Fi el d of the Inerenti on 13 4 ~ 4 9 1 This invention relates to the preparation of human IGF
( i nsul i n-1 i ke gro°wth factor) , i n vari ous forms, vi a recombi nant DNA
technology. Notably, the present invention provides for thp preparation of human IGF as a mature protein product of expression, processing, and secretion in a recombinant DIVA modified host organism. This invention thus provides for the production, isolation, and use of human IGF, in its various forms, as well as to the associated recombinant DNA technology by which it is prepared.
In addition, the present invention relates to the similar preparation of a related protein, human EGF (Epidermal Growth Factor).
The present invention arises in part from the discovery of a novel system by :vhich human IGF can be prepared by a recombinant host organism in the form of a discrete, mature protein. This is accomplished according to one aspect of the present invention by an expression system v hick permits the expression of the amino acid 2p sequence of human IGF fused with at least a portion of the yeast alpha factor signal sequence, follo~~ed by processing of said signal sequence, and secretion of mature human IGF protein into the medium supporting the most organism. Thus, this novel aspect of the present invention, it is believed for the first time, permits the .- 25 preparation, isolation, and utilization of human IGF as a discrete, mature protein. The present invention, in its broad compass, however, covers the preparation of the amino acid sequence of human IGF in other recombinant systems including bacteria and cell culture and includes, therefore, the expression of i~uman IGF DIVA sequences 30 providing not only mature human IGF but also fusion product derivatives containing the amino acid sequence of IGF as the essential component. All such products have been found to be biologically active, hence useful as intended.
The publications and other materials hereof used to illu~~ninate the bacxground of 4h~ invention, and in particular case , to provide additional details concerning its practice for convenience, are alphabetically and numerically referenced in the following text and respectively grouped in the appended bibliography.
Background of the Invention A. Human IGF (Insulin-like Growth Factor) Human IGF has been the subject of a fair amount of intensive study by past workers. A body of literature has been developed related to various aspects of this protein or series or proteins (see references A through L).
Insul i n-1 i ke gro.~th factors I and I I have been i sol ated f roru human serum (A) . The desi gnati on "i nsul i n-1 i ke gro~rth factor" or IGF was chosen to express the insulin-like effects and the insulin-like structure of these polypeptides which act as mitogens on a number of cells. The complete a~aino acid sequences of IGF-I
and IGF-II have been determined (D, E). They are both single-chain polypeptides ~rith three disulphide bridges and a sequence identity of 49 and ~7 percent respectively, to human insulin A and B chains.
The connecting peptide or C region is considerably shorter than the one of proinsulin and does not show any significant homology to it.-(For a summary of earlier studies on the biological ~rforts of IGF, see Reference F).
IFG-I and IGF-II are gro~:~rth promoting polypeptides occuring in human serum and human cerebral spinal fluid. Their structure is homologous to proinsulin. IGF-I seems to be produced by the liver along with a specific IGF-binding protein both of which are under ~~ 4491 control of growth hormone. Thus, human IGF is considered to be an active groeuth promoting molecule that mediates the effect of human growth hormone.
It was percei ved that the appl ication of recombi nant D~~A and associated technologies ~vouid be a most effective way of providing the requisito large quantities of high quality human IGF for applied use to human beings as a gro4rth factor. The goal was to produce human IGF either as biologically active fusion protein, or more importantly, as a mature protein, as products of recombinant DNA
technology from a host organism. Such materials would exhibit bioactivity admitting of their use clinically in the treatment of various growth affected conditions.
B. Recombinant DNA Technology Recombinant DNA technology ~~as reacoed the age of some sophistication. irlolecular biologists are able to recombine various DiJA sequences Sri th some faci 1 i ty, crew ti ng new D~JA enti ti es capabl a of producing copious amounts of exogenous protein product in transformed microbes and cell cultures. The general means and methods are in hand for the in vitro ligation of various blunt ended or "sticky" ended fragments of DNA, producing potent expression vehicles useful in transforming particular organisms, thus directing their efficient synti~esis of desired exogenous product. However, on an individual product basis, the pathway remains somewhat tortuous and the science has not advanced to a stage where regular predictions of success can be made. Indeed, those who portend successful resul is wi tnout the underlyi ng experi nen tal basi s, do so with considerable risk of inoperability.
DIVA recombination of the essential eiements, i.e., an origin of replication, one or more phenotypic selection characteristics, an expression promoter, heterologous gene insert and remainder vector, generally is performed outside the host cell. The resulting 13 4149' recombinant replicable expression vehicle, or plasmid, is introduced i n to cel 1 s by transfor-oati on and 1 arge quanti ti es of the recombi pant vehicla obtained by growing the transformant. ~Jhere the gene is properly inserted with rLference to portions which govern the transcription and translation of the encoded DNA message, the resulting expression vehicle is useful to actually produce the polypeptide sequence for ;~hich the inserted gene codes, a process referred to as expression. The resulting product may be obtained by lysing, if necessary, the host cell, in microbial systems, and recovering the product by appropriate purification from other proteins.
In practice, the use of recombinant DNA technology can express entirely heterologous polypeptides--so-called direct expression--or alternatively may express a heterologous polypeptide fuszd to a portian of the amino acid sequence of a homologous polypeptide. In the latter cases, the intended bioactive product is sometimes rendered biofnactive L,rithin the fused, homologous/heterologous polypeptide until it is cleaved in an extracellular environment.
See references (~1) and (.J).
Similarly, the art of czll or tissue cultures for studying genetics and cell physiology is well established. Means and methods are i n hand for rnai ntai ni ng permanent cel 1 1 i nes, prepared by successive serial transfers from isolate normal cells. For use in research, suci~ cell lines are maintained on a solid support in liquid medium, or by gro°,~th in suspension containing support nutriments. Scale-zrp for large preparations seems to pose only mechanical problems. For further background, attention is directed to references (0) and (P).
Li n2:V1 Se, prot2i n bi oche;ii stry i s 3 useful , i ndeed necessary, adjunct in biotechnology. Cells producing the desired protein also produce hundreds of other proteins, endogenous products of the cell's metabolism. These contaminating proteins, as ,yell as ot~~er G
compounds, if not removed from the desired protein, could prove toxic if administered to an animal or human in the course of therapeutic treatment ;,pith desired protein. Hence, the techniques of pratein biochemistry come to bear, allowing the design of separation procedures suitably for the particular system under consideration and providing a homogeneous product safe for intended use. Protein biochemistry also proves the identity of the desired product, characterizing it and ensuring that the cells have produced it faithfully with no alterations or mutations. This branch of science is also involved in the design of bioassays, stability studies and other procedures necessary to apply before successful clinical studies and marketing can take place.
Summary of the Invention The present i nvention i s bds~d upon rite di ~covery char:
recombinant DMA technology can be used successfully to produce human IGF and related protein, human EGF, preferably in direct form and in amounts sufficient to initiate and conduct animal and clinical testing as prerequisites to market approval. The products human IGF
and EGF are suitable for use in all of t;t~ir forms as produced accordi ng to the present i nvention, viz. i n tile prophyl actic or therapeutic treatment of human beings for various growth associated conditions or dis~as~s. Accordingly, the present invention, in one important aspect, is directed to methods of treating growth conditions in human subjects using human IGF or human EGF, and suitable pha nnaceutical compositions thereof, prepared in accordance wit'rt the methods and means of the present invention. ' -The present invention further comprises essentially pure, mature human IGF, as a product of expression, processing, and secretion in a recombinant host organism. Such human IGF is free from associ ati on ~~i th .J-term nus ami no aci d sequence deri vabl a f rocs the expression systems that can be employed to prepare the material.
Thus, ;rrhile the present invention is directed to the preparation of polypeptides comprising the amino acid sequence of IGF, a notable aspect of the present invention involves the production of the mature human IGF directly into the medium of the recombinant host organism employed. The present invention is also directed to replicable DNA expression vehicles harboring gene sequences encoding human IGF and hu;nan EGF i n expressi bl a forTn, to microorgani sm strains or cell cultures transformed with such vehicles and to microbial or cell cultures o. sucP~ transformants capable of producing amino acid sequences of human IGF and human EGF. In still further aspects, the present invention is directed to various processes useful for preparing said genes sequences, DNA expression vehicles, microorganisms and cell cultures and specific embodiments thereof. Still further, this invention is directed to the preparation of fermentation cultures of said microorganisms and cell ~5 cultures.
Bri ef Dascri pti on of toe Dra;,ri ngs Figure 1 represents the chemically synthesized DNA strands used in the construction of expression vectors for human IGF.
Figure 2 shows the completed double stranded DfdA of Figure 1.
Figure 3 show the fragments of DNA of Figura 2 after restriction by ECoRI and PstI and Sam HI. .
Figure 4 depicts the ligation of parts 1 and 2 of Figure 3 in to PBit322.
f=igure 5 show parts 3 and 4 of IGF-I right half.
Figure 6 depicts the ligation of parts 3 and 4 of Figure 5 into the vector of Figure ~.
Figure 7 shoes a sequence of DNA and deduced fusion protein containing IGF-I.
Figure d shows a sequence of D~IA and deduced snort fusion protein containing IGF-I.
Figure 9 depicts a plasmid used in the present construction.
rigure 10 shows the DNA and protein sequence of IGF-I fused with alpha factor pre-pro sequence.
f=igure 11 is a vector containing alpha factor promotor and pre-pro sequence fused to IGF-I.
Figure 12 sho:as the yeast invertase signal fused to IGF-I.
Figure 13 shows the parental plasmid containing the yeast PGK
promotor.
Figure 1~ depicts a yeast expression vector containing PGK
promotor, invertase signal and human IGF-I gene.
Figurz 15 is the synthetic rgi~A used to construct the coding sequence of mature human EGF.
Figure 16 depicts the yeast alaoa factor "pre-pro" sequence fused to the human EGF coding sequence.
Figure 17 depicts the yeast invertase signal sequence fused to the human EGF coding sequence.
Figure 18 shoes the coding sequence for human IGF-II.
