention can accurately detect, while the removal of the specific sequence cannot accurately detect.
In conclusion, the kit and the method can effectively detect the gene and have good application prospect.
Sequence listing
<110> Sichuan university Hospital in western China
<120> Gene detection kit comprising universal fluorescent subtraction Probe nucleic acid molecule and use thereof
<130> GY026-18P1368
<160> 14
<170> SIPOSequenceListing 1.0
<210> 1
<211> 19
<212> DNA
<213> fixed sequence in the first half of A sequence (artificial sequence)
<400> 1
ctgaagcgct tcgcgagcc 19
<210> 2
<211> 19
<212> DNA
<213> fixed sequence in the latter half of the A sequence (artificial sequence)
<400> 2
ctgaagcgct tcgcgagcc 19
<210> 3
<211> 14
<212> DNA
<213> B sequence fixed sequence (artificial sequence)
<400> 3
taggctcgcg aagc 14
<210> 4
<211> 13
<212> DNA
<213> C sequence fixed sequence (artificial sequence)
<400> 4
gcgaagcgct tca 13
<210> 5
<211> 19
<212> DNA
<213> D sequence (artificial sequence)
<400> 5
ggctcgcgaa gcgcttcag 19
<210> 6
<211> 18
<212> DNA
<213> E sequence (artificial sequence)
<400> 6
ctgaagcgct tcgcgagc 18
<210> 7
<211> 57
<212> DNA
<213> F sequence (artificial sequence)
<400> 7
ccagagcgag cagtgtcaag gctcgcgaag cgcttcagaa ccagagcgag cagtgtc 57
<210> 8
<211> 19
<212> DNA
<213> F-R1 sequence (artificial sequence)
<400> 8
cgagccttga cactgctcg 19
<210> 9
<211> 20
<212> DNA
<213> F-R2 sequence (artificial sequence)
<400> 9
gctcgctctg gttctgaagc 20
<210> 10
<211> 53
<212> DNA
<213> G sequence (artificial sequence)
<400> 10
gaacagtcgt gaacatctga cactgctcgc tctggtgaac agtcgtgaac atc 53
<210> 11
<211> 18
<212> DNA
<213> G-R1 sequence (artificial sequence)
<400> 11
gcagtgtcag atgttcac 18
<210> 12
<211> 17
<212> DNA
<213> G-R2 sequence (artificial sequence)
<400> 12
gactgttcac cagagcg 17
<210> 13
<211> 17
<212> DNA
<213> H sequence (artificial sequence)
<400> 13
gatgttcacg actgttc 17
<210> 14
<211> 16
<212> DNA
<213> I sequence (artificial sequence)
<400> 14
gaacagtcgt gaacat 16