CN105518139B - CRISPR-Cas9 specific knockout method of porcine FGL2 gene and sgRNA used to specifically target FGL2 gene - Google Patents

Abstract

Translated fromChinese

本发明公开了一种运用CRISPR‑Cas9特异性敲除猪FGL2基因的方法及用于特异性靶向FGL2基因的sgRNA。本发明的特异性靶向FGL2基因的sgRNA在FGL2基因上的靶序列符合5’‑N(20)NGG‑3’的序列排列规则，其中N(20)表示20个连续的碱基，其中每个N表示A或T或C或G；在FGL2基因上的靶序列位于FGL2基因的外显子编码区；在FGL2基因上的靶序列是唯一的。本发明的sgRNA用于CRISPR‑Cas9特异性敲除猪FGL2基因的方法中，能够快速、精确、高效、特异性地敲除猪FGL2基因，有效地解决构建FGL2基因敲除猪周期长和成本高的问题。

The invention discloses a method for specifically knocking out pig FGL2 gene by using CRISPR-Cas9 and sgRNA for specifically targeting FGL2 gene. The target sequence of the sgRNA specifically targeting the FGL2 gene of the present invention on the FGL2 gene conforms to the sequence arrangement rule of 5'-N(20)NGG-3', wherein N(20) represents 20 consecutive bases, wherein each N represents A or T or C or G; the target sequence on the FGL2 gene is located in the exon coding region of the FGL2 gene; the target sequence on the FGL2 gene is unique. The sgRNA of the present invention is used in the method for CRISPR-Cas9 to specifically knock out the pig FGL2 gene, and can quickly, accurately, efficiently and specifically knock out the pig FGL2 gene, and effectively solves the problem of long cycle and high cost of constructing FGL2 gene knockout pigs The problem.

Description

Method for specifically knocking out pig FGL2 gene by CRISPR-Cas9 and sgRNA for specifically targeting FGL2 gene

Technical Field

The invention relates to the technical field of genetic engineering, in particular to the technical field of gene knockout, and specifically relates to a method for specifically knocking out a porcine FGL2 gene by using CRISPR-Cas9 and sgRNA for specifically targeting FGL2 gene.

Background

Organ transplantation is the most effective treatment for organ failure. To date, nearly a million patients worldwide have continued their lives through organ transplantation. With the aging population and the advancement of medical technology, more and more patients need to undergo organ transplantation, but the shortage of donor organs severely restricts the development of organ transplantation. Taking kidney transplantation as an example, as many as 30 million patients need kidney transplantation every year in China, but no more than 1 million donor kidneys are available for transplantation, and most patients die of renal failure. The need for organ transplantation has not been met by means of post-mortem organ donation. The genetic engineering of other species to provide organs suitable for human transplantation has become a major approach to the problem of organ shortage in human donors.

At present, pigs become the most ideal source of xenogeneic organs according to the evaluation in many aspects such as biosafety, physiological function indexes, economy, rare species protection and the like. However, there is a great difference between pigs and humans, and a strong immune rejection reaction is generated by directly transplanting the organs of pigs to humans. Therefore, the genetic engineering of pigs to produce organs suitable for human transplantation is the ultimate goal of xenotransplantation.

Fibrinogen-like protein 2(FGL2) has a highly conserved Fibrinogen domain that can be either expressed on the surface of the cell membrane or secreted extracellularly, FGL2 on the membrane surface is a direct prothrombinase, while FGL2 secreted extracellularly has immunomodulatory effects. FGL2 promotes the conversion of procoagulant enzymes to thrombin in the absence of the classical prothrombinase complex. Cellulose deposition is a typical feature of AVR. Deletion of FGL2 inhibits cellulose deposition using antibody-neutralized or FGL2 knockout mice. Thrombin is a potential immune activation factor that activates platelets and acts directly on vascular smooth muscle cells and vascular endothelial cells, which promote thrombus formation. Indeed, FGL 2-deficient mice as donors reduced AVR production in a mouse-to-rat xenograft model. Since FGL2 has such an important role in AVR, constructing FGL 2-deleted genetically modified pigs would likely make an important contribution to xenotransplantation.

Currently, common gene knockout technologies include Homologous Recombination (HR) technology, Transcription activation Effector-Like Nuclease (TALEN) technology, Zinc Finger Nuclease (ZFN) technology, and recently developed Regularly Clustered Short interspersed Palindromic Repeat (CRISPR) technology. HR technology is inefficient due to recombination (efficiency is only about 10)^-6) The screening work for mutants is very time consuming and inefficient and has gradually been replaced. The cutting efficiency of the TALEN technology and the ZFN technology can generally reach 20%, but protein modules capable of identifying specific sequences need to be constructed, and the earlier work is complicated and time-consuming. The module design of the ZFN technology is complex and has high miss rate, and its application is limited.

CRISPR is an acquired immune system derived from prokaryotes, the complex that performs the interference function consisting of the protein Cas and CRISPR-rna (crrna). Three types of the system have been found, wherein the Cas9 system in the second type has simple composition and is actively applied to the field of genetic engineering. Cas9 targeted cleavage of DNA is achieved by the principle of complementary recognition of two small RNAs, crRNA (crispr RNA) and tracrRNA (trans-activating crRNA), to the target sequence. Two small RNAs have now been fused into one RNA strand, sgrna (single guide RNA) for short, capable of recognizing a specific gene sequence and guiding Cas9 protein cleavage. In eukaryotes, DNA is cleaved and end-linked by non-homologous recombination, resulting in frame shift mutations that ultimately result in functional gene knock-outs.

Compared with the 3 technologies, the CRISPR technology is simple to operate and high in screening efficiency, and can realize accurate targeted cutting. Therefore, the FGL2 gene knockout by the CRISPR technology can greatly improve the screening efficiency of FGL2 deleted cells and genetically engineered pigs. However, the key technical problem of the path is to design and prepare the sgRNA with accurate targeting, because the targeting accuracy of the gene is highly dependent on the sgRNA target sequence, and whether the sgRNA with accurate targeting can be successfully designed becomes the key technical problem of target gene knockout, and the invention aims to solve the technical problem so as to provide a solid foundation for knockout of the FGL2 gene.