Detailed Description A. Definitions As used herein, "human IGF" and "human EGF" denotes human i nsul i n-1 i ke growth factor and human epi dermal gro' th factor, produced by microbial or cell cultures systems and bioactive forms comprising the amino acid sequence corresponding to~i~uman IGF and human cGF othera~ise native to human tissue. The human IGF and EGF
proteins produced herein have been defined by means of DNA, gene, and deductive amino acid sequencing. It will be understood that inasmuch as natural allelic variations exist and occur from individual to individual, as demonstrated by (an) amino acid differences) in the overall sequence or by deletions, substitutions, insertions, inversions, or additions of one or more amino acids of said sequences, the present invention is intended to embrace of all such allelic variations of ~he t~.ro molecules involved. In addition, the location of and the degree of glycosylation depends upon the nature of the recombinant host organism employed and such variations as may occur are included :~ri thi n thz arnbi t of tiai s i ovsn ti an. F i nal ly, toe po ten ti al ~xi sts in the use of DNA technology for the preparation of various derivatives of human IGF and human EGF by simple modification of the underlying gene sequence for such molecules. Such modifications could be accompiisi~~d by means of site directed mutagenesis of the underlying DNA, as an example. All such modifications resulting in deri vati ves of human IGF and human EGF are i ncl uded Lei thi n the scope oP the present invention so long as the essential characteristic human IGF and human EGF activities remain unaffocied in kind.
"Essentially pure form" when used to describe the state of human IGF or human EGF produced by this invention mzans that the proteins are free of proteins or other materials normally associated with' human IGF or human EGF yvhen produced by non-recombinant cells, i.e.
in their "native" environments.
"Expression vector" includes vectors which are capable of expressing DNA sequences contained therein, where such sequences are operably linked to other sequences capable of effecting toeir expression, i.e., promotor/operator sequences. In sum, "expression vector" is given a functional definition: any DNA sequence which is capable of effecting expression of a sp~cifi~d DNA code disposed therein. In general, expression vectors of utility in recombinant DNA teconi ques are often i n the form of "pl asmi ds" whi;.h refer to circular double stranded DNA loops which in their vector form, are not bound to the chromosone. In the present specification, "plasmid" and "vector" are used interchangably as the plasmid is the most commonly used fow~ of vector. However, toe i nventi on i s intended to include such other fon;~s of expression vectors which function equivalently and which become known in the art subsequently.
"Recombinant host cells" refers to cells ;~hich have been transformed with such vectors. Thus, the human IGF and human EGF
rnol ecul es produced by such cel l s can be referred to as "recombi nant ~numan IGF" and "recomuinant human EGF".
B. Host Cell Cultures and Vectors The vec torn and ~netliods di scl osed herei n a re sui taol s f or use i n host cells over a wide range of prokaryotic and eukaryotic organisms.
In general, of course, prokaryotes are preferred for cloning of DtJA sequences in constructing the vectors useful in the invention.
For exampl e, E. col i K12 strai n 294 (ATCC PJo. 31440 i s particul arly useful. Other microbial strains w~ich may be used include _E. coli strains such as E. coli B, and E. coli X1775 (ATTC No. 31537). The aforementioned strains, as well as E. coli W3110 (F-, a-, prototrophic, ATTC No. 27325), bacilli such as Bacillus subtilus, and other enterobacteriaceae such as Salmonella typhimurium or Serratia marcesans, and various pseudomonas species may be used.
These examples are, of course, intended to be illustrative rather than limiting.
In general, plasmid vectors containing replicon and control sequences which are derived from species compatible v~itn the host cel l are used i n connection vi th these hosts. The vector ordi nari ly carries a replication site, as well as marking sequences which are capa~l2 of providing phenotypic selection in transformed cells. For example, E. coli is typically transformed using pBR 322, a plasmid deri ved f rom an E . col i sj~ec i es ( Bol i var, et al . , Gene 2: 95 (1977)). pBR322 contains genes for ampicillin and tetracycline resistance and thus provides easy means for identifying transformed cells. Tie pBR322 plasmid, or other microbial plasmid must also contain, or be modified to contain, promoters which can b~ used by the microbial organism for expression of its own proteins. Those promoters most commonly used in recombinant DNA construction include the ~-lactamase (penicillinase) and lactose promoter systems (Chang et al, Nature, 275: 015 (1978); Itakura, et al, Science, 198: 1050 (1977); (GOeddel, et al iJatur~ 281: 544 (1979)) and a tryptophan !+r~1 ~...n..~~+.~... j~ j~n.~ / j~n.~.lol~ .'~ al ~;',i~ln;.. I,ri.lj lo.~j ~. /~1,C7 r' i ~ i ( 1980 ) ; EP0 Appl Publ i~lo. 0030770) . Whi 1 a these a re the rnos t commonly used, other microbial promoters have been discovereJ and utilized, and details concerning their nucleotide sequences have been published, enabling a skilled worker to ligate then functionally with plasmid vectors (Siebenlist, et al, Cell 20: 2G9 (1980)).
In addition to prokaryates, eukaryotic microbes, such as yeast cultures may also be used. Saccharomyces cerevisiae, or common baker's yeast is the roost commonly used among eukaryotic microorganisms, although a number of other strains are comrnonly availa5le. For expression in Saccharomyces, the plasmid YRp7, fir example, (Stinchcomb, et al, Nature, 282: 39 (1979); Kingsman et al, Gene, 7: 141 (1979); Tschemper, et al, Gene, 10: 157 (1980)) is commonly used. This plasmid already contains the trill gene whic~
provides a selection marker for a mutant strain of yeast lacking the abi 1 i ty to grow i n tryp tophan, for exaopl a ATCC i~do. 44070 or PEP4-1 (Jones, Genetics, 85: 12 (1977)). The presence of the trill lesion as a characteristic of the yeast host cell genome then provides an 1~
effective environment for detecting transformation by grow th in the absence of tryptophan.
Suitable promoting sequences in yeast vectors include the promoters for 3-phosphoglycerate kinase (Hitzeinan, et al., J. 8iol.
Chem., 255: 2073 (1980)) or other glycolytic enzymes (Hess, et al, J. Adv. Enzyme Reg., 7: 149 (1868); Holland, et al, Biochemistry, 17: 4900 (1978)), such as enolase, glyceralde~iyde-3-phosphate dehydrogenase, hexokinase; pyruvate decarboxylase, phosphofructokinase, glucose-5-phosphate isomerase, 3-phosphoglycerate mutase, pyruvate kinase, triosephosphate isomerase, phosphoglucose isomerase, and glucokinase. In constructing suitable expression plasmids, the termination sequences associated ~vith these genes are also ligated into the expression vector 3' of the sequence desired to be expressed to provide polyadenyl ati on of the i;~RivA and ter;ni ~idtl Jrt. Otoea~ promoters, ,phi ch have the additional advantage of transcription controlled by growth condi ti ons are the promoter regi ons f or al coi~ol dehydrogenase 2, isocytochrome C, acid phosphatase, degradative enzymes associated with nitrogen metabolise, and the aforementioned glyceraldehyde-3-nhosuhate dehydrogenase, and enzymes responsible for maltose and 13 4149 ~
galactose utilization (Holland, ibid.). Any plasmid vector cootai ni ng yeast-compati bi a promoter, on gi n of repl i cati o;i and termination sequences is suitable.
In addition to microorganisms, cultures of cells derived from multicellular organisms may also be used as hosts. In principle, any such cel 1 cul lure i s wor~:abl e, :v he ther f rur~ verteorate or invertebrate culture. However interest has been greatest in vertebrate cells, and propogation of vertebrate cells in culture (tissue culture) has become a routine procedure in recent years [Tissue Culture, Academic Press, .Cruse and Patterson, editors (1973)x. Examples of such useful host cell lines are VERO and HeLa cells, Chinese hamster ovary (CHO) cell lines, and W138, 3HK, COS-7 and MDCK cell lines. Expression vectors for such cells ordinarily ~5 include (if necessary) an origin of replication, a prornoter located in front o.f the gene to be expressed, along r~ith any nec~ssery ribosome binding sites, NNA splice sites, polyadenylation site, and transcriptional terminator sequences.
- For use i n mammal i an cel l s, the control functions on toe expression vectors are often provided by viral material. For example, coimnonly used promoters are derived from polyoma, Adenovirus 2, and most frequently Simian Virus ~0 (SV~O). The early and late promoters of SV40 virus are particularly useful because both are obtained easily from the virus as a fragment which also contains the SV40 viral origin of replication (Fiers, et al, idature, 273: 113 ( 1978). ~ Smal l er or l arger SV4J fragments rnay also be used, provided there is included the approximately 250 by sequence extending from the Hind III site to»rard the 8g1 I site located in the viral origin of replication.
Further, it is also poS5lble, and often desirable, to utilize promoter or control sequences normally associated :rito toe desired gene sequence, provide such control sequences are compatible with tree host cell systems.
An origin of replication may be provided either by construction of the vector to include an exogenous origin, such as may be derived from SV:I~0 or other viral (e. g. Polyoma, Adeno, VSV, BPV, etc.) source, or may be provided by the frost cell chromosomal replication mechanism. If the vector is integrated into the host cell ci~romosome, the latter is often sufficient.
C. ~~ethods Employed If cells without formidable cell wall barriers are used as host cells, transfection is carried out by the calcium phosphate precipitation rnetihod as described by Graham and Van der Eb, Virolo y, 52: 545 (1878). However, other methods for introducing O~dA i nto cel 1 s such as by nucl ear i njecti on or by protopl ast fusi on may also be used.
If prokaryotic cells or cells which contain substantial cell wall constructions are used, the preferred method of transfection is calcium treatment using calcium ci~loride as described by Cohen, F.N.
et al Proc. iJatl. Aced. Sci. (USA), 58: 2110 (1972).
Construction of suitable vectors containing the desired coding and control sequences employ standard ligation techniques. Isolated plasmids or D~JA fragments are cleaved, tailored, and religated in the form desired to form the plasmids required.
Cleavage is performed by treating with restriction enzyme (or enyzmes) in suitable buffer. In general, about 1 wg plasmid or D?JA' fragments is used with about 1 unit of enzyme in about ZO ~l of buffer solution. (Aj~propriate buffers and substrate amounts for particular restriction enzymes are specified by the manufacturer.) Incubation times of about 1 hour at 37°C are ~~rorkable. After incubations, protein is removed vy extraction vit~~ phenol and chloroform, and the nucleic acid is recovered from the aqueous fracti on by preci pi tati on ~r~i th ethanol .
.. . a 134t49t If blunt ends are required, the preparation is treated for 15 minutes at 15" ;vita 10 units of Polymerase I (Klenotv), phenol-chloroform extracted, and ethanol precipitated.
Size separation of the cleaved fragments is performed using 5 percent polyacrylamide gel described by Goeddel, D., et al, Nucleic Acids Res., 8: 4057 (1980) incorporated herein by reference.
For ligation approximately equimolar amounts of the desired components, suitably end tailored to provide correct matching are treated with about 10 units T4 DNA lipase per 0.5 ug DNA. (When cleaved vectors are used as components, it may be useful to prevent religation of the cleaved vector by pretreatment with bacterial alkaline phosphatase.) Far analysis to confirm correct sequences in plasmids constructed, the ligation mixtures are used to transform E. coli ~C12 strain 294 (ATCC 31440), and successful transfornants selected by ampicillin resistance where appropriate. Plasmids from the transfonnants are prepared, analyzed by restriction and/or sequenced by the method of P4essing, et al, Nucleic Acids Res., 9:309 (1981) or by the method of Maxam, et al, Methods in Enzymology, 65:499 (1980).
Examples ' The following examples are intended to illustrate but not to limit the present invention.
Synthesis and Expression of Human IGF-1 Enzymes were obtained from the follo;ving suppliers:
New England Biolabs: restriction enzymes, T4 DNA lipase Bethesda research Labs: restriction enzymes, Bact. Ali;aline ~~ 41491 Phos.
Boehringer-Mannheim: E. cola DNA Polymerase I (Klenow) p+L Biochemicals: Polynucleotide kinase, Terminal Nucleotidyl Transferase New England Nuclear:
pBR322 [oligo(dG)-tailed] DNA
Reagents:
BioRad: Bis Acrylamide, Acrylamide, TEMED
Sigma.: Ammonium Persulfate Amersham: 10210 7 32p ATP >5000 Ci/mmol; 10165 a 32p dCTP 400 >Ci/mmol.
Solutions and Media: 1X TBE:~ .54M Tris Base, 0.54 M Horic Acid, .017 M Na2 EDTA.
Difco: Yeast Nitrogenous Base (YNB); Tryptone, Yeast Extract: Bacto-Agar; Casamino Acids.
Autoradiography:
Kodak X-0 mat AR XAR-2~ Film Glass Beads:
0.45-0.50 mM B.Braun Melsungen AG
LB medium (per liter) lOg NaCl; 5g yeast extract: lOg tryptone; .17m1 NaOH (50 percent) LB Agar (per liter):
lOg tryptone; 5g yeast extract; .5g NaCl; 15g Bacto-Agar:
adjusted to pH 7.5 with NaOH.
Antibiotics:
Tetracycline (5 ~g/ml) in all mediums; Ampicillin (20 ~g/ml) .in all mediums (plates or liquid) ~3 4149 ii9 i~ledi um (per 1 i ter) 6g Na2HP04 (anhydrous); 1g NH4C1; 3g KH2P04; .5g NaCI ; 1 ;nit iigSO,~; 0.5 percent (svlv) gl ucose; 0.5 percent (:v/v) Casamino Acids; .0001 percent Thiamine-HCI.
YNB-CAA (per liter):
5.7g Yeast Nitrogenous Base (without Amino Acids); 10 mg adenine; 10 mg uracil; 5g Casamino Acids; 20g Glucose.
YiJ3-CAA agar pl ates ( per l i ter) Same as YN3-CAA + 30g agar.
Standard Ligation Conditions:
10-fold molar excess of insert (or linker) to vector. 1X T4 DNA ligase buffer and 400-800 U T4 DNA ligase; 14° - 12-16 ~~ours.
Standard Kination Conditions:
1X Polynucleotide Kinase buffer; 15 U polynucleotide kinase;
37° 00 minutes; followed by reaction termination by heating to 6~° for 10 minutes.
1X Kinase Buffer:
70 m~~1 Tris-HC1 (pH 7.6); 10 mid i~1gC12; 5 nil DTT
' 1X T4 DNA Ligase Buffer:
50 m~~l Tris-HCl (pH 7.8); 10 rust ~4gC12; 20 r~i~t DTT; 1 mt1 rATP.
Construction, Strategy and Selection of a DiJA Sequence.
The 1° protein structure of the human IGF-1 molecule has been determined (1). Based upon t~~is protein sequence and the genetic code, a DNA sequence coding for mature human IGF-1 protein, including all possible base substitutions at any one base position, was determined by computer analysis (Genentech Untrans Program).
1s 41491 Using a restriction sits analysis program (Genentech Asearch Program), all potential restriction sites located in all possible DNA sequences consistently coding for the same protein were found.
Three sites internal to the coding sequence were selected: PstI, BamHI, and AvaII. Two additional sites were placed at the ends, just outside of the coding sequence of the mature protein: one EcoRI site before the initiation codon, AUG, and the SaII site following the termination colon, TAG of the coding sequence. The choice of these sites facilitated the cloning of the coding sequencz in separate parts, each of which subsequently could be excised and then assembled to form an intact synthetic IGF-1 gene. This construction involved the assembly of 4 parts, 2 parts forming the left half, 2 parts fo ,~ing the right half. Each part consisted of two single strands of chemically synthesized DidA (see Fig. 1).
~5 Proposed synthetic fragments were also analyzed for internal complementarity.
The constructions used to generate these four parts employed the use of DNA Polymerase I repair synthesis of synthetic 20 oligonucleotide substrates having 9-10 by stretches of complementary sequence at their 3' termini. In the presence of DNA Polymerase I
(K1?now) and the four deoxynwleoside triphosphates, these primer-templates were extended to become full-length double-stranded DNAs. To prevent priming at locations other than the desired . 25 portions as well as self-hybridizations, each set of Single-stranded DNAs were analyzed by a computer program (Genentech Homology Program), and wherever possible, sequences which would have potentially led to hairpin loops, self-priming, or rnis-priming, were eliminated by alternate colon usage. Each of these four 30 double-stranded DidAs were synthesized to include 9-12 additional by of non-IGF-1 coding DNA at each end (see Fig. 2). This additional DNA ,~~as included to allow generation of sticky ends by restriction enzyme digestion. The sticky ends thus formed facilitated the ligation of the double-stranded pieces to contiguous coding sections 35 of the synthetic gene or into a cloning vehicle.
1~~14J1._ The 9-12 extra by of double stranded DNA beyond the restriction site at the end of each part (see Fig. 2) allo~red for the TdT-mediated formation of single-stranded oligodeoxycytidine strands at the 3' ends of each double-stranded DNA section. These oligodeoxycytidine tailed double-stranded DNAs could then be anneaiied into a complementary oligodeoxyguanosine tailed Pstl site of a cloning vehicle. Once cloned, and sequenced to ensure the correct base sequences, the parts could be easily isolated and 1 i gated f of 1 ovai ng restri cti on enzyme cl eavage at the res tri cti on sites selected at the ends of each of the four parts, to form the intact synthetic IGF-1 gene.
The method used successfully here was similar to that described by Rossi et al. (28); ho:~ever, attempts at the construction and cloning of the IGF-1 coding sequence using the Rossi et al. method (28) ~~ith,only two base pairs of extra DNA beyond the restriction enzyrne recognition sites repeatedly failed. The method employed here also differs from the Rossi et al. procedure (28) in that restriction sites placed at both ends of a double stranded DNA allow for the convenience of cloning each double stranded DNA fragment, individually, by (dC)-tailing and annealling into a (dG)-tailed vector, a method which in practice requires less of the double stranded DNA than three-part ligations.
Chemical Synthesis Eight fragments, 43, 43, 40, 4b, 46, 46, 54, and 4v bases in length (see Fig. 1), were chemically synthesized according to the method of Crea and horn (2), the only change being the use of mesitylene nitrotriazole as the condensing agent rather than 2,4,6 Triisopropyl benzenesulfonylchloride tetrazole.
The syntheses of the fragments were accomplished from the appropriate solid support (cellulose) by sequential addition of the appropriate fully-protected dimer- or trimer-blocks. The cycles i3 41491 were carried out under the same conditions as described in the synthesis of oligothymidilic acid (see Crea et al., supra). The final polymers were treated ;pith base (aqueous conc. NH3) and acid (80 percent HoAc), the polymer pelleted off, and the supernatant evaporated to dryness. The residue, dissolved in 4 percent aq.
NH3, was washed with ethyl ester (3X) and used for the isolation of the fully deprotectad fragment.
Purification was accomplished by electrophoresis using 20 percent polyacrylamide gels. The pure oligonucleotide was ethanol precipitated following gel elution.
225-285 pmoles of each chemically synthesized fragment was mixed with an equivalent amount of the complementary single-stranded DNA
~5 fragment (i.e. 1L+3L; 2L+4L; 1R+3R; 2R+4R) in the presence of deoxyri bonucl eosi de tri phosphates at a f i nal concantrati on of 2100 uv wi th the excepti on of dCTP. di,TP was added to a concentration of 5 uiv as a a32P-labeled isotope with a specific activity of 1000-2000 Ci/~unol) to allow easy monitoring of the repair-synthesis reaction 2p product. The reactions were carried out in a buffer containing a f i nal concentrati on of 50mM Tri s HC1 pH 7.5; 20 m~1 fAgCl 2; 20 m~~i DTT and 154 DNA Polymerase I (Klenow) in a reaction volume of 200 ul. Reactions were allowed to proceed at 4' for 12-18 hrs.
