For using the igraph C library
Some algorithms in igraph, such as sampling from random graph models,require random number generators (RNGs). igraph includes a flexibleRNG framework that allows hooking up arbitrary random number generators,and comes with several ready-to-use generators. This framework is usedin igraph's high-level interfaces to integrate with the host language'sown RNG.
igraph_rng_t *igraph_rng_default(void);
Returns:
A pointer to the default random number generator. |
See also:
void igraph_rng_set_default(igraph_rng_t *rng);
This functioncopies the internal structure of the givenigraph_rng_tobject to igraph's internal default RNG structure. The structure itselfcontains two pointers only, one to the "methods" of the RNG and one to thememory buffer holding the internal state of the RNG. This means that if youkeep on generating random numbers from the RNG after setting it as thedefault, it will affect the state of the default RNG as well because the twoshare the same state pointer. However, donot expectigraph_rng_default() to return the same pointer as the one you passedin here - the state is shared, but the entire structure is not.
Arguments:
| The random number generator to use as default from now on. Calling |
Time complexity: O(1).
igraph_rng_init — Initializes a random number generator.igraph_rng_destroy — Deallocates memory associated with a random number generator.igraph_rng_seed — Seeds a random number generator.igraph_rng_bits — The number of random bits that a random number generator can produces in a single round.igraph_rng_max — The maximum possible integer for a random number generator.igraph_rng_name — The type of a random number generator.igraph_error_t igraph_rng_init(igraph_rng_t *rng, const igraph_rng_type_t *type);
This function allocates memory for a random number generator, withthe given type, and sets its seed to the default.
Arguments:
| Pointer to an uninitialized RNG. |
| The type of the RNG, such as |
Returns:
Error code. |
void igraph_rng_destroy(igraph_rng_t *rng);
Arguments:
| The RNG to destroy. Do not destroy an RNG that is used as the default igraph RNG. |
Time complexity: O(1).
igraph_error_t igraph_rng_seed(igraph_rng_t *rng, igraph_uint_t seed);
Arguments:
| The RNG. |
| The new seed. |
Returns:
Error code. |
Time complexity: usually O(1), but may depend on the type of theRNG.
igraph_integer_t igraph_rng_bits(const igraph_rng_t* rng);
Arguments:
| The RNG. |
Returns:
The number of random bits that can be generated in a single round with the RNG. |
Time complexity: O(1).
igraph_uint_t igraph_rng_max(const igraph_rng_t *rng);
Note that this number is only for informational purposes; it returns themaximum possible integer that can be generated with the RNG with a singlecall to its internals. It is derived directly from the number of randombits that the RNG can generate in a single round. When this is smallerthan what would be needed by other RNG functions likeigraph_rng_get_integer(),igraph will call the RNG multiple times to generate more random bits.
Arguments:
| The RNG. |
Returns:
The largest possible integer that can be generated in a single round with the RNG. |
Time complexity: O(1).
igraph_rng_get_bool — Generate a random boolean.igraph_rng_get_integer — Generate an integer random number from an interval.igraph_rng_get_unif01 — Samples uniformly from the unit interval.igraph_rng_get_unif — Samples real numbers from a given interval.igraph_rng_get_normal — Samples from a normal distribution.igraph_rng_get_exp — Samples from an exponential distribution.igraph_rng_get_gamma — Samples from a gamma distribution.igraph_rng_get_binom — Samples from a binomial distribution.igraph_rng_get_geom — Samples from a geometric distribution.igraph_rng_get_pois — Samples from a Poisson distribution.igraph_bool_t igraph_rng_get_bool(igraph_rng_t *rng);
Use this function only when a single random boolean, i.e. a single bitis needed at a time. It is not efficient for generating multiple bits.
Arguments:
| Pointer to the RNG to use for the generation. Use |
Returns:
The generated bit, as a truth value. |
igraph_integer_t igraph_rng_get_integer( igraph_rng_t *rng, igraph_integer_t l, igraph_integer_t h);
Generate uniformly distributed integers from the interval[l, h].
Arguments:
| Pointer to the RNG to use for the generation. Use |
| Lower limit, inclusive, it can be negative as well. |
| Upper limit, inclusive, it can be negative as well, but it must be at least |
Returns:
The generated random integer. |
Time complexity: O(log2(h-l+1) / bits) where bits is the value ofigraph_rng_bits(rng).
igraph_real_t igraph_rng_get_unif01(igraph_rng_t *rng);
Generates uniformly distributed real numbers from the[0, 1)half-open interval.
Arguments:
| Pointer to the RNG to use. Use |
Returns:
The generated uniformly distributed random number. |
Time complexity: depends on the type of the RNG.
igraph_real_t igraph_rng_get_unif(igraph_rng_t *rng, igraph_real_t l, igraph_real_t h);
Generates uniformly distributed real numbers from the[l, h)half-open interval.