Disclosure of Invention

The invention aims to provide a method for specifically knocking out pig FGL2 gene by CRISPR-Cas9 and sgRNA for specifically targeting FGL2 gene.

According to a first aspect of the invention, the invention provides a sgRNA for specifically targeting FGL2 gene in CRISPR-Cas9 specific knockout pig FGL2 gene, the sgRNA having the following features:

(1) the target sequence of the sgRNA on the FGL2 gene conforms to the sequence arrangement rule of 5 '-N (20) NGG-3', wherein N (20) represents 20 continuous bases, wherein each N represents A or T or C or G, and the target sequence conforming to the rule can be positioned on a sense strand or an antisense strand;

(2) the target sequence of the sgRNA on the FGL2 gene is positioned in the exon coding region of the FGL2 gene;

(3) the sgRNA is unique in the target sequence on FGL2 gene.

As a preferred scheme of the invention, the target sequence is SEQ ID NO: 1 to 78 in sequence list.

As a preferred scheme of the invention, the target sequence is SEQ ID NO: 3 or 25.

According to a second aspect of the invention, the invention provides a method for CRISPR-Cas9 specific knock-out of porcine FGL2 gene, comprising the steps of:

(1) adding a sequence for forming a sticky end to the 5' -end of the target sequence of the sgRNA in the first aspect, and synthesizing to obtain a forward oligonucleotide sequence; adding appropriate sequences for forming cohesive ends to both ends of a complementary sequence corresponding to the target sequence of the sgRNA described in the first aspect, and synthesizing to obtain an inverted oligonucleotide sequence; annealing and renaturing the synthesized forward oligonucleotide sequence and the reverse oligonucleotide sequence to form double-stranded oligonucleotide with a sticky end;

(2) connecting the double-stranded oligonucleotide into a linearized expression vector carrying a Cas9 gene to obtain an expression vector carrying sgRNA oligonucleotide containing a corresponding target sequence and a Cas9 gene, transforming competent bacteria, screening and identifying correct positive clone, shaking the positive clone, and extracting a plasmid;

(3) the expression vector, the packaging plasmid and the packaging cell line which carry the sgRNA oligonucleotide and the Cas9 gene are used for packaging the pseudotype lentivirus which simultaneously carries the sgRNA of the targeted FGL2 gene and the Cas 9;

(4) infecting a target cell with the pseudotyped lentivirus and further culturing; then collecting the infected target cell, amplifying a gene segment containing the target sequence by using the genome DNA of the infected target cell as a template, and determining the knockout condition of the FGL2 gene through denaturation, renaturation and enzyme digestion.

As a preferred scheme of the invention, the expression vector is SEQ ID NO: 79, or a vector comprising the sequence shown in seq id no.

As a preferred embodiment of the present invention, the above method comprises the steps of:

(1) adding a CACCG sequence to the 5' -end of the target sequence of the sgRNA in the first aspect, and synthesizing to obtain a forward oligonucleotide sequence; adding an AAAC sequence to the 5 '-end and adding a C to the 3' -end of a complementary sequence corresponding to the target sequence of the sgRNA in the first aspect, and synthesizing to obtain a reverse oligonucleotide sequence; annealing and renaturing the synthesized forward oligonucleotide sequence and the reverse oligonucleotide sequence to form double-stranded oligonucleotide with a sticky end;

(2) the double-stranded oligonucleotide is connected into a nucleotide sequence shown as SEQ ID NO: 79, obtaining a recombinant expression vector lentiCRISPR v2-FGL2 carrying sgRNA oligonucleotide by a linearized vector obtained by carrying out restriction enzyme digestion on an expression vector lentiCRISPR v2 with a sequence shown by 79 by BsmB I restriction enzyme, transforming competent bacteria, screening and identifying correct positive clone, shaking the positive clone, and extracting plasmid;

(3) the expression vector lentiCRISPR v2-FGL2, a packaging plasmid and a packaging cell line are used for packaging a pseudotype lentivirus which simultaneously carries sgRNA of a targeted FGL2 gene and Cas 9;

(4) infecting a target cell by using the CRISPR pseudotyped slow virus and further culturing; then collecting the infected target cell, amplifying a gene segment containing the target sequence by using the genome DNA of the infected target cell as a template, and determining the knockout condition of the FGL2 gene through denaturation, renaturation and enzyme digestion.

As a preferred embodiment of the present invention, the above-mentioned packaging plasmids are plasmid pLP1, plasmid pLP2 and plasmid pLP/VSVG; the packaging cell line is HEK293T cell.

In a preferred embodiment of the present invention, the target cell is a porcine PIEC cell.

In a preferred embodiment of the present invention, the gene fragment including the target sequence is amplified using the genomic DNA as a template, and the FGL2 gene knockout is determined by denaturation, renaturation and enzyme digestion, specifically:

(a) using the genomic DNA of the target cells infected with the virus as a template, amplifying an FGL2 gene fragment containing the target sequence of the sgRNA by using upstream and downstream primers of an FGL2 gene, and simultaneously amplifying the genomic DNA of wild-type cells not infected with the virus by using the same primer;

(b) purifying the amplified FGL2 gene fragment, mixing the FGL2 gene fragment from the target cell infected with virus and the FGL2 gene fragment from the wild cell in equal amount, heating for denaturation and renaturation to form hybrid DNA molecule;

(c) cutting the renatured hybrid DNA molecules by using Cruiser enzyme;

(d) detecting the enzyme digestion product by electrophoresis, and detecting the FGL2 gene knockout effect mediated by the target sequence.

According to the third aspect of the invention, the invention provides a recombinant expression vector lentiCRISPR v2-FGL2 used in a method for specifically knocking out porcine FGL2 gene by CRISPR-Cas9, wherein the sequence of the skeleton vector of the recombinant expression vector is shown as SEQ ID NO: 79; the carried target sequence is the target sequence of the sgRNA of the first aspect, preferably the sequence table SEQ ID NO: 3 or 25.

According to a fourth aspect of the invention, the invention provides the use of the sgRNA of the first aspect or the recombinant expression vector lentiCRISPR v2-FGL2 of the third aspect in a method of CRISPR-Cas9 specific knockout of the porcine FGL2 gene.

The sgRNA of the specific targeted FGL2 gene is successfully found by aiming at CRISPR-Cas9 specific knockout of the pig FGL2 gene, and the sgRNA is used in the method for CRISPR-Cas9 specific knockout of the pig FGL2 gene, so that the pig FGL2 gene can be quickly, accurately, efficiently and specifically knocked out, and the technical problems of long period and high cost in constructing the FGL2 gene knockout pig are effectively solved.

Drawings

Fig. 1 is a plasmid map of the vector plasmid lentiCRISPR v2 used in the examples of the present invention;

FIG. 2 is a plasmid map of the packaging plasmid pLP1 used in the examples of the present invention;

FIG. 3 is a plasmid map of the packaging plasmid pLP2 used in the examples of the present invention;

FIG. 4 is a plasmid map of the packaging plasmid pLP/VSVG used in the examples of the present invention;

FIG. 5 is a diagram showing the results of electrophoresis detection of the gene knockout effect of the enzyme digestion verification target sequence in the embodiment of the present invention, in which M represents DNA Marker, 1 and 2 respectively represent the targeted cleavage effect of the No. 3 and No. 25 target sequences in Table 1 on FGL2 gene, WT represents the detection result of the enzyme digestion of Cruiser, which is the PCR product of wild-type cells that have not undergone viral infection and Cas9 cleavage, and the arrow indicates small fragments obtained by the cleavage of Cruiser enzyme.

Detailed Description

The technical solution of the present invention is further explained with reference to the accompanying drawings and specific embodiments. The drawings and the detailed description are not intended to limit the scope of the invention. Unless otherwise specified, the technical means used in the examples are conventional means well known to those skilled in the art, and the raw materials used are commercially available products.

Test materials and reagents referred to in the following examples: the lentiCRISPR v2 plasmids were purchased from addge corporation, the packaging plasmids pLP1, pLP2 and pLP/VSVG were purchased from Invitrogen corporation, the packaging cell line HEK293T cells were purchased from american type culture collection bank (ATCC), the PIEC cells were purchased from chinese academy of sciences cell bank, the DMEM medium, Opti-MEM medium and fetal bovine serum FBS were purchased from Gibco corporation, and the Lipofectamine2000 was purchased from Invitrogen corporation.

The molecular biological experiments, which are not specifically described in the following examples, were performed by referring to the specific methods described in molecular cloning, a laboratory manual (third edition) j. sambrook, or according to the kit and product instructions.

The general technical scheme of the invention comprises the following five parts:

selection and design of sgRNA target sequence of Sus scrofa (pig) FGL2 gene

sgRNA target sequence selection of FGL2 gene:

an appropriate 20bp oligonucleotide sequence was found in the exon region of FGL2 gene as a target sequence.

sgRNA target sequence design of FGL2 gene:

and (3) adding linkers to the target sequence and the complementary sequence to form a forward oligonucleotide sequence and a reverse oligonucleotide sequence.

Second, construct CRISPR vector of FGL2 gene

1. The forward oligonucleotide sequence and the reverse oligonucleotide sequence are synthesized and renatured to form double-stranded DNA fragments (i.e., double-stranded target sequence oligonucleotides, which may also be referred to as double-stranded oligonucleotides) with sticky ends.

2. Constructing a CRISPR-sgRNA expression vector:

the double-stranded DNA fragment is constructed into a target vector (such as lentiCRISPR v2, and the plasmid map of the double-stranded DNA fragment is shown in figure 1) to form a lentivirus CRISPR vector such as lentiCRISPR v2-FGL 2.

Thirdly, obtaining the pseudotyped slow virus expressing FGL2sgRNA

And (3) producing the CRISPR pseudotyped lentivirus expressing FGL2sgRNA by using the packaging plasmid, the packaging cell line and the lentivirus CRISPR vector.

Fourthly, infecting target cells and detecting the knockout effect of FGL2 gene

1. Lentivirus infection of cells of interest:

a pseudotyped lentivirus such as lentiCRISPR v2-FGL2 is added to a cell culture medium of interest for infection and further culture.

2. Detecting the knockout effect of FGL2 gene:

collecting target cells, amplifying a gene segment containing a target sequence by using the genomic DNA as a template, and determining the knockout condition of the FGL2 gene through denaturation, renaturation and enzyme digestion.

Fifthly, selecting and identifying FGL2 gene knockout monoclone

1. For a target cell group with a definite knockout effect, a plurality of cell strains with single cell sources are separated through dilution and monoclonal culture.

2. A monoclonal FGL2 knockout was identified.

The technical solution and the advantageous effects thereof of the present invention will be described in detail by examples below.

Example one selection and design of sgRNA target sequence of Sus scrofa (pig) FGL2 Gene

The target sequence determines the targeting specificity of the sgRNA and the efficiency of inducing Cas9 to cleave the gene of interest. Therefore, efficient and specific target sequence selection and design are a prerequisite for constructing sgRNA expression vectors.

sgRNA target sequence selection of FGL2 Gene

For the FGL2 gene, the following principles should be followed in the selection of target sequences:

(1) searching for a target sequence conforming to the 5 '-N (20) NGG-3' rule in the exon coding region of the FGL2 gene, wherein N (20) represents 20 consecutive bases, wherein each N represents A or T or C or G, and the target sequence conforming to the rule can be positioned in a sense strand or an antisense strand;

(2) selecting exon coding region sequences, particularly selecting exon coding region sequences near the N end, wherein the functional knockout of the FGL2 gene can be caused by the cutting of the coding region sequences, and functional proteins cannot be formed by residual truncated sequences;

(3) if multiple spliceosomes are present, selection is made in the consensus exon coding region, and this condition can be met by selecting the exon coding region sequence near the N-terminus for the FGL2 gene;

(4) the homology of the target sequence in the pig genome is analyzed by using an online sequence analysis tool (http:// crispr. mit. edu /), the target sequence with significant homologous sequence is discarded, and the selected target sequence is further selected according to the score, and is unique on the FGL2 gene.