25 Upon completion, EDTA was added to a concentration of 25 mid.
Sample Suffer containing the mixes were phenol extracted, CHC13 extracted 2X, and products were etOH precipitated. Pellets were taken up in .3 M NaOAc and the DNA reprecipitated with etOH. Aft' r dissolving the pellets in H20, the 1L+3L and 2L+4L products were 30 then digested separately with PstI in 100 ul reaction mixes contai ni ng 1X PstI buffer ( 50mi~1 ( NH4) 2504, 20 miH Tri s HC1 pH
7.5, 10 mM MgCIZ), and 70 U PstI. After 4 hrs, EDTA ~,~as added to a concentration of 10 m"~I, and the material vas ethanol precipitated. Pellets were then taken up in .3 (~! NaOAc and 35 r2precipitated, then taken up in H20. The PstI-digested 1L+3L
product was digested with EcoRI at 37" in a 100 ul reaction mix 1X
EcoRI buffer ( 150 m~~t NaCI , 5 mil Tri s HC1 pH 7.5, 6 ru~i ~lgCl 2 ) and 70 U EcoRI. The Pstl digested 2L+4L product was digested at 37' with BamHI in a 100 ~1 reaction mix in 1X BamHI Buffer (150 mM NaCI, G m~~l Tri s HC1 pH 7.9, G mil ~IgCl 2) and 70 U BamHI. After 4 hrs, EDTA was added to both mixtures, and sample buffer was added. They were electrophoresed on a 6 percent polyacrylamide slab gel. Six percent slab gels were cast with a mixture containing 6 percent (w/v) acrylamide (20 to 1 ratio of acrylamide to Bis acrylamide) 1X
TBE, 1 percent APS and 0.1 percent TE~1ED. Reaction products were located on the gel by autoradiography and the oand corresponding to the ~5 by EcoRI-PstI digested 1L+3L product (Part 1) (see Fig. 3) and the band corresponding to the 50 by PstI-BamHI digested 2L+4L
product (Part 2) (see Fig. 3) were excised from the gel, the material electroeluted in 0.2X TBE, phenol extracted, CHC13 extracted, and ethanol preci pi tated. Parts 1 and 2 v~ere di ssol ve~.i i n H 20 .
Clonin3 Vector Prep.
Cloning vector eras prepared by digesting 20 ug pBR322 (15) with 50 U tcoRI and 50 U BamHI, in 1X RI Buffer at 37' For G hr. after addition of EDTA to a concentration of 10 mil, sample buffer was added, and the mixture was run on a 5 percent polyacrylamide gel.
The gel ivas developed by staining 10' in H20 containing 5 ug/ml Et. Bromide, rinsing 2X in H20 and placing upon a UY
transilluminator (302 n~~). the band corresponding to the ca. 3712 by EcoRi-BamHI digested pBR322 molecules was cut from the gel. 1'he~
DyA was electroeluted from the gel slice, phenol extracted, CHC13 extracted 2X, and ethanol precipitated. The pellet was dissolved in H20 and was ready for ligation.
Li q_ati on.
In a three-part ligation (see Fig. 4), in which the molar ratio of inserts to vector in the ligation reaction was approximately 10 to 1, parts 1 an:I 2 were ligated into the EcoRI-BamHI digested 322 vector in 1X T4 DNA lipase buffer (cont. 50 m~ Tris HC1 pH 7.8; 10 rciN i4gCl 2, 20 rvi~i DTT, I mM rATP ) and X800 U T4 D~dA 1 i gase ( NEB ) .
The reacti on was carri ed out at 14° for 12-lu hrs.
Transf ormati ons E. coli strain 294 was used as the transformation host, using the procedure of 'rvl. Dagert and S.D. Ehrlich (3). The transformed cells ~:rere plated on LB-agar plates containing ampicillin (20 ug/ml;
LB-Amp-plates) and transformants were screened and grown in LB
medium containing ampicillin at 20 ~g/ml ampicillin. Transformants were screened using a modification of the rapid miniscreen method of Birnboim and Doly (4). htiniprep DiJA prepared as such was digested wits EcoRI, and 3amHI and run on polyacrylamide slab gels. Several transf or~nants which illustrated a ca. 218 by EcoRI-BamHI insert were gro~vn i n 1 arge scal a and pl asmi ds from each were i sol ated and sequenced according to the procedure of ~taxam and Gilbert (5) to .confirm the correct chemical synthesis and construction. The pBR322 vector containing the complete correct left half sequence of IGF-1 vas called IGF-1 LH 322 (see Fig. 5).
Cloning of Fragments of the Right Half of IGF-1.
Using the identical conditions of DNA Polymerase I-mediated repair-synthesis, the two pairs of fragments comprising the right half of the synthetic IGF-1 were converted into double-stranded DNAs. After the DNA Polymerase I reactions, and without enzymatic digestion, the 1R+3R (Part III) and 2R+4R (Part IV) reactions were run on a 5 percent polyacrylamide slab gels. The 83 by (Part III) and 91 by (Part IV) bands were located by autoradiography and cut from the gel. After electroelution the ethanol precipitated double-stranded DNAs were dC-tailed (see Fig. 6) using the procedures of Villa-Komaroff et al. (b) and Rowenkamp and Firtel i~ 41491._ (7). Reactions were carried out in 50 ul vols. of 1X tailing mix (cont. .2~9 Pot. Cacodyl ate, 25 mil Tri s HC1 pH 5.9, 2 mil DTT, .5 m;~l CoCl2) and 22 um dCTP. After prewarning at 37° for 10', the 150 second reaction ;vas begun by the addition of 10-20 units of terminal nucleotidyl transferase and terminated by addition of EDTA followed by phenol extraction, CHC13 extraction 2X, and ethanol precipitation.
These oligo (dC) tailed Parts III and IV were then separately mixed with equimolar amounts of oligo (dG)-tailed PstI cut pBR322 vector i n 50 ul of 1X anneal l i ng buffer ( .1t~1 NaCI ; 10 m~1 Tri s HC1 pH
7.8, 1 mil EDTA) at a final DNA concentration of 1-2 ug/ml. After heating to 75°C, the mixes were gradually cooled to 4° over a period of lti hr and the mix transformed into competent E. coli 294 cells prepared according to the procedure of Dagert and Ehrlich (3).
Transformed cells were plated on L8-Tetracycl=,ne-Agar plates and grown in LB-Tetracycline medium at tetracycline ;.oncentrations of 5 ~g/ml. Tetracycline resistant transformants were picked and plated onto LB-Ampicillin-Agar plates to check for insertions at the PstI
.site. Several tetracycline resistant, Ampicillin-sensitive colonies for each Part 3 and r+ ~.vere mi ni screened and those exhi bi ti ng insertions at the PstI locus were grown in large scale and sequenced ~y the I~1axam and Gi 1 pert techni que ( 5) to conf i rm the correct DNA
sequences of Parts 3 and 4.
Construction of an Intact Synti~etic HuIGF-1 Coding Sequence Preparation: Parts 3 and 4.
Parts 3 and 4 :rere separately removed from their vectors by digestions of 20 ug of each vector with AvaII in 1X AvaII buffer (GO
mil NaCI , 6 mid Tri s-HC1 ( pH 8. 0 ) ; 10 m'1 ~IgCi 2; 6 mM
2-mercaptoethanol) and 30 U of AvaII. After o hr., at 37', EDTA was added to the 150 ul reactions to a concentration of 15 min and the material phenol extracted, CHC13 extracted 2X and ethanol 1s 41491 precipitated. The Part 3 pellet was then taken up in 1X BamHI
buffer and digested in a volume of 150 ul with 30 U BamHI at 37° for 4 h r. The pellet containing Part 4 was digested with 30 U SaII in 150 ul of 1X SalI buffer at 31° for 4 hr.
Both digests were then run on 6 percent polyacrylamide slab gels and stained. The 5i by band representing Part 3 and the G2 by band representing Part 4 were removed from the gels and the DNA
electroeluted, phenol extracted, CHC13 extracted 2X and ethanol precipitated. Pellets were then taken up in H20 and were ready for ligation.
Vector Preparation 20 Ng of the IGF-1 LH 322 vector was digested with 50 U of BamHI
and 50 U o.f SaII in a 200 ,~1 reaction contain~~~g 1X BamHI buffer at 37" for 5 hr. After addition of EDTA to a concentration of 15 mM, the digestion mix was run on a o percent polyacrylamide slab gel, ethidium bromide stained and the 3814 by band excised from the gel.
After electroelution, phenol extraction, chloroform extraction and ethanol precipitation, the DNA pellet was taken up in H20 and was ready for ligation with Parts 3 and 4 in a three-part ligation.
The 1 i gati on teas performed under condi ti ons descri bed above for a three-part ligation isee Fig. 7). Parts 3 and 4 were present in the ligation mix at a 10-fold molar excess of inserts to vector. The mix was transformed into competent E. coli 294 cells prepared according to the Dagert and Ehrlich procedure (3) and plated onto -LB-Ampicillin plates. Several transformants were miniscreened and two clones exhibiting a ca. 115 by BamHI-SaII fragment were grown in large scale and their plasmids prepared. Both strands of the intact synthetic gene were sequenced by the Maxam-Gilbert technique (5) to confir;n the correct sequence. The pBR322 plasmid containing the complete correct sequence coding for Human IGF-1 was called paR322 HuIGF-1.
1 ~ 4 'I 4 ~ 1 Human IGF-1 Expression IGF-1 Fusion Expression in Bacteria Initial attempts :sere to obtain expression of IGF-1 as a fusion protein. To accomplish this, both t~~e pNCV (9) and the pNCVsLE (10) expression vectors were used. (The pNCVsLE expression vector is a derivative of the pNCV vector and :gas prepared as follows: pNCY ~~as treated with BgII, which cleaves at the 13 codon of the LE fusion.
The site was converted to an ECoRl cleavage site using synthetic DNA, to give the expression vector ptdCVsLE. The synthetic DNA
introduced into the plasmid has the sequence:
5'-GATCCAGAATTC
5' GATCGAATTCTG and this sequence was introduced into the plasmid:
GATCCAGAATTC
GTCTTAAGCTAG
As a .strategy to r~l ease the f used human ..GF-' p.'o t~. n from the trp fusion protein, a linker was designed such that an enzymatic proteolysis met~~od reported by Wunsc~~ et al. (8) could be applied to this expression system. To accomplish this, a D~JA linker:
P roAl a 5'-AATTCCCTGCCG -3' 3' GGGACGGCCAG-5' was chemically synthesized by standard methods (2) :vhich when linked to the trp.fusion protein and the IGF-1 gene, coded for the amino acid resi dues Prol i ne and Al ani ne fol l o'yved by Glyci ne and Prol i ne 4ahich are the first two amino acid residues of IGF-1 and preceded by Proline and Alanine together comprise a recognition site for a collagenase isolated from Clostridium histolyticum (11,12). This enzyme reportedly acts at such a site to cleave tt~e alanine-glycin2 peptide bond.