Arguments:
| Pointer to the RNG to use. Use |
| The lower bound, it can be negative. |
| The upper bound, it can be negative, but it has to be larger than the lower bound. |
Returns:
The generated uniformly distributed random number. |
Time complexity: depends on the type of the RNG.
igraph_real_t igraph_rng_get_normal(igraph_rng_t *rng, igraph_real_t m, igraph_real_t s);
Generates random variates from a normal distribution with probabilitydensity
exp( -(x - m)^2 / (2 s^2) ).
Arguments:
| Pointer to the RNG to use. Use |
| The mean. |
| The standard deviation. |
Returns:
The generated normally distributed random number. |
Time complexity: depends on the type of the RNG.
igraph_real_t igraph_rng_get_exp(igraph_rng_t *rng, igraph_real_t rate);
Generates random variates from an exponential distribution with probabilitydensity proportional to
exp(-rate x).
Arguments:
| Pointer to the RNG to use. Use |
| Rate parameter. |
Returns:
The generated sample. |
Time complexity: depends on the RNG.
igraph_real_t igraph_rng_get_gamma(igraph_rng_t *rng, igraph_real_t shape, igraph_real_t scale);
Generates random variates from a gamma distribution with probabilitydensity proportional to
x^(shape-1) exp(-x / scale).
Arguments:
| Pointer to the RNG to use. Use |
| Shape parameter. |
| Scale parameter. |
Returns:
The generated sample. |
Time complexity: depends on the RNG.
igraph_real_t igraph_rng_get_binom(igraph_rng_t *rng, igraph_integer_t n, igraph_real_t p);
Generates random variates from a binomial distribution. The numberk is generatedwith probability
(n \choose k) p^k (1-p)^(n-k),k = 0, 1, ..., n.
Arguments:
| Pointer to the RNG to use. Use |
| Number of observations. |
| Probability of an event. |
Returns:
The generated binomially distributed random number. |
Time complexity: depends on the RNG.
igraph_real_t igraph_rng_get_geom(igraph_rng_t *rng, igraph_real_t p);
Generates random variates from a geometric distribution. The numberk isgenerated with probability
(1 - p)^k p,k = 0, 1, 2, ....
Arguments:
| Pointer to the RNG to use. Use |
| The probability of success in each trial. Must be larger than zero and smaller or equal to 1. |
Returns:
The generated geometrically distributed random number. |
Time complexity: depends on the RNG.
igraph_real_t igraph_rng_get_pois(igraph_rng_t *rng, igraph_real_t rate);
Generates random variates from a Poisson distribution. The numberk is generatedwith probability
rate^k * exp(-rate) / k!,k = 0, 1, 2, ....
Arguments:
| Pointer to the RNG to use. Use |
| The rate parameter of the Poisson distribution. Must not be negative. |
Returns:
The generated geometrically distributed random number. |
Time complexity: depends on the RNG.
By default igraph uses the MT19937 generator. Prior to igraph version0.6, the generator supplied by the standard C library was used. Thismeans the GLIBC2 generator on GNU libc 2 systems, and maybe the BSD RANDgenerator on others. The RAND generator was removed due to poor statisticalproperties in version 0.10. The PCG32 generator was added in version 0.10.
const igraph_rng_type_t igraph_rngtype_mt19937 = { /* name= */ "MT19937", /* bits= */ 32, /* init= */ igraph_rng_mt19937_init, /* destroy= */ igraph_rng_mt19937_destroy, /* seed= */ igraph_rng_mt19937_seed, /* get= */ igraph_rng_mt19937_get, /* get_int= */ NULL, /* get_real= */ NULL, /* get_norm= */ NULL, /* get_geom= */ NULL, /* get_binom= */ NULL, /* get_exp= */ NULL, /* get_gamma= */ NULL, /* get_pois= */ NULL};The MT19937 generator of Makoto Matsumoto and Takuji Nishimura is avariant of the twisted generalized feedback shift-registeralgorithm, and is known as the “Mersenne Twister” generator. It hasa Mersenne prime period of 2^19937 - 1 (about 10^6000) and isequi-distributed in 623 dimensions. It has passed the diehardstatistical tests. It uses 624 words of state per generator and iscomparable in speed to the other generators. The original generatorused a default seed of 4357 and choosings equal to zero inigraph_rng_mt19937_seed() reproduces this. Later versions switched to5489 as the default seed, you can choose this explicitly viaigraph_rng_seed() instead if you require it.
For more information see,Makoto Matsumoto and Takuji Nishimura, “Mersenne Twister: A623-dimensionally equidistributed uniform pseudorandom numbergenerator”. ACM Transactions on Modeling and Computer Simulation,Vol. 8, No. 1 (Jan. 1998), Pages 3–30
The generatorigraph_rngtype_mt19937 uses the second revision of theseeding procedure published by the two authors above in 2002. Theoriginal seeding procedures could cause spurious artifacts for someseed values.