Based on the above principle, the target sequence set shown in Table 1 was selected.

TABLE 1 set of target sequences

Numbering	Sequence of
		1	TCCGCTGTCCTCGCGGCTTA
2	CCAAAAAGCCATAAGCCGCG
		3	GCTTTCTAGTCTCACCGGGC
4	CCTCGCGGCTTATGGCTTTT
		5	TGAAGCTGAAGCTGTCGAAC
6	CGTGGCCAACAATGAGACGG
		7	TGAAGCTGTCGAACTGGTGC
8	GGCTTATGGCTTTTTGGTCG
		9	GGTAGGCGGGTGTCCCTACC
10	TCTCACCGGGCAGGCGTCCT
		11	GGTCGTGGCCAACAATGAGA
12	GCCATAAGCCGCGAGGACAG
		13	AATTTCCTCCGTCTCATTGT
14	TCAAGGGGGGCAGGTTCACC
		15	AGCTCCCCAAGCAGTTTGGC
16	TCAATCCTGCCAAACTGCTT
		17	CAATCCTGCCAAACTGCTTG
18	GCTGAGCTCCGCTGTCCTCG
		19	CTCAATCCTGCCAAACTGCT
20	CAAGCAGTTTGGCAGGATTG
		21	CTCTGCTTTCTAGTCTCACC

22	GGAAATGCGAAGAGGTAGGC
		23	AGCAGCCAAGGACGCCTGCC
24	CTTCAGCTCCCCAAGCAGTT
		25	GCAGTTTGGCAGGATTGAGG
26	CCTCTGCTTTCTAGTCTCAC
		27	GGGGGGCAGGTTCACCTGGT
28	GCTGAAGAGTCAAGGGGGGC
		29	AAGCAGAGGGAAATGCGAAG
30	CCGGTGAGACTAGAAAGCAG
		31	GATTGAGGAGGTGTTCAAAG
32	CTTGGGGAGCTGAAGAGTCA
		33	GGGAAATGCGAAGAGGTAGG
34	CGGTGAGACTAGAAAGCAGA
		35	GGGGGCAGGTTCACCTGGTA
36	AGAGGGAAATGCGAAGAGGT
		37	TTGGGGAGCTGAAGAGTCAA
38	TGGGGAGCTGAAGAGTCAAG
		39	GGGGAGCTGAAGAGTCAAGG
40	GAAGAGATCGACGGGCTTCA
		41	GCTGACGACAACCGAGACCC
42	ATGCCAAGGAAGAGATCGAC
		43	GGAAGAGATCGACGGGCTTC
44	AAGCCCGTCGATCTCTTCCT
		45	CAGGAATGGACTGCTGTCAC
46	AATGCCAAGGAAGAGATCGA

47	TTGCCAAGACTGCAGACTGC
		48	CTCTGACCTGAAGAATGCCA
49	GGACTGCTGTCACCGGGCAC
		50	ACGACAACCGAGACCCAGGC
51	AGGAATGGACTGCTGTCACC
		52	AGTTAGAGAATTGGAGAACG
53	AGTCTTGGCAAGTCTTCTTC
		54	GACAGCAGTCCATTCCTGCC
55	GGCTGTTCACAATTTCCTTG
		56	CTTGGCATTCTTCAGGTCAG
57	TGGATGGCAAATGTTCATCG
		58	TGAGATCTACAGAGTTACAC
59	AACGTTTGCTGTCAATAGTT
		60	AGAACAAATACAGTCACGTC
61	AACTATTGACAGCAAACGTT
		62	TGCTCTGAATACTACACAAT
63	AAATTACGTTGATAACAAGG
		64	TTTGCTGTCAATAGTTTGGA
65	GACTGTATTTGTTCTTGACT
		66	TTATATATAAGATGTTGAAC
67	TGACTGTATTTGTTCTTGAC
		68	GTGCTGCAGGCACGTCTTGA
69	TTTGTAGTCTCGCCATGTTC
		70	CGAGACTACAAAGTTGGCTT
71	ACATGGCGAGACTACAAAGT

72	TCGCCATGTTCTGGTGAAGT
		73	AAGCTACTGTTTTTGGGATC
74	TCATCTTCTGACTAAGAGTA
		75	GCACCAACTTCACCAGAACA
76	TACTGTGACATGGAGACCAT
		77	CCTCAGAAGAGAATTTTGGT
78	GATTCTAAGAATAGATCTTG

sgRNA target sequence design of FGL2 gene:

(1) a lentiCRISPR v2 plasmid is used as an expression vector, and a CACCG sequence is added to the 5' -end of the N (20) target sequence according to the characteristics of the lentiCRISPR v2 plasmid to form a forward oligonucleotide sequence:

5’-CACCGNNNNNNNNNNNNNNNNNNNN-3’；

(2) adding sequences to both ends of the reverse complement of the N (20) target sequence to form a reverse oligonucleotide sequence:

5’-AAACNNNNNNNNNNNNNNNNNNNNC-3’；

the forward oligonucleotide sequence and the reverse oligonucleotide sequence may be complementary to form a double-stranded DNA fragment with sticky ends:

5’-CACCGNNNNNNNNNNNNNNNNNNNN-3’

3’-CNNNNNNNNNNNNNNNNNNNNCAAA-5’。

example two construction of sgRNA expression vector for FGL2 Gene

1. Synthesis of DNA insert

(1) Synthesis of the designed Forward and reverse oligonucleotide sequences

Oligonucleotide sequences can be specifically synthesized by commercial companies (e.g., Invitrogen corporation) based on the sequences provided. In this example and the following examples, the effect of knocking out the FGL2 gene by the target sequences shown in SEQ ID Nos. 3 and 25 listed in Table 1 was examined.

The forward and reverse oligonucleotide sequences corresponding to target sequence No. 3 are as follows:

GACCGGCTTTCTAGTCTCACCGGGC(SEQ ID NO：80)；

AAACGCCCGGTGAGACTAGAAAGCC(SEQ ID NO：81)。

the forward and reverse oligonucleotide sequences corresponding to target sequence No. 25 are as follows:

CACCGGCAGTTTGGCAGGATTGAGG(SEQ ID NO：82)；

AAACCCTCAATCCTGCCAAACTGCC(SEQ ID NO：83)。

the corresponding forward and reverse oligonucleotide sequences are annealed and renatured to form double-stranded DNA fragments having sticky ends.

The reaction system (20. mu.L) is shown below:

forward oligonucleotide (10. mu.M): 1 μ L

Reverse oligonucleotide (10 μ M): 1 μ L

10×PCR buffer：2μL

ddH₂O：16μL

The reaction system was placed in a PCR apparatus and the reaction was carried out according to the following procedure.

Reaction procedure:

95℃,5min；

80℃,5min；

70℃,5min；

60℃,5min；

50℃,5min；

naturally cooling to room temperature.

2. Construction of sgRNA expression vector

(1) The BsmB I restriction enzyme is used for cutting the objective vector lentiCRISPR v2 plasmid (the sequence of which is shown as SEQ ID NO: 79 in the sequence table).

The preparation method comprises the following steps:

the lentiscrispr v2 plasmid: 1 μ g

10 Xenzyme digestion buffer: 2 μ L

BsmB I restriction enzyme: 2 μ L

Supplemental ddH₂O to a total volume of 20. mu.L

The enzyme digestion reaction system is placed at 37 ℃ for reaction for 4 h.

(2) Electrophoretic separation and purification of vector fragments

After completion of the digestion, the digestion mixture was separated by agarose gel electrophoresis, and the vector fragment (about 12kb) was selected for cleavage and recovered by a DNA gel recovery column.

(3) Connecting the synthesized double-stranded DNA fragment with the vector main fragment and transforming the double-stranded DNA fragment into escherichia coli

Performing ligation reaction on the double-stranded DNA fragment obtained by renaturation and the recovered vector fragment, and preparing according to the following reaction system:

the LentiCRISPR v2 vector fragment: 100ng

Double-stranded DNA fragment: 200ng

T4 ligase: 1 μ L

T4 ligation reaction buffer: 1 μ L

Supplemental ddH₂O to a total volume of 10. mu.L

The ligation mixture was left to react for 2h at 25 ℃.

After the reaction was complete, the ligation mixture was transformed into E.coli strain DH5 α: add 100. mu.LE.coli DH 5. alpha. competent cells to the ligation mixture and incubate for 30min on ice; putting the mixture into a water bath at 42 ℃, performing heat shock for 90s, and then putting the mixture on ice for cooling; adding 100 μ L LB medium into the mixture, and shake culturing at 37 deg.C for 20 min; the mixture was spread on Amp LB plates and incubated at 37 ℃ for 14 h.

(4) Identification of the correct transformed clones

And selecting a plurality of colonies from the Amp LB plate for amplification culture, and extracting plasmids for enzyme digestion identification. Clones that are likely to be correct are selected for sequencing, and the correct insertion sequence is verified. The correct lentiCRISPR v2-FGL2 vector clone was used for seed preservation.

Example three obtaining a pseudotyped Lentivirus expressing FGL2sgRNA

1. Material preparation

The packaging plasmids pLP1, pLP2, and pLP/VSVG (purchased from Invitrogen, maps shown in FIG. 2, FIG. 3, and FIG. 4, respectively) were amplified and extracted; amplifying and extracting a vector plasmid lentiCRISPR v2-FGL 2; culturing packaging cell line HEK293T cells (purchased from ATCC); DMEM medium, Opti-MEM medium and fetal bovine serum FBS (purchased from Gibco); lipofectamine2000 (ex Invitrogen); HEK293T cells cultured in 5% CO₂The culture environment of (1) is 37 ℃, and the culture medium is a DMEM medium containing 10% FBS.

2. Transfection and viral packaging

The first day: the packaging cell line HEK293T was passaged to 10cm dish, approximately 30% confluence;

the next day: transfection was performed at 80% confluence of HEK293T according to the following recipe:

formulation mixture 1, comprising:

lentiCRISPR v2-FGL2：6μg

pLP1：6μg

pLP2：6μg

pLP/VSVG：3μg

Opti-MEM：500μL。

formulation mixture 2, comprising:

Lipofectamine 2000：30μL

Opti-MEM：500μL。

after standing for 5min,mix 1 andmix 2 were mixed well to form a transfection mixture, and left to stand for 20 min.

The HEK293T medium was changed to serum-free DMEM medium, the transfection mixture was added, and the medium was changed to 20% FBS DMEM medium after 8 hours at 37 ℃ to continue the culture.

3. Virus collection and preservation

And on the third day: after transfection for 48h, HEK293T medium supernatant containing virus was collected, filtered through 0.45 μm filter tip, split charged, and stored at-80 ℃.

Example four infection of cells of interest and detection of the knockout Effect of the target sequence

1. Material preparation

Culturing porcine hip arterial endothelial cells PIEC (purchased from cell bank of Chinese academy of sciences) of a target cell line; DMEM medium and fetal bovine serum FBS (purchased from Gibco); lentiCRISPR v2-FGL2 pseudotyped lentiviruses of different target sequences (seq id No. 3 and seq id No. 25); PIEC cells cultured in 5% CO₂The culture environment of (1) is 37 ℃, and the culture medium is a DMEM medium containing 10% FBS.