To construct a DNA sequence coding for a fusion protein with a collagenase cleavage sits, 30 ug pBR322 HuIGF-1 plasmid was cleaved with 50 U BamHI and 50 U PvuI enzyme in 200 ul 1X BamHI buffer at 37° for o hours. After addition of EDTA to a concentration of 15 m;~~1, the reaction mix was chromatographed on a 6 percent polyacrylamide slab gel. The smaller PvuI-BamHI fragment (-725 bp) was isolated and digested i;rith 40 U
AvaI I i n 150 ul 1X Sau95I buffer (60 mil fdaCl , 6 m~~1 Tri s-HC1 pH 7.4, 15 m~~1 i~IgCl 2, 6 ru~1 2-mercaptoethanol ) . After addi ti on of EDTA to a concentration of 15 mt~, the resulting mix chromatographed on a 6 percent polyacrylamide slab gel. The smaller Sau96I-BamHI fragment (~86 bp) was extracted from the gel, phenol extracted, chloroform extracted 2X, and ethanol precipitated. This fragment was ready for ligation.
200 pmols of linker fragments were kinased with 100 U polynucleotide kinase in 20 ul of 1X polynucleotide kinase buffer (70 m~~1 Tris-HC1 (pH
7.6); 10 m~1 MgCl2; 5 mgt DTT; 1 mf~t rATP) at 37° for 1 hour. The reaction was terminated by heating to 55°C for 5 minutes. 100 pmols of the kinased linker fragments were ligated to the 86 by Sau96I-3amHI
fragment with 400 U of T4 DNA ligase in 30 ul of 1X T4 DNA ligase buffer at 14° for 12-15 hours. The ligation reaction was terminated by addition of EDTA to a concentration of 15 m~i followed by phenol extraction, chloroform extraction 2X, and ethanol precipitation. The pellet was then taken up in 1X BamHI buffer and digested in a 100 ul reaction v~ith 50 U
2p of EcoRI and 50 U of BamHI at 37° for 6 hrs. After terminating the digestion with EDTA, the mixture was chromatographed on a 6 percent polyacr',~la~fide slab gel and the nearly created (-97 bp) EcoRI-BamHI
fragment was extracted from the gel, and prepared for ligation. The vector to receive this new fragment was prepared by digesting 30 ug .
pBR322 HuIGF-1 with 100 U of each EcoRI and BamHI i.n 200 ~l of 1X 3amHI
buffer at 37° for 8 hr. The reaction was terminated, chromatographed on a 6 percent polyacrylamide slab g21 and the larger band ("'3830 bp) representing the EceRI-BamHI digested plasmid was isolated and tt~e plasmid DNA extracted and prepared for ligation as above. In a 30 ul ligation reaction containing a 10-fold molar excess of insert fragment to vector, the EcoRI-BamHI fragment .vas ligated into the EcoRI-BamHI
digested plasmid pBR322 HuIGF-1 under standard ligation conditions mentioned above. Competent E. coli 294, prepared as above (3), were used as transformation hosts and the transformed cells were plated onto LB-Ampicillin agar plates. Several transformants were picked, 1~ 414 J ~
miniscreened as above (4), and two exhibiting an EcoRI-BamHI insertion were grown in large scale and their plasmids purified. Using thQ
;~laxam-Gilbert procedure (5) the construction ,vas sequenced to verify the correct synthesis and insertion of the ~coRI-Sau96I collagenase linker.
This plasmid vas called pBR322 HuSynIGF-1-M.
To prepare this EcoRI-SaII IGF-1 coding sequence for insertion into pNCV and pNCVsLE, 30 ug of pBR322 HuSynIGF-1-M was digested with 70 U of SaII in 200 ul of 1X SalI buffer (150 mM NaCI, o mM Tris-HC1 (pH 7.9); o m'~1 MgCl2; 6 ~u~l 2-mercaptoethanol ) at 37° for o hours. After addi ti on of EDTA to 15 mM, the mixture was phenol extracted, chloroform extracted 2X, and ethanol precipitated.
Using standard chemical synthesis procedures (2) a SaII-EcoRI linker 5' TCGACGTACATG 3' 3' GCATGTACTTAA 5' was synthesized and 400 pmols kinased, as above. 200 pmols of the kinased linker was ligated to the SaII digested pBR322 HuSynIGF-1-i~l (prepared above) with 800 U T4 DNA ligase in 30 ul of 1X ligation buffer for 12-16 hours at 14°C.
After termination of the reaction with EDTA, the mixture was phenol extracted, chloroform extracted 2X, and ethanol precipitated. The pellet was then taken up in 1X EcoRI buffer and digested with 100 U EcoRI in a volume of 200 ul for $ hours at 37". After addition of EDTA to a concentration of 15 ~n~'~, the mixture was chromatographed on a 6 percent polyacrylamide slab gel. The gel was stained and the 230 by bari~
corresponding to the EcoRI-EcoRI HuIGF-1 fragment was extracted from the gel, phenol extracted, chloroform extracted 2X, and ethanol precipitated. This fragment was ready for ligation into pNCV and pNCVsLE. pNCV and pNCVsLE were prepared for ligation by digestion of 20 ug of each with 100 U EcoRI in 200 ul 1X EcoRI buffer at 37" for 8 hours. After digestion, 200 U of bacterial alkaline phosphatase was added to each reaction and the mixtures warned to u5"C for 2 hours. EDTA
vas added to a concentration of 15 m~i and the nixes :were phenol extracted 3X, chloroform extracted 2X and then ethanol precipitated. These expression vectors ~rere prepared for ligation.
Ligations of the EcoRI-EcoRI Human IGF-i fragment into the two expression vectors were performed in 30 ul reaction volumes in 1X T4 DidA
ligase buffer with 800 U T4 DNA ligase at 14° for 12-16 hours. The EcoRI-EcoRI fragment eras present at a 10-fold molar excess to vector.
Competent E. coli 294 were prepared (3) (ATCC 3144G) and used as transf onnation hosts for the ligations. Transformed cells were plated onto LB-agar plates containing tetracycline (5 ug/ml; LB-Tet-plates) and transf ornants were mi ni screened ( 4) . Phi ni screen pl asmi d DNA f rom transformants of the pNCV-IGF-1 construction were digested with both PstI
and BgIII to determine the orientation of the EcoRI fragment insertions.
Two clones whose plas~nids contained a -570 by BgIII-PstI fragment (as opposed to a 690 by fragment) were grown in large scale and their plasmids prepared: The construction was sequenced using the Maxam-Gilbert procedure (5) to confirn the correct insertion at the function of the try fusion and IGF-1 protein coding sequences as well as retention of the desired reading frame. Plasmids with the correctly inserted IGF-1 fragment s-aere called pidCVLE-IGF-1. Transformants of the pidCV-sLE-IGF-1 construction were also miniscreened by the same procedure (5), and the plasmid DNAs were digested with HincII and Pstl. Two clones exhibiting a 150 by HincII-PstI fragment (as opposed to a "105 by HincII-HincII fragment) were gro:vn in large scale and their plasmids prepared. Usi ng the i~laxam-Gi 1 bert techni ques ( 5 ) , the f uncti ons of the trp fusion and IGF-1 protein coding sequences were sequenced to ascertain proper orientation and retention of the proper reading frame. Those plasmids possessing the correct insertion and proper reading frame were called pNCV-sLE-IGF-1.
To attempt expression of each of these constructions, 'two clones, one possessing pNCV-IGF-1 and the other possessing pNCV-sLE-IGF-1, were inoculated into 10 ml i~19-Tetracycline culture medium supplemented with .~;
1s~14~1 0.5 mg/ml Tryptophan. A clone containing pNCV-LE with no IGF-1 gene insert was also inoculated into c~lture medium to provide as a negative control in assays.
Af ter 12-16 hours gro:~th wi at 3 th agi tati on, 0.5 rnl of these cultures were used to inoculate0 2 milliliters of M9-Tetracycline culture medium. After growing 12-16 fo hours at 37' with agitation, the cells were harvested by centrifugtion at rpm for minutes in a Sorvall GSA rotor. The refractilbodies were purified from the pe112ted cells by: a) suspending the cells host in a buffered solution of ionic strength suitable to solubilizest m of the host protein, b) subjecting the suspension to cell wall/membrne disruption, c) centrifuging the disrupted suspension at lo4r to speed fo rn a pellet, optionally repeating the foregoing steps, and d) ring recov the heterologous protzin as rzfractile bodies in the pelleteference ( 13).
A
small quantity of refractile particles of each a of t three preparations was boiled in SOS
and 2-mer~captoethanol containingample buffer and run on SOS-polyacrylamide slab gels ding acco to the Laemmli met~~od (1~).
The size of the protein expressed NCII-IGF-1 by (LE-IGF-1) was "28,670 20 Daltons (see Figure 7), and Daltons "9770 for the pNCU-sLE-IGF-1 protein ( sLE-IGF-1 ) ( see Fi gure t:vo 8) . Thes expressed protei r~s :vere subjected to solubilization in 6iv1 Guanidine-HCl followed by 50-fold dilution with dilute buffers. The final bufferfor pNCV-IGF-1 after dilution was 0.12 P~ Guani di ne-HC1 ; .05 ~~I 8, Tri s-HC1 p 20 percent glycerol ;
0.1 mg/ml.
BSA;
25 .15 M NaCI; 0.1 mgt EDTA and inal the f buffer after,dilution of the pNCY-sLE-IGF-1 refractile bodiesas 0.1~
i4 Guanidine-HCI;
m~1 Tris-HC1 pH 7.6; 10 ~I CaCl2. After ing spinn out particulate matter, the two solutions containing solubilizedrp-IGF-1 fusion proteins were assayed by a radioimmune assay procedureof Furlanetto et al.
