zarr-developers#1615)* Update tutorial.rst to include section about accessing Zip Files on S3Per discussion here, add information about about accessing zip files on s3:zarr-developers#1613* Update release.rst* Implement d-v-b's suggestions---------Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>

* Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (#1586)Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.10...v1.8.11)---updated-dependencies:- dependency-name: pypa/gh-action-pypi-publish  dependency-type: direct:production  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (#1587)Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v2.3.0...v3.0.1)---updated-dependencies:- dependency-name: conda-incubator/setup-miniconda  dependency-type: direct:production  update-type: version-update:semver-major...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* * Cache result of FSStore._fsspec_installed (#1581)Prevent runtime-overhead in doing this check multiple times* Bump version of black in pre-commit (#1559)* Use list comprehension where applicable (#1555)Even if this is only a test, list comprehensions are faster thanrepeatedly call append().Also use tuple instead of list when possible.Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>* Bump numcodecs from 0.11.0 to 0.12.1 (#1580)Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.- [Release notes](https://github.com/zarr-developers/numcodecs/releases)- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)- [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.11.0...v0.12.1)---updated-dependencies:- dependency-name: numcodecs  dependency-type: direct:development  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Joe Hamman <joe@earthmover.io>* Use format specification mini-language to format string (#1558)Co-authored-by: