Movatterモバイル変換


[0]ホーム

URL:


Skip to main content
Springer Nature Link
Log in

Detecting strictly detailed balanced subnetworks in open chemical reaction networks

  • Papers
  • Published:
Journal of Mathematical Chemistry Aims and scope Submit manuscript

Abstract

The notion “strictly detailed balanced subnetwork” is introduced, for chemical reaction networks which are open and spatially homogeneous, to refer to any set of reactions the net rates of which vanish in each asymptotically stable steady state, regardless of the kinetic parameters of any reaction in the whole network. Necessary and sufficient conditions for sets of reactions to be strictly detailed balanced subnetworks are derived. An algorithm for detecting all reactions belonging to such subnetworks in systems of arbitrary stoichiometry is given, justified and applied to a realistic biochemical system. A computer program in PASCAL, performing the essential parts of this algorithm, is added.

This is a preview of subscription content,log in via an institution to check access.

Access this article

Log in via an institution

Subscribe and save

Springer+
from ¥17,985 /Month
  • Starting from 10 chapters or articles per month
  • Access and download chapters and articles from more than 300k books and 2,500 journals
  • Cancel anytime
View plans

Buy Now

Price includes VAT (Japan)

Instant access to the full article PDF.

Similar content being viewed by others

Explore related subjects

Discover the latest articles, books and news in related subjects, suggested using machine learning.

References

  1. R. Wegscheider, Z. Phys. Chemie (Leipzig) 39 (1902)257,

    Google Scholar 

  2. G.N. Lewis, Proc. Natl. Acad. Sci. 11 (1925)179.

    Google Scholar 

  3. J.Z. Heaton, Bull. Math. Biophys. 15 (1953)121.

    Google Scholar 

  4. J. Higgins, Ind. Eng. Chem. 59 (1967)18.

    Google Scholar 

  5. S. Schuster and R. Schuster, J. Math. Chem. 3 (1989)25.

    Google Scholar 

  6. F. Horn and R. Jackson, Arch. Rational Mech. Anal. 47 (1972)81.

    Google Scholar 

  7. A.I. Volpert and S.I. Khudyayev,Analysis over Classes of Discontinuous Functions and the Equations of Mathematical Physics (Nauka, Moscow, 1975), in Russian.

    Google Scholar 

  8. M. Schauer and R. Heinrich, Math. Biosci. 65 (1983)155.

    Google Scholar 

  9. J.D. Rawn,Biochemistry (Harper and Row, New York, 1983).

    Google Scholar 

  10. H.G. Hers and L. Hue, Ann. Rev. Biochem. 52 (1983)617.

    PubMed  Google Scholar 

  11. B.L. Clarke, in:Advances in Chemical Physics, Vol. 43, ed. I. Prigogine and S.A. Rice (Wiley, New York, 1980), p. 1.

    Google Scholar 

  12. R. Schuster, H.G. Holzhütter and G. Jacobasch, BioSystems 22 (1988)19.

    PubMed  Google Scholar 

  13. P.L. Corio, J. Phys. Chem. 88 (1984)1825.

    Google Scholar 

  14. C. Reder, J. Theor. Biol. 135 (1988)175.

    PubMed  Google Scholar 

  15. H. Kacser and J.A. Bums, Symp. Soc. Exp. Biol. 27 (1973)65.

    PubMed  Google Scholar 

  16. R. Heinrich and T.A. Rapoport, Eur. J. Biochem. 42 (1974)89.

    PubMed  Google Scholar 

  17. C.W. Groetsch and J.T. King,Matrix Methods and Applications (Prentice-Hall, Englewood Cliffs, 1988).

    Google Scholar 

  18. R.A. Beaumont and R.W. Ball,Introduction to Modern Algebra and Matrix Theory (Constable, London, 1954).

    Google Scholar 

  19. J.R. Magnus and H. Neudecker,Matrix Differential Calculus Wiley, Chichester, 1988).

    Google Scholar 

  20. R. Zurmühl,Matrizen und ihre technischen Anwendungen (Springer, Berlin, 1964).

    Google Scholar 

  21. M. Feinberg, Arch. Rational Mech. Anal. 49 (1972)187.

    Google Scholar 

  22. F. Horn, Proc. Roy. Soc. London Ser. A 334(1973)299; 313; 331.

    Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Sektion Biologie, Bereich Biophysik, Humboldt-Universität zu Berlin, Invalidenstrasse 42, 1040, Berlin, Germany

    Stefan Schuster

  2. Institut für Biochemie, Humboldt-Universität zu Berlin, Hessische Strasse 3-4, 1040, Berlin, Germany

    Ronny Schuster

Authors
  1. Stefan Schuster
  2. Ronny Schuster

Rights and permissions

About this article

Access this article

Subscribe and save

Springer+
from ¥17,985 /Month
  • Starting from 10 chapters or articles per month
  • Access and download chapters and articles from more than 300k books and 2,500 journals
  • Cancel anytime
View plans

Buy Now

Price includes VAT (Japan)

Instant access to the full article PDF.

Advertisement


[8]ページ先頭

©2009-2025 Movatter.jp