(23), as modified 30 by Hi ntz et al . ( 2~) . Bothn fusi o protei ns demonstrated ac ti vi ty i n thi s assay. A negative control prepas w also included in the assay and the control exhibited no measurabletivity.
ac Expression and Secretion in Yeastl To avoid the necessity of refr~actile body purification and solubilization, from bacterial cell lysates, yeast expression-secretion systems were sought as an alterna ive. Aside from the advantage of avoiding protein purification fro cell lysates, coupled expression-secretion systems migh obviate a subsequent in vitro processing step to remove a fused protein. Available arere three yeast expression-secretion systems. Th se were: 1) yeast a factor (22), 1p employing yeast a-f actor promoter and preprosequence; 2) yeast invertase (lu) consisting of the invertase romoter and signal sequence; and 3) a hybrid, composed of the PGK promo er (25) and invertase signal (16).
Yeast Alpha-Factor Promoter Pre-Alpha Factor IGF-1 Plasmid Construction To obtain expression of IGF-1 using the a factor promoter and preprosequence, a plasmid constructed by Singn (22) was used. Plasmid P65 (Fig. 9) possesses sequences of the a-factor promoter, a-factor preprosequence, yeast 2 micron to inator, the yeast Trp 1 gene, as well as portions of the pSR322 plasmid. Due to the dearth of convenient restriction sites in the a-factor reprosequence, to insert the IGF-1 coding sequence, the identical -23 by EcoRI-EcoRI HuSynIGF-1-;~1 fragment that was ligated into pPdCY and pNCVsLE (as mentioned previously in bacterial construction) was used. This EcoRI-EcoRI fragment contained the collagenase recognition site P olive-Alanine-Glycine-Proline, and allowed for collagenase digestion hould IGF-1 be secreted as a fusion protein. The protein expressed in this construction (see Fig. 10) consists of the prepro a-factor pr tein fused to IGF-1.
To insert the "230 by EcoRI-Ec RI fragment, the plasmid P55 was partially digested in 1X EcoRI buf er with EcoRI, and then sized upon a 0.7 percent i~orizontal agarose gel The band corresponding to the linearized singularly restricted p asmid was excised, eluted from the gel, and phenol extracted, chlorof rm extracted 2X, and then ethanol precipitated. This DNA pellet was then taken up in 50 mil Tris-HC1 (pH 8) 13414~J1 and treated with bacterial alkali a phosphatase under conditions to ensure 100 percent dephosphorylat on of the 5' protruding ends.
Following this treatment, the pho phatase activity was removed by first adding EDTA to a concentration of 15 mid, then extracting the DNA with phenol 3X, chloroform extracting X, and ethanol precipitating the vector. This material then conta ned linearized P65 vector, digested ~dith EcoRI in either of two locat ons: one, either at the EcoRI site upstream of the a-factor promoter and preprosequence, or at another, at the EcoRI site just downstream of the a-factor promoter and preprosequence. The X230 by EcoR -EcoRI IGF-1 fragment was ligated into the vector. The desired location of insertion was at the EcoRI site just downstream from the n-factor prompter and preprosequence.
The ligation was carried out nder standard ligation conditions and the transf onnation i~osts were com etent E. coli 29~ prepared according to Dagert and Ehrlich (3). The tran formed cells were plated onto La-Amp-Agar plates. Several tran formants were miniscreened according to the method of Birnboim and Doly ( ), and plasmid DNA prepared as such was digested both SaII and HindIII in the appropriate Suffers. One of several clones which contained a lasmid with an "110 by EcoRI-HindIII
fragment was grown in large scale and its plasmid was purified. This plasmid, YEp9T a-factor EcoRI-Eco I IGF-1 (see Fig. 11), was used to transf orn competent yeast strain 'OB-12 (ate pep4) cells according to the Hitzeman modification (19) of Hinnen et al. (17) and Beggs et al.
28 (18) procedures. , Two such transformants, as well as a negative control transfo rnant (with no IGF-1 insertion in the plasmid), were grown in suspensio.~n as were those of the yeast ore-inver ase-IGF-1 plasmid transformations.
Supernates were tested for secret d IGF-1 activity, as measured by the radioimmune assay procedure of Fu lanetto et al. (23) as modified by Hintz et al. (24). Both supernat s of transformants having plasmids with IGF-1 inserts contained IGF-1 activity and the negative control sup2rnate did not. One of these transforma is was grown in large scale in a 10 liter fermenter and the supernate contained secreted IGF-1 activity at a 1 .i 4 1 4 ~ 'I
peak level of ~3~g/ml. The IGF-l~activity of the fe rnentation supernate was also demonstrated by a placen al membrane radioreceptor assay developed by Horner et al. (26).
Yeast Invertase Promoter Signal I~F-1 Plasmid Construction Based upon evidence of correct processing and secretion in yeast of proteins with heterologous signal sequences (16), the yeast invertase expression-secretion system becam of interest. Attempted first was expression of the yeast invertase signal protein fused to IGF-1 (Fig.
12), coupled with the processing nd secretion of IGF-1, using the invertase promoter as a starting ,point for transcription.
The yeast invertase signal co ing sequence was attached to the IGF-1 gene by the use of a NcoI-HindIII ("400 bp) fragment containing the initiation ATG colon and 5' end o the signal DNA sequence, and 4 DNA
fragments synthesized by standard~procedures (2):
5' AGCTTTCCTTTTCCTTTTGGCI 3' 3' AAGGAAAAGGAAAACCGp~CCAA 5' 5' TGGTTTTGCAGCCAAAATATC~GCAG 3' 3' AACGTCGGTTTTATAG CGTCCAG 5' The construction began with the isolation of the 90 by AvaII-BamHI
IGF-i left half fragment by AvaII digestion of a -730 by Pvul-BamHI
fragment isolated from PvuI-BamNI igested pBR322-I+uSynIGF-1.
After phosphorylation of all four synthetic DNA fragments using standard kination conditions, the our synthetic fragments were mixed with the AvaII-BamHI IGF-1 left half fragment and ligated using standard ligation conditions. Follo;ving in ctivation of the ligase by phenol and cnloroforn extraction 2X, the ethanol precipitated DNA pellet ',vas dissolved and digested with HindIII and BamHI in the appropriate buffers. Newly constructed HindIII-BamHI (ca. 140 bp) fragment was isolated and extracted from a 6 pe cent polyacrylamide gel. This material was then ligated into Hin III-BamHI digested pBR322 vector, 1~414~1 w hick had been first digested with ~IindIII, then BamHI in the appropriate buffers, followed by purification f the 4014 by vecto r fragment from a 5 percent gel.
The transformation host was competent c, coli 294 prepared by standard procedures (3) and the tr nsforned cells 4vere plated onto LB-Ampicillin agar plates. Several transformants were miniscreened by the 8irnboim-Doly procedure (4) and their plasmid DNAs digested with EcoRI and BamHI. Two plasmids containing a X167 by EcoRI-BamHI fragment (illustrating the insertion of a 1 0 by fragment into the HindIII and BamHI sites) were grown in large s ale and their plasmids prepared.
Using i~laxam-Gilbert sequencing tec niques (5), the entire 43 by HindIII-AvaII section of DNA :ras s quenced to confirm the correct chemical synthesis and construction. The correctly constructed plasmid was called pBR322-P-I-HuSynIGF HindIII-BamHI ("4154 bp).
To i nsert the ri ght hal f of th IGF-1 gene, thi s nevrly created plasmid was digested with BamHI-Sa I in the appropriate buffers and the larger fragment ("3879 bp) was pur'fied by gel fractionation. pSR322 HuSynIGF was digested with BamHI-S lI in the appropriate buffers and the 115 by BamHI-SalI fragment corresp riding to the right half of the IGF-1 gene was isolated by gel fractiona ion. This 115 by BamHI-Sall IGF-1 right half fragment was then ligat d into the BamHI-SaII digested pBR322-P-I-IGF-1 LH HindIII-BamHI ector using standard ligation conditions. Competent t. coli str in 294 prepared.according to Dagert and Ehrlich (3) were used as trams or;nation hosts and transformed cells were plated onto LB-Amp-Agar plate . Several transfo wnants were miniscreened using standard techni ues (4) and plasmid DiJA prepared~as such was digested with EcoRI and S lI in the appropriate buffers and those plasmids illustrating an ins rtion of the 3amHI-Sall fragment corresponding to the right half of IGF-1 were called p8R322 P-I-HuSynIGF-1 HindIII-SaII. One f the clones containing the pBR322 P-I-IGF-1 HindIII-SaII plasmid ;vas grown in large scale and the plasmid was isolated. This plasmid was th n digested with HindIII and SaII in the appropriate buffer to prepare 255 by HindIII-SaII fragmeni 1341t~g~
containing all of the IGF-1 gene nd the 3' portion of the yeast invertase signal coding sequence. This fragment of DNA was isolated by polyacrylamide gel fractionation nd prepared for ligation by standard techniques.
The 0 400 bp) NcoI-HindIII fragment containing the 5' end of the D~JA
sequence coding for the invertase signal as well as the yeast invertase promoter was created by NcoI and indIII digestion of plasmid YIpsp-LeIFA
(16) in the appropriate buffers. The YIpsp-LeIFA plasmid was first digested with NcoI to completion in the appropriate buffer, then phenol extracted, chloroform extracted 2 and ethanol precipitated. The linearized molecules were then to en up in 1X HindIII buffer and partially digested to generate th needed NcoI-HindIII (-400 bp) fragment which contains an internal HindII restriction site. This NcoI-HindIII
fragment was then isolated by gel (fractionation and prepared for ligation using standard techniques.
To provide for a vector, plas id pUCl2-YI (EcoRI-BamHi) (16) :vas digested with iJcoI and SaII in the appropriate buffers. After purification by gel fractionation, the -2.6 kup vector was eluted from the gel and prepared for ligation y standard techniques. To perform the final construction, a three-part ligation was arranged using standard ligation techniques. The DNA used in the ligation included the NcoI-SaII-digested pUGl2-YI (EcoRI-BamHI) (16), the -400 by NcoI-HindIII
and the "'255 by HindIII-SaII fragm nts. After ligation, the material was transformed into competent E. coli 294 cells prepared according to Dagert et al. (3). Transformed cells wer plated onto LB-Amp-Agar plates and several transformants were mi ni scr tined usi ng the procedure of Bii~ni~oim and Doly (4). Plasmid DNA prepare as such was digested with NcoI and SalI in the appropriate buffers an one of several clones containing plasmids exhibiting the insertion f a -625 by iJcoI-SaII DNA fragment was grown in large scale and its plasm~d eras purified.