2. Lentiviral infection of target cells

The first day: cells of interest were passaged to 6-well plates at approximately 20% confluency density. One 6 well per virus was required, while one 6 well efficiency control was required.

The next day: when the fusion density of the target cells is about 40%, 1mL lentiCRISPR v2-FGL2 pseudotype lentivirus supernatant and 1mL DMEM medium are added. The efficiency control did not require addition of lentivirus.

And on the third day: after 24h of infection, the virus-containing medium was removed, replaced with normal medium, puromycin was added to a final concentration of 2. mu.g/mL, and puromycin was added as a control to the efficiency control sample without virus infection for 48 h.

3. Cell infection efficiency detection and culture

The fifth day: uninfected efficiency control cells should all apoptosis (> 95%) under the action of puromycin. The infection efficiency of the cells is judged according to the apoptosis of infected lentivirus cells, and can generally reach more than 90 percent (the apoptosis rate is less than 10 percent). If necessary, the virus supernatant may be concentrated or diluted in a gradient and then infected to achieve a suitable infection efficiency.

After puromycin screening, uninfected cells were apoptotic. The cells of interest were re-passaged and replaced with normal medium for 48 h.

4. Detection of FGL2 gene knockout effect

(1) Designing an upstream primer and a downstream primer to amplify the FGL2 gene fragment, wherein the sequences of the upstream primer and the downstream primer are shown as follows:

GCTGGGGTGAGCGCCACCGC(SEQ ID NO：84)；

CAGGCGACCCTGAAGCCCGT(SEQ ID NO：85)。

CCAACAATGAGACGGAGGAA(SEQ ID NO：86)；

GCGATGAACATTTGCCATCC(SEQ ID NO：87)。

primers SEQ ID NO: 84-85 for detecting sequence No. 3, primer SEQ ID NO: 86-87 were used to detect sequence number 25.

(2) A part of the cells of interest was collected, and genomic DNA was extracted using a promega genomic DNA kit. Meanwhile, the genome DNA of the wild type target cell is extracted.

(3) The FGL2 gene fragment containing the target sequence (including the infected mutant sample and the wild-type sample) was amplified using the genomic DNA as a template.

The amplification reaction (20. mu.L) was as follows:

upstream primer (10 μ M): 1 μ L

Downstream primer (10 μ M): 1 μ L

2×PCR Mix：10μL

Genomic DNA: 100ng

The above reaction system was prepared, placed in a PCR apparatus, and reacted according to the following procedure.

Reaction procedure:

95℃,3min

95℃,30s

58℃,20s

72℃,20s

72℃,3min；

wherein the second through fourth steps are repeated for 35 cycles.

(4) Electrophoresis detection of PCR product and recovery and purification

(5) And (3) respectively heating and denaturing the purified DNA fragments to form hybrid DNA molecules (including mutant samples and wild samples).

The reaction system is as follows:

genomic PCR fragment: 200ng

5 × reaction buffer: 2 μ L

Reaction system totally 9. mu.L

The above reaction system was prepared, placed in a PCR apparatus, and reacted according to the following procedure.

Reaction procedure:

95℃,5min；

80℃,5min；

70℃,5min；

60℃,5min；

50℃,5min；

naturally cooling to room temperature.

(6) Cleavage of renatured hybrid DNA (including mutant and wild type samples) with Cruiser enzyme

mu.L of Cruiser enzyme was added to the denatured, renatured reaction mixture and incubated at 45 ℃ for 20 min.

(7) Detecting the enzyme digestion product by electrophoresis, and detecting the FGL2 gene knockout effect mediated by the target sequence.

The digested DNA fragment was analyzed by electrophoresis on a 2% agarose gel at 100V for 25 min. Determining the cutting condition of the target segment and judging the gene knockout effect of the target sequence.

The recognition of the cleavage of the mutated DNA is based on the following principle: infected cells express sgRNA and Cas 9. If targeted cleavage of genomic DNA by sgRNA mediated Cas9 protein, a mutation (wild type to mutant) is introduced near the cleavage site after repair. Because the wild type and the mutant type sequences are not matched at the position, a hybrid molecule formed by the wild type DNA and the mutant type DNA amplified by taking the wild type and the mutant type sequences as templates through renaturation can generate a local loop structure. The latter can be recognized and cleaved by the Cruiser enzyme, resulting in the cleavage of the hybrid DNA molecule into small fragments.

As a result, as shown in FIG. 5, no small fragments were detected from the PCR product of the virus-uninfected wild-type cells; and thesequence 3 and the sequence 25 can effectively target FGL2 gene to generate cleavage, so that the existence of a small fragment is detected, and thesequence 3 and the sequence 25 can be used as target sequences for CRISPR-Cas9 specific knockout of pig FGL2 gene.

EXAMPLE V selection and characterization of FGL2 Gene knockout monoclonals

1. Selection of a monoclonal (target sequence based on SEQ ID No. 3 and SEQ ID No. 25)

(1) The partially infected target cell population was passaged, and 100 single cells were transferred to 10cm dish culture.

(2) After about 10 days of culture, a significant number of the single clones grew to macroscopic levels.

(3) Individual clones were scraped with a pipette tip and cells were transferred to 24-well plates for culture, one clone per well.

(4) After about one week of culture, some clones grew to a sufficient number and were ready for further characterization.

2. Identification of a monoclonal FGL2 knockout

(1) And collecting the monoclonal and wild cells to be detected, and respectively extracting the genomic DNA.

(2) FGL2 gene fragments of monoclonal and wild type cells were amplified separately as described above, the amplified gene fragments containing the sgRNA target sequence.

(3) Mixing the same amount of monoclonal PCR fragment with wild PCR fragment, heating to denature and renature to form hybrid DNA molecule.

(4) The annealed hybrid DNA was cleaved with Cruiser enzyme and incubated at 45 ℃ for 20 min.

(5) Detecting the enzyme digestion product by electrophoresis, and determining whether effective mutation occurs in the monoclonal according to whether the cutting fragment exists.