This generator was ported from the GNU Scientific Library.
const igraph_rng_type_t igraph_rngtype_glibc2 = { /* name= */ "LIBC", /* bits= */ 31, /* init= */ igraph_rng_glibc2_init, /* destroy= */ igraph_rng_glibc2_destroy, /* seed= */ igraph_rng_glibc2_seed, /* get= */ igraph_rng_glibc2_get, /* get_int= */ NULL, /* get_real= */ NULL, /* get_norm= */ NULL, /* get_geom= */ NULL, /* get_binom= */ NULL, /* get_exp= */ NULL, /* get_gamma= */ NULL, /* get_pois= */ NULL};This is a linear feedback shift register generator with a 128-bytebuffer. This generator was the default prior to igraph version 0.6,at least on systems relying on GNU libc.This generator was ported from the GNU Scientific Library. It is areimplementation and does not call the system glibc generator.
const igraph_rng_type_t igraph_rngtype_pcg32 = { /* name= */ "PCG32", /* bits= */ 32, /* init= */ igraph_rng_pcg32_init, /* destroy= */ igraph_rng_pcg32_destroy, /* seed= */ igraph_rng_pcg32_seed, /* get= */ igraph_rng_pcg32_get, /* get_int= */ NULL, /* get_real= */ NULL, /* get_norm= */ NULL, /* get_geom= */ NULL, /* get_binom= */ NULL, /* get_exp= */ NULL, /* get_gamma= */ NULL, /* get_pois= */ NULL};This is an implementation of the PCG random number generator; seehttps://www.pcg-random.org for more details. This implementation returns32 random bits in a single iteration.
The generator was ported from the original source code published by theauthors athttps://github.com/imneme/pcg-c.
const igraph_rng_type_t igraph_rngtype_pcg64 = { /* name= */ "PCG64", /* bits= */ 64, /* init= */ igraph_rng_pcg64_init, /* destroy= */ igraph_rng_pcg64_destroy, /* seed= */ igraph_rng_pcg64_seed, /* get= */ igraph_rng_pcg64_get, /* get_int= */ NULL, /* get_real= */ NULL, /* get_norm= */ NULL, /* get_geom= */ NULL, /* get_binom= */ NULL, /* get_exp= */ NULL, /* get_gamma= */ NULL, /* get_pois= */ NULL};This is an implementation of the PCG random number generator; seehttps://www.pcg-random.org for more details. This implementation returns64 random bits in a single iteration. It is only available on 64-bit plaformswith compilers that provide the __uint128_t type.
PCG64 typically provides better performance than PCG32 when sampling floatingpoint numbers or very large integers, as it can provide twice as many randombits in a single generation round.
The generator was ported from the original source code published by theauthors athttps://github.com/imneme/pcg-c.
If the user does not use any of the RNG functions explicitly, but callssome of the randomized igraph functions, then a default RNG is setup the first time an igraph function needs random numbers. Theseed of this RNG is the output of thetime(0) functioncall, using thetime function from the standard Clibrary. This ensures that igraph creates a different random graph,each time the C program is called.
The created default generator is stored internally and can bequeried with theigraph_rng_default() function.
If reproducible results are needed, then the user should set theseed of the default random number generator explicitly, using theigraph_rng_seed() function on the default generator,igraph_rng_default(). When setting the seed to the same number,igraph generates exactly the same random graph (or series of randomgraphs).
By default igraph uses theigraph_rng_default() random numbergenerator. This can be changed any time by callingigraph_rng_set_default(), with an already initialized random numbergenerator. Note that the old (replaced) generator is notdestroyed, so no memory is deallocated.
igraph also provides functions to set up multiple random numbergenerators, using theigraph_rng_init() function, and thengenerating random numbers from them, e.g. withigraph_rng_get_integer()and/origraph_rng_get_unif() calls.
Note that initializing a new random number generator isindependent of the generator that the igraph functions themselvesuse. If you want to replace that, then please useigraph_rng_set_default().
Example 8.1. Fileexamples/simple/random_seed.c
#include <igraph.h>intmain(void) { igraph_t g1, g2; igraph_bool_t iso;/* Seed the default random number generator and create a random graph. */igraph_rng_seed(igraph_rng_default(), 1122);igraph_erdos_renyi_game_gnp(&g1, 100, 3.0 / 100,/*directed=*/ 0,/*loops=*/ 0);/* Seed the generator with the same seed again, * and create a graph with the same method. */igraph_rng_seed(igraph_rng_default(), 1122);igraph_erdos_renyi_game_gnp(&g2, 100, 3.0 / 100,/*directed=*/ 0,/*loops=*/ 0);/* The two graphs will be identical. */igraph_is_same_graph(&g1, &g2, &iso);if (!iso) {return 1; }/* Destroy no longer needed data structures. */igraph_destroy(&g2);igraph_destroy(&g1);return 0;}
| ← Chapter 7. Data structure library: vector, matrix, other data types | Chapter 9. Graph generators → |