As a final step, this plasmid bras linearized by digestion with SaII
in the appropriate buffer. SaII-E~oRI linker, prepared as mentioned 15414y1 above, and kinased under standard kination conditions, was ligated to the linearized vector to convert the S lI ends to EcoRI ends using standard ligation conditions. After ternin tion of the ligation reaction by addition of EDTA to 15 m,~, phenol xtraction, chloroform extraction 2X
and ethanol precipitation, the DNA pellet was dissolved in 1X EcoRI
buffer, and digested with EcoRI. he EcoRI digestion released a "1150 by EcoRI fragment which contained the yeast invertase promoter, yeast invertase signal coding sequence a d the IGF-1 coding sequence in one contiguous sequence. This materia was isolated as a 1150 by band from a 5 percent polyacrylamide slab ge after fractionation and prepared for ligation using standard procedures.
The yeast-E. coli shuttle vect r to receive this EcoRI fragment was prepared by EcoRI digestion of pla mid YEp9T (16) to linearize the vector, followed by treatment of the EcoRI termini with bacterial alkaline phosphatase using conditi ns recommended by the manufacturer to produce 100 percent dephosphorylation of the 5' protruding ends. The phosphatase reaction was terminate by addition of EDTA to 15 mM and the mixture phenol extracted 3X, chlor form extracted 2X, and then the ONA
was ethanol precipitated. After r dissolving the DNA pellet in 1X
ligation buffer, the vector was mi ed with the EcoRI 1150 by fragment and ligated under standard ligatio conditions. Competent E. coli 294 cells prepared according to Dagert et al. (3) ~,vere used as transformation hosts and the transformants were p ated onto LB-Amp-Agar plates. To determine the orientation of 'the insertion, several, transformants were miniscreened using the method 8irn oim and Doly (4) and plasmid DNAs purified as such were digested with BamHI in the appropriate buffer. One of several transformants possessin plasmids which produced a 1.3 kb BamHI-BamHI fragment upon BamHI digestion (as opposed to a 475 by fragment) was grown in large scale and its plasmid was purified. This plasmid, called P.I.IGF-1 EcoRI-EcoRI P.I. Promoter was used to transform competent yeast cells prepared ess ntially according to the methods of Hinnen, A., et al. (17), and Beggs, J.D. (18), but with the modifications of Hitzeman (19). The yeast strain 20B-12 (atrpl p?p4) was used and was obtained from the Yeast Genetics Stock Center. In this construction, the expression of IGF-1 begins with t anscription at the invertase promoter and terminates in the yeast 2 mic on sequence. The fusion protein expressed by this construction co sisted of the yeast invertase signal fused to the IGF-1 protein, the co bined molecular weight of which was 9954 Daltons. Another plasmid wi h the EcoRI fragment inserted in 'the reverse orientation was also used to transform competent yeast cells. In this construction, the IGF-1 was not provided with the yeast to rniinator.
Several transformants were picked and streaked on YN8-C.4A agar plates. Among these, three transfo woants were picked and inoculated into 10 ml of YN3-CAA grow-up medium, in shake flasks. A fourth culture was also started using a colony transfo reed with the same vector, but with the EcoRI fragment inserted into he vector in the reverse orientation.
After 15-20 hours gro~th at 30", the cultures were sampled (1 ml) and cleared of cells by spinning 5' in an eppendorf microfuge. Supernatants were taken off and assayed for secreted activi~y using the radioimmune assay procedure of Furlanetto et al. (23) as modified by Hintz et al.
(24). The supernates of the three transfo rnants demonstrated activities of 1.7 to 3.3 ng/ml of IGF-1 activ'ty and the negative control showed no activity. To deterrnine intracellu ar activity, the pellets from 1 ml of culture were washed 1X in 25 m~~l Tr's-HC1 (pH 7.6), 1 mM EDTA and then lysed by 3-4 minutes of vigorous v rtexing in 0.5 ml of the above Tris-EDTA solution ~vith 0.4 ml of lass beads.
Assay of the cell lysates demo strated IGF-1 activities of 1.5-2.8 ng/ml in the three IGF-1 secreting transformants and no activity in the negative control transformant. Th highest secretor of the three transformants was gro.vn i n a 5 1 i t r fermentati on and the secreted fGF-1 activity reached a peak of 74 ng/m~l of supernate.
Yeast PG~C Promoter Pre-Invertase I~F-1 Plasmid Construction One difficulty in the use of tie invertase promoter eras that it was subject to repression in the prese ce of glucose. Due to the incompatibility of glucose ~.vith hi h levels of transcription initiation i 1~ ~+14~~
at the invertase promoter, the PGK promoter :gas sought as an alternative promoter, glucose, being the mainstay carbon source of fermentation processes.
To begin construction of the PGK promoter P.I.I6F-1 construction, it was necessary to clone a fragment containing the entire invertase signal coding sequence. To do this, plasmid pLeIF-A-Invertase Signal (16) was digested with BgIII and then 3amHI in the appropriate buffers. This digestion released several fragments, one of which was a -GZ5 by l0 BgIII-BamHI fragment avhich was isolated from a 6 percent polyacr~flamide slab gel and prepared for ligation using standard techniques. To clone this fragment, the pUC8 vector (20) was chosen as a cloning vehicle.
pUCB plasmid was digested with BamHI in 1X BamHI buffer, treated with bacterial alkaline phosphatase to dephosphorylate the 5' termini, and then run onto and purified from a 5 percent polyacrylamide slab gel.
After standard preparation for ligation the BamHI digested vector was mixed with the above -625 by BgIII-BamHI fragment, and ligated under typical ligation conditions. The mixture was then transformed into 20 competent E, coli 29~ prepared by the Dagert et al. method (3) and the transformed culture plated onto LB-Amp-Agar plates. Several transfortnants were picked and miniscreened using the Birnboim and Doly (4) technique.
~liniscreen plasmid DNA was digested with EcoRI and an analytical gel of the digests illustrated two types of plasmids having EcoRI fragments 25 either "'260 by or 385 by in length. One clone containing a 260 by EcoRI fragment was grown i n 1 arge scal a and i is pl asmi d puri f i ed. Thi s plasmid was called pUC8 P.I. Promotor-Signal BgIII-3amHI.
A clone of this type ~:~as chosen because of the desired orientation of 30 the inserted 8glII-BamHI fragment. What was needed from this plasmid was an ~20 by EcoRI-HindIII fragment containing the ATU initiation colon and 5' end of the invertase signal coding sequence.
To construct the intact invertase signal coding D~yA sequence, 150 up 35 HindIII-BamHI fragment containing the 3' end of the signal sequence fused to the left hal f of the IGF-1 gene vas i sol ated f rom Hi ndI I I-BamHI
digestion of plasmid pBR322 P.I. IGF-LH HindIII-BamHI ("4154 bp).
Isolation Eras by polyacrylamide slab gel fractionation, and the D~JA band corresponding to the X150 by fragment was excised and prepared for ligation wing standard techniques.
To obtain the short ("20 bp) EcoRI-HindIII fragment, the plasmid pUC8 P.I. Promotor-Signal-BgIII-BamHI was digested with EcoRI in 1X EcoRI
buffer. This digestion released the "260 by EcoRI-EcoRI fragment v hick was isolated from a 6 percent polyacrylamide slab gel after fractionation of the digestion mixture. This 260 by fragment was then digested with HindIII in the appropriate buffer, causing the creation of two HindIII-EcoRI fragments, one X20 by and the other "240 by in length.
After complete digestion, the digestion was terminated by addition of ~5 EDTA to 15 mM and the entire mix phenol extracted, chloroform extracted 2X, and then ethanol precipitated.
A vector eras prepared by EcoRI-BamHI digestion of p3R322 (15) in the appropriate buffers followed by purification of the EcoRI-BamHI digested 20 vector from a 5 percent polyacrylamide slab gel. After areparation for ligation using standard techniques, the vector was mixed with the '150 by HindIII-BamHI fragment (3' end of invertase signal + Left Half IGF-1), and the two HindIII-EcoRI fragments (the "20 by fragment containing the 5' end of the invertase signal coding sequence), and the entire mixture 25 was ligated under standard ligation conditions. Competent E, coli 294 prepared according to Dagert and Ehrlich (3) were used as transformation hosts for the ligation, and the transformed cells plated onto LB-Amp-Agar plates. Several transform ants were miniscreened according to Bir'nboim and Doly (4) and the purified miniscreen DtJAs Lrere digested with EcoRI
30 and BamHI. One of several clones possessing an "170 by EcoRI-BamHI
fragment was grow n in large volume and its plasmid purified. This plasmid contained the complete yeast invertase signal coding sequence fused to the left half of IGF-1 and was called P.I. IGF-1 L.H. RI-BamHI.
35 The desired '170 by EcoRI-BamHI fragment was isolated from this '3 ~+1~~ 1 plasmid by digestion of the plasmid ~,yith EcoRI and BamHI in the appropriate Suffers followed by slab gel fractionation of the reaction mix. using standard techniques, the X170 by band of DNA vas prepared for ligation. To complete the construction, the right half of IGF-1 was isolated as an X120 by BamHI-EcoRI fragment from the plasmid P.I. IGF-1 EcoRI-EcoRI-P.I. Promoter by digestion :vith EcoRI and BamHI in the appropri ate buffers fol l owed by el uti on from a gel sl ice after polyacrylamide slab gel fractionation of the digestion mixturs. These tsvo fragments, the 170 by EcoRI-BamHI and the "120 by BamHI-EcoRI, were ., ~0 ligated together in vitro under standard ligation conditions, with both fragments present in roughly equimolar concentrations. This ligation mixture ;vas then terminated by the addition of ~DTA to "'15 m~fi followed by phenol extraction, chloroform extraction 2X, and ethanol precipitation.
The DNA pellet was then taken up in 1X EcoRI buffer and digested ~vith EcoRI. The digest was then run on a 6 percent polyacrylamide slab gei and the DNA band staining at -290 by (as oppo.-y~d to "3~.0 by and 2~0 bp) was excised and prepared for ligation using standard techniques. This "290 by EcoRI-EcoRI fragment contained zhe entire yeast invertase signal coding sequence fused to the complete IGF-1 coding sequence.