The result shows that 20 monoclonals randomly selected from 100 single cells infect target cells based on the lentiCRISPR v2-FGL2 pseudotype lentivirus of the target sequence shown in thesequence 3 and are detected by the enzyme digestion electrophoresis of the Cruiser enzyme, wherein 19 monoclonals can detect the small cut fragment, which indicates that gene knockout occurs, and the gene knockout efficiency can reach more than 95%, thus indicating that the target sequence shown in thesequence 3 has a very high effect of targeted knockout of the FGL2 gene. 20 monoclones randomly selected from 100 single cells infect a target cell based on the lentiCRISPR v2-FGL2 pseudotype lentivirus of a target sequence shown in a sequence 25, and are detected by Cruiser enzyme digestion electrophoresis, wherein 18 monoclones can detect a small cut fragment, which indicates that gene knockout occurs, and the gene knockout efficiency can reach more than 90 percent, thus indicating that the target sequence shown in the sequence 25 has a very high effect of targeted knockout of an FGL2 gene.

The foregoing is a more detailed description of the present invention that is presented in conjunction with specific embodiments, and the practice of the invention is not to be considered limited to those descriptions. It will be apparent to those skilled in the art that a number of simple derivations or substitutions can be made without departing from the inventive concept.

Claims (8)

Translated fromChinese

1.在CRISPR-Cas9特异性敲除猪FGL2基因中用于特异性靶向FGL2基因的sgRNA，其特征在于：1. A sgRNA for specifically targeting FGL2 gene in CRISPR-Cas9 specific knockout of pig FGL2 gene, characterized in that:(1)所述sgRNA在FGL2基因上的靶序列符合5’-N(20)NGG-3’的序列排列规则，其中N(20)表示20个连续的碱基，其中每个N表示A或T或C或G，符合规则的靶序列可以位于正义链或反义链；(1) The target sequence of the sgRNA on the FGL2 gene conforms to the sequence arrangement rule of 5'-N(20)NGG-3', wherein N(20) represents 20 consecutive bases, wherein each N represents A or T or C or G, the target sequence that conforms to the rules can be located in the sense strand or antisense strand;(2)所述sgRNA在FGL2基因上的靶序列位于FGL2基因的外显子编码区；(2) the target sequence of the sgRNA on the FGL2 gene is located in the exon coding region of the FGL2 gene;(3)所述sgRNA在FGL2基因上的靶序列是唯一的；(3) The target sequence of the sgRNA on the FGL2 gene is unique;所述靶序列为序列表中SEQ ID NO：3或25所示的序列。The target sequence is the sequence shown in SEQ ID NO: 3 or 25 in the sequence listing.2.sgRNA或其在FGL2基因上的靶序列在制备运用CRISPR-Cas9特异性敲除猪FGL2基因的试剂盒中的用途，其特征在于，所述用途包括如下步骤：2. The purposes of sgRNA or its target sequence on the FGL2 gene in the preparation of a kit for using CRISPR-Cas9 to specifically knock out the pig FGL2 gene, wherein the purposes comprise the steps:(1)在权利要求1所述的sgRNA的靶序列的5’-端加上用于形成粘性末端的序列，合成得到正向寡核苷酸序列；在权利要求1所述的sgRNA的靶序列对应的互补序列的两端加上合适的用于形成粘性末端的序列，合成得到反向寡核苷酸序列；将合成的所述正向寡核苷酸序列与反向寡核苷酸序列退火、复性，形成具有粘性末端的双链寡聚核苷酸；(1) adding a sequence for forming a sticky end to the 5'-end of the target sequence of the sgRNA according to claim 1, and synthesizing a forward oligonucleotide sequence; the target sequence of the sgRNA according to claim 1 The two ends of the corresponding complementary sequences are added with suitable sequences for forming sticky ends, and the reverse oligonucleotide sequence is obtained by synthesis; the synthesized forward oligonucleotide sequence and the reverse oligonucleotide sequence are annealed , renatured to form double-stranded oligonucleotides with sticky ends;(2)将所述双链寡聚核苷酸连入线性化的携带Cas9基因的表达载体，得到携带含相应靶序列的sgRNA寡聚核苷酸和Cas9基因的表达载体，转化感受态细菌，筛选鉴定出正确的阳性克隆，并对所述阳性克隆摇菌、提取质粒；(2) connecting the double-stranded oligonucleotide into a linearized expression vector carrying the Cas9 gene, obtaining an expression vector carrying the sgRNA oligonucleotide containing the corresponding target sequence and the Cas9 gene, and transforming competent bacteria, Screen and identify the correct positive clone, shake the bacteria and extract the plasmid for the positive clone;(3)用所述携带有sgRNA寡聚核苷酸和Cas9基因的表达载体、包装质粒和包装细胞系包装出同时携带靶向FGL2基因的sgRNA和Cas9的假型慢病毒；(3) packaging a pseudotyped lentivirus carrying sgRNA targeting FGL2 gene and Cas9 with the expression vector, packaging plasmid and packaging cell line carrying the sgRNA oligonucleotide and Cas9 gene;(4)使用所述假型慢病毒感染目的细胞，并进一步培养；然后收集被感染的目的细胞，以其基因组DNA为模板扩增包含所述靶序列的基因片段，经过变性、复性及酶切，确定FGL2基因的敲除情况。(4) using the pseudotyped lentivirus to infect the target cells, and further culture; then collect the infected target cells, amplify the gene fragments containing the target sequence with its genomic DNA as a template, undergo denaturation, renaturation and enzymatic Cut to determine the knockout of FGL2 gene.3.根据权利要求2所述的用途，其特征在于，所述表达载体为序列表中SEQ ID NO：79所示序列的载体。