Package index

All functions

assign_tax()

Assign taxonomy functions

convert_asv_matrix_to_objs()

Filter ASV abundance matrix and convert to 'taxmap' and 'phyloseq' objects

cut_trim()

Main command to trim primers using 'Cutadapt' and core 'DADA2' functions

make_asv_abund_matrix()

Make an amplified sequence variant (ASV) abundance matrix for each of the input barcodes

prepare_reads()

Prepare reads for primer trimming using 'Cutadapt'