To express this protein, it was necessary to select a yeast vector with a promoter. The PG~C promoter of the plasmid YEpIPT Small (see Fig.
13) was used. YEpIPT Small :vas constructed as a derivative of YEpIPT
(21) by CIaI and PvuII digestion of YEpIPT in the appropriate buffers.
The CIaI 5' protruding end was converted to a blun~ end by use of DNA
polymerasz I (Kleno'r~) under conditions recommended by the vendor. After blunting the CIaI protruding ends, the blunt ends CIaI and PvuII) of the linearized vector were fused using T4 DNA ligase under standard Tigation conditions. The resultant YEpIPT small vector ~~uas 'S.9 kbp in size (or ~2~~ kbp smaller than YEpIPT). Just as YEpIPT, YEpIPT small possesses the 2 micron origin and terminator, the PGK promoter, the TRP1 gene, and sequences from p8R322, including the ~-lactamase gene.
YEpIPT Small was employed as a vector by insertion of the 290 by EcoRI fragment into the unique EcoRI site of the plasmid. EcoRI
1541~+~~
linearized YEpIPT Small vector was prepared by Eco~tI digestion of YEpIPT
small followed by bacterial alkaline phosphatase (BAP) treatment (to prevent relegation of the complementary termini). The BAP was removed by phenol extraction 3X, chloroform extraction 2X, and ethanol precipitation. Under standard legation conditions, the -290 by EcoRI
' fragment was legated into the vector.
Competent E. coli 294 prepared according to Dagert and Ehrlich (3) overe used as transformation hosts and the transformed culture was plated onto LB-Amp-Agar plates. Several transformants were miniscreened by the Birnboim and Doly procedure (4) and miniscreen plasmid D~IAs were digested with HindIII in the appropriate buffer to determine the orientation of the insert. One of several transformants possessing a plasmid with a 400 by HindIII fragment was grown in large scale and its plasmid was ~5 purified. This plasmid was called YEpIPT Small P.I. IGF-1 PGK promoter (see r=ig. 14) and vas used to transform compe~snt yeast strain 208-12 (ATCC 20625) (atr~ pep4) cells employing the Hitzeman modification (19) of Hinnen et al. (17), and 8eggs et al. (18) procedures.
20 Several yeast transfo rnants were grown in suspension in identical fashion as were those of the P.I. IGF-1 EcoRI-EcoRI P.I. promoter plasmid transformation and supernates were measured for activity determined by a radioimmune assay method of Furlanetto et al. (23) as modified by Hintz et al. (24). Shake flask supernates of three transformants contained 25 activities ranging from 38 to 53 ng/ml of supernate. Similarly, one of these transformants was selected and grown in larger scale, utilizing a liter fermenter and the secreted IGF-1 activity in the supernate reached a peak of 780 ng/ml. This fermentation supernate was also-subj~cted to a radioreceptor assay (26) and was demonstrated to contain 30 IGF-1 activity.
yature Human IGF Production To construct a D;JA sequence coding for the a-factor pre-pro protein 35 fused to the D~JA sequence coding for mature IGF-I, an iH-13 in vitro 1.r ~~~t~ 'i mutagenesis technique evas employed. (See Regin et al., Proc. Acad.
Science (USA) 75, 4208; iiutchinson, et al., Journal Biological Chem. 253, u551; Gilliam, _et al., Gene 8, 81 and 99; Gillam, et al., Nucleic Acids Research 5, 2973; Adelman, et al., DNA (June, 1983).) To construct the ~1-13 plasmid, the plasmid Ycp9T a-factor ECoRI-ECoRI
IGF-I (Figure 16) was digested with Bgl 11 and SaII and the ca. 1.5 Kbp fragment containing the a-factor promotor-signal fused to IGF-I !vas isolated by polyacrylamide gel electrophoresis. This fragment was then l0 ligated under standard ligation conditions to an t~IP-8 (BRL) vector digested :vith 3amN1 and Sal I, and treated ~rith bacterial alkaline phosphatase. This ligation mix was then transformed into competent J~~101 cells prepared according to the :method of Dagart and chrlich (3). These transformants were then mixed with non-cornpetent JM101 cells grown to log phase, mixed with top agar and plated onto LB agar plates. Several clear plaques were picked and sequenced using the ~1~13 dideoxy sequencing technigue to confirm the presence of an insertion into the Sall-BamHl sites of the vector.
To perf orr~ the del eti on accordi ng to the r~eti~od above, a si ngl a strand of DNA of the sequence 5' AGAGTTTCCGGACCT CTT TTATCCAAAG 3' was chemically synthesized by standard methods (2) and used to delete the DNA sequence 5' GAGGCTGAAGCTCTAGAATTCCCTGCC 3' 3' CTCCGACTTCGAGATCTTAAGGGACGG 5' dust preceding the IGF-1 coding sequence of the a-factor promotor/signal IGF-I fusion sequence. This construction was then isolated as a replicative fore, using a large scale plasmid preparation procedure from a J~d101 cell culture inoculated ~:vith this plasmid containing the deletion.
The isolated replicative fore (10 mg) was then digested with SaII.
' 1 ~~~+'14~~
Then phenol-chlorogform extracted and then ethanol precipitated and prepared for ligation. To this replicative fore was ligated Sal I-ECoRl linkers. After ligation and inactivation of the ligase by phenol, chloroform extraction follo~red by ethanol precipitation, the material :vas digested with -50 U ECoRl enzyme under standard conditions and then run onto a 'v percent polyacrylamide gel. The ca. 1.5 kbp RI-ECoRI fragment released was isolated fro;n the gel and prepared for ligation using standard conditions.
l0 Yeast vector was prepared by digestion of 10 mg YEP9T plasmid ;vith 50 units of ECoRI followed by treat;nent with bacterial alkaline phosphatase. The digestion was thin repeatedly phenol-c%~lorofor~n extracted and then ethanol precipitated and prepared for ligation.
~5 The ca. 1.5 kbp tCoRI-ECoRI fragment containing the deletion was then ligated to. the ECoRI-ECORI YEP9T vector and tlia ligation mix :vas then transf erred into competent 294 cells prepared according to the method of Dagert and Erhlich (3) and miniscreened using the method of Birnboin and Doly (4). DNA prepared :vas screened by degestion with ECoRI and those 20 DNAs illustrating an insertion of the ca. 1.5 kbp fragment were used to transform competent yeast strain 203-12 (ATCC 20;126) according to the modification of Hitzernan (19) of the Hinner, et al., (17), and Beggs, et al., (18) procedures.
25 Transformants were then grown in shaker flasks .and supernates assayed and shown to have IGF-I activity by the radioimmune assay procedure of Furlanetto, et al., (23) as modified by Hintz, et al., (24).
One of these clones were grown in large scale in a 10-liter fermentor 30 and IGF-I purified from the supernatant of this fermentation. This material was then subjected to amino terminal protein sequencing and shown to be mature IGF-I protein.
Human EGF is prepared in accordance with invention following 35 analogous procedures as those described above.
~3 w 1~~+1~t~1 Construction, Expression, and Secretion of Human EGF
In a fashion similar to IGF-1, double stranded DNA (Fig. 15) synthesized either by chemical means or through polymerization reactions was assembled to form a mature EGF coding sequence, with a colon coding for methionine (ATG) just preceding the amino-terminal asparagine found in the mature protein, and a colon (GTC) substituting valine for methionine at residue number 21 from the amino-terminal asparagine. This construction was then attached at the 5' end to an additional coding sequence, which when expressed in yeast or bacteria produced a fusion protein. This fusion protein was then susceptible to CNDr cleavage at the methionine to release the valine substituted human EGF molecule.
To secrete the mature farm of EGF from yeast, the above sequence ~5 coding for the mature protein was attached to the a-f actor promoter/prepro sequence, the colon coding fovaline at residue nurnbe r 21 was replaced by ATG, and the appropriate deletion was made to bring the coding sequence for mature EGF adjacent to the a-factor signal coding sequence (Figure 15). This construction was then inserted into the yeast vector Yep9T and transformed into yeast. Transformants produced as such expressed and secreted mature ouman EGF. In addition, the sequence coding for mature EGF vas attached to the preinvertase signal sequence (Figure 17) and this construction, when inserted into the yeast vector YepIPT small containing the PGK promoter, and transformed into yeast, resulted in the expression and secretion of human EGF.
Construction, Expression, and Secretion of fiurnan IGF-II
A double stranded ONA sequence coding for mature IGF-II was constructed from a combination of synthetic and natural DNA sequences (Figure 18). This coding sequence, which did not contain an internal methionine, was attached to the TrpE leader protein coding sequence and was expressed as a fusion protein. Mature IGF-II was chemically cleaved from the purified fusion product by the action of C~~l3r upon a methionine residue preceding the first residue (alanine) of the mature protein.
4~
. _ ~ i~41~~~n The IGF-II coding sequence was also attached to the a-factor promoter/prepro sequence and after the appropriate deletion was made to bring the 3' end of the a-factor signal coding sequence adjacent to the 5' end of mature IGF-II coding sequence, the construction ivas inserted into the Yep9T vector and transformed into yeast. Resultant transf onnants expressed and secreted mature human IGF-II. In the same manner, the sequence coding for mature IGF-II was attached to the preinverzase coding sequence. The resultant construction was inserted into YeplPT small and transforned into yeast. Transformants produced as IO such expressed and secreted ;nature human IGF-II.
Pharnaceutical compositions Th2 compounds of the present invention can be formulated according to i5 known methods to prepare pharmaceutically useful compositions, whereby the human IGF and human EGF or products hereof are combinzd in admixture with a pharmaceutically acceptable carrier vehicle. Suitable vehicles and their fo rnulation, inclusive of other hurnan proteins, e.g. human serum albumin are described, for example, in Remington's Pharmaceutical 20 Sci ences by F. W. f~larti n, whi ch i s hereby i ncorporated by reference.
Such compositions will contain an effective amount of the protein hereof together with a suitable amount of vehicle in order to prepare pharmaceutically acceptable compositions suitable for effective administration.
Notwithstanding that reference has been made to particular preferred embodiments of the present invention, it ~Nill be understood that the present invention is not to be construed as limited to such rather to the lawful scope of the appended claims.
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