3. The use according to claim 2, wherein the expression vector is a vector of the sequence shown in SEQ ID NO: 79 in the sequence listing.4.根据权利要求2或3所述的用途，其特征在于，所述用途包括如下步骤：4. The use according to claim 2 or 3, characterized in that, the use comprises the steps of:(1)在权利要求1所述的sgRNA的靶序列的5’-端加上CACCG序列，合成得到正向寡核苷酸序列；在权利要求1所述的sgRNA的靶序列对应的互补序列的5’-端加上AAAC序列、3’-端加上C，合成得到反向寡核苷酸序列；将合成的所述正向寡核苷酸序列与反向寡核苷酸序列退火、复性，形成具有粘性末端的双链寡聚核苷酸；(1) adding a CACCG sequence to the 5'-end of the target sequence of the sgRNA according to claim 1, and synthesizing the forward oligonucleotide sequence; Add the AAAC sequence to the 5'-end and add C to the 3'-end to synthesize the reverse oligonucleotide sequence; anneal the synthesized forward oligonucleotide sequence to the reverse oligonucleotide sequence, repeat sex, forming double-stranded oligonucleotides with sticky ends;(2)将所述双链寡聚核苷酸连入如序列表中SEQ ID NO：79所示序列的表达载体lentiCRISPR v2经BsmB I限制性内切酶酶切得到的线性化载体，得到携带sgRNA寡聚核苷酸的重组表达载体lentiCRISPR v2-FGL2，转化感受态细菌，筛选鉴定出正确的阳性克隆，并对所述阳性克隆摇菌、提取质粒；(2) linking the double-stranded oligonucleotide into the expression vector lentiCRISPR v2 with the sequence shown in SEQ ID NO: 79 in the sequence listing, and the linearized vector obtained by BsmBI restriction endonuclease cleavage to obtain a linear vector carrying The recombinant expression vector lentiCRISPR v2-FGL2 of sgRNA oligonucleotides is used to transform competent bacteria, screen and identify correct positive clones, shake the bacteria and extract plasmids for the positive clones;(3)用所述表达载体lentiCRISPR v2-FGL2、包装质粒和包装细胞系包装出同时携带靶向FGL2基因的sgRNA和Cas9的假型慢病毒；(3) using the expression vector lentiCRISPR v2-FGL2, packaging plasmid and packaging cell line to package a pseudotyped lentivirus carrying both sgRNA and Cas9 targeting the FGL2 gene;(4)使用所述假型慢病毒感染目的细胞，并进一步培养；然后收集被感染的目的细胞，以其基因组DNA为模板扩增包含所述靶序列的基因片段，经过变性、复性及酶切，确定FGL2基因的敲除情况。(4) using the pseudotyped lentivirus to infect the target cells, and further culture; then collect the infected target cells, amplify the gene fragments containing the target sequence with its genomic DNA as a template, undergo denaturation, renaturation and enzymatic Cut to determine the knockout of FGL2 gene.5.根据权利要求4所述的用途，其特征在于，所述包装质粒为质粒pLP1、质粒pLP2和质粒pLP/VSVG；所述包装细胞系为HEK293T细胞。5. The use according to claim 4, wherein the packaging plasmids are plasmid pLP1, plasmid pLP2 and plasmid pLP/VSVG; and the packaging cell line is HEK293T cell.6.根据权利要求4所述的用途，其特征在于，所述目的细胞为猪PIEC细胞；6. purposes according to claim 4, is characterized in that, described target cell is pig PIEC cell;所述以其基因组DNA为模板扩增包含所述靶序列的基因片段，经过变性、复性及酶切，确定FGL2基因的敲除情况，具体为：Described using its genomic DNA as a template to amplify the gene fragment comprising the target sequence, through denaturation, renaturation and enzyme digestion, to determine the knockout situation of the FGL2 gene, specifically:(a)以感染病毒的目的细胞的基因组DNA为模板，用FGL2基因的上下游引物扩增包含所述sgRNA的靶序列的FGL2基因片段，同时用相同引物扩增未感染病毒的野生型细胞的基因组DNA；(a) Using the genomic DNA of the target cell infected with the virus as a template, the upstream and downstream primers of the FGL2 gene are used to amplify the FGL2 gene fragment comprising the target sequence of the sgRNA, and the same primer is used to amplify the wild-type cell that is not infected with the virus. genomic DNA;(b)纯化上述扩增到的FGL2基因片段，然后将来自感染病毒的目的细胞的FGL2基因片段与来自野生型细胞的FGL2基因片段等量混合、加热变性、复性，形成杂交DNA分子；(b) purifying the above-mentioned amplified FGL2 gene fragment, then mixing the FGL2 gene fragment from the virus-infected target cell with the FGL2 gene fragment from the wild-type cell in equal amounts, heat denaturation, and renaturation to form a hybrid DNA molecule;(c)用Cruiser酶切割复性后的杂交DNA分子；(c) cleaving the renatured hybrid DNA molecule with Cruiser enzyme;(d)电泳检测酶切产物，检测靶序列介导的FGL2基因敲除效果。(d) Electrophoresis was used to detect the digestion products, and the effect of FGL2 gene knockout mediated by the target sequence was detected.7.在CRISPR-Cas9特异性敲除猪FGL2基因的方法中用到的重组表达载体lentiCRISPRv2-FGL2，其特征在于，所述重组表达载体的骨架载体的序列如序列表中SEQ ID NO：79所示；所携带的靶序列选自序列表中SEQ ID NO：3或25所示的靶序列。7. The recombinant expression vector lentiCRISPRv2-FGL2 used in the method for CRISPR-Cas9 specific knockout of pig FGL2 gene, is characterized in that, the sequence of the backbone vector of described recombinant expression vector is as shown in SEQ ID NO:79 in the sequence listing. The target sequence carried is selected from the target sequence shown in SEQ ID NO: 3 or 25 in the sequence listing.8.如权利要求7所述的重组表达载体lentiCRISPR v2-FGL2在制备运用CRISPR-Cas9特异性敲除猪FGL2基因的试剂盒中的用途。8. Use of the recombinant expression vector lentiCRISPR v2-FGL2 as claimed in claim 7 in the preparation of a kit for specifically knocking out pig FGL2 gene using CRISPR-Cas9.

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