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A model species for agricultural pest genomics : the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

Sean D Schoville,Yolanda H Chen,Martin N Andersson,Joshua B Benoit,Anita Bhandari,Julia H Bowsher,Kristian Brevik,Kaat Cappelle(UGent),Mei-Ju M Chen,Anna K Childers, et al.
(2018)SCIENTIFIC REPORTS.8.
Author
Organization
Abstract
The Colorado potato beetle is one of the most challenging agricultural pests to manage. It has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable climates during its global invasion, and, notably, to rapidly evolve insecticide resistance. To examine evidence of rapid evolutionary change, and to understand the genetic basis of herbivory and insecticide resistance, we tested for structural and functional genomic changes relative to other arthropod species using genome sequencing, transcriptomics, and community annotation. Two factors that might facilitate rapid evolutionary change include transposable elements, which comprise at least 17% of the genome and are rapidly evolving compared to other Coleoptera, and high levels of nucleotide diversity in rapidly growing pest populations. Adaptations to plant feeding are evident in gene expansions and differential expression of digestive enzymes in gut tissues, as well as expansions of gustatory receptors for bitter tasting. Surprisingly, the suite of genes involved in insecticide resistance is similar to other beetles. Finally, duplications in the RNAi pathway might explain why Leptinotarsa decemlineata has high sensitivity to dsRNA. The L. decemlineata genome provides opportunities to investigate a broad range of phenotypes and to develop sustainable methods to control this widely successful pest.
Keywords
S-TRANSFERASE GENES,RNA-INTERFERENCE,INSECTICIDE RESISTANCE,TRANSPOSABLE ELEMENTS,DROSOPHILA-MELANOGASTER,GEOGRAPHIC POPULATIONS,PROTEINASE-INHIBITORS,TRIBOLIUM-CASTANEUM,CAENORHABDITIS-ELEGANS,CYSTEINE PROTEINASES

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Citation

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MLA
Schoville, Sean D., et al. “A Model Species for Agricultural Pest Genomics : The Genome of the Colorado Potato Beetle, Leptinotarsa Decemlineata (Coleoptera: Chrysomelidae).”SCIENTIFIC REPORTS, vol. 8, 2018, doi:10.1038/s41598-018-20154-1.
APA
Schoville, S. D., Chen, Y. H., Andersson, M. N., Benoit, J. B., Bhandari, A., Bowsher, J. H., … Richards, S. (2018). A model species for agricultural pest genomics : the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).SCIENTIFIC REPORTS,8. https://doi.org/10.1038/s41598-018-20154-1
Chicago author-date
Schoville, Sean D, Yolanda H Chen, Martin N Andersson, Joshua B Benoit, Anita Bhandari, Julia H Bowsher, Kristian Brevik, et al. 2018. “A Model Species for Agricultural Pest Genomics : The Genome of the Colorado Potato Beetle, Leptinotarsa Decemlineata (Coleoptera: Chrysomelidae).”SCIENTIFIC REPORTS 8. https://doi.org/10.1038/s41598-018-20154-1.
Chicago author-date (all authors)
Schoville, Sean D, Yolanda H Chen, Martin N Andersson, Joshua B Benoit, Anita Bhandari, Julia H Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju M Chen, Anna K Childers, Christopher Childers, Olivier Christiaens, Justin Clements, Elise M Didion, Elena N Elpidina, Patamarerk Engsontia, Markus Friedrich, Inmaculada García-Robles, Richard A Gibbs, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Grynberg, Bernard Henrissat, Emily C Jennings, Jeffery W Jones, Megha Kalsi, Sher A Khan, Abhishek Kumar, Fei Li, Vincent Lombard, Xingzhou Ma, Alexander Martynov, Nicholas J Miller, Robert F Mitchell, Monica Munoz-Torres, Anna Muszewska, Brenda Oppert, Subba Reddy Palli, Kristen A Panfilio, Yannick Pauchet, Lindsey C Perkin, Marko Petek, Monica F Poelchau, Éric Record, Joseph P Rinehart, Hugh M Robertson, Andrew J Rosendale, Victor M Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Gregg WC Thomas, Alex S Torson, Iris M Vargas Jentzsch, Matthew T Weirauch, Ashley D Yates, George D Yocum, June-Sun Yoon, and Stephen Richards. 2018. “A Model Species for Agricultural Pest Genomics : The Genome of the Colorado Potato Beetle, Leptinotarsa Decemlineata (Coleoptera: Chrysomelidae).”SCIENTIFIC REPORTS 8. doi:10.1038/s41598-018-20154-1.
Vancouver
1.
Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, et al. A model species for agricultural pest genomics : the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). SCIENTIFIC REPORTS. 2018;8.
IEEE
[1]
S. D. Schovilleet al., “A model species for agricultural pest genomics : the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae),”SCIENTIFIC REPORTS, vol. 8, 2018.
@article{8552281,  abstract     = {{The Colorado potato beetle is one of the most challenging agricultural pests to manage. It has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable climates during its global invasion, and, notably, to rapidly evolve insecticide resistance. To examine evidence of rapid evolutionary change, and to understand the genetic basis of herbivory and insecticide resistance, we tested for structural and functional genomic changes relative to other arthropod species using genome sequencing, transcriptomics, and community annotation. Two factors that might facilitate rapid evolutionary change include transposable elements, which comprise at least 17% of the genome and are rapidly evolving compared to other Coleoptera, and high levels of nucleotide diversity in rapidly growing pest populations. Adaptations to plant feeding are evident in gene expansions and differential expression of digestive enzymes in gut tissues, as well as expansions of gustatory receptors for bitter tasting. Surprisingly, the suite of genes involved in insecticide resistance is similar to other beetles. Finally, duplications in the RNAi pathway might explain why Leptinotarsa decemlineata has high sensitivity to dsRNA. The L. decemlineata genome provides opportunities to investigate a broad range of phenotypes and to develop sustainable methods to control this widely successful pest.}},  articleno    = {{1931}},  author       = {{Schoville, Sean D and Chen, Yolanda H and Andersson, Martin N and Benoit, Joshua B and Bhandari, Anita and Bowsher, Julia H and Brevik, Kristian and Cappelle, Kaat and Chen, Mei-Ju M and Childers, Anna K and Childers, Christopher and Christiaens, Olivier and Clements, Justin and Didion, Elise M and Elpidina, Elena N and Engsontia, Patamarerk and Friedrich, Markus and García-Robles, Inmaculada and Gibbs, Richard A and Goswami, Chandan and Grapputo, Alessandro and Gruden, Kristina and Grynberg, Marcin and Henrissat, Bernard and Jennings, Emily C and Jones, Jeffery W and Kalsi, Megha and Khan, Sher A and Kumar, Abhishek and Li, Fei and Lombard, Vincent and Ma, Xingzhou and Martynov, Alexander and Miller, Nicholas J and Mitchell, Robert F and Munoz-Torres, Monica and Muszewska, Anna and Oppert, Brenda and Palli, Subba Reddy and Panfilio, Kristen A and Pauchet, Yannick and Perkin, Lindsey C and Petek, Marko and Poelchau, Monica F and Record, Éric and Rinehart, Joseph P and Robertson, Hugh M and Rosendale, Andrew J and Ruiz-Arroyo, Victor M and Smagghe, Guy and Szendrei, Zsofia and Thomas, Gregg WC and Torson, Alex S and Vargas Jentzsch, Iris M and Weirauch, Matthew T and Yates, Ashley D and Yocum, George D and Yoon, June-Sun and Richards, Stephen}},  issn         = {{2045-2322}},  journal      = {{SCIENTIFIC REPORTS}},  keywords     = {{S-TRANSFERASE GENES,RNA-INTERFERENCE,INSECTICIDE RESISTANCE,TRANSPOSABLE ELEMENTS,DROSOPHILA-MELANOGASTER,GEOGRAPHIC POPULATIONS,PROTEINASE-INHIBITORS,TRIBOLIUM-CASTANEUM,CAENORHABDITIS-ELEGANS,CYSTEINE PROTEINASES}},  language     = {{eng}},  pages        = {{18}},  title        = {{A model species for agricultural pest genomics : the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)}},  url          = {{http://doi.org/10.1038/s41598-018-20154-1}},  volume       = {{8}},  year         = {{2018}},}
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Web of Science
Times cited:
Subject
Biology and Life Sciences
Year
Publication type
Journal Article (Original Article)
Publication status
published
Journal title
SCIENTIFIC REPORTS
Sci. Rep.
ISSN
2045-2322
Volume
8
Article number
1931
Pages
18 pages
DOI
10.1038/s41598-018-20154-1
Language
English
UGent publication?
yes
UGent classification
A1
Web of Science type
Article
Web of Science id
000423663100010
JCR category
MULTIDISCIPLINARY SCIENCES
JCR impact factor
4.011 (2018)
JCR rank
15/69 (2018)
JCR quartile
1 (2018)
Copyright statement
Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
id
8552281
Handle
http://hdl.handle.net/1854/LU-8552281
Date created
2018-02-28 09:50:16
Date last changed
2024-07-09 12:52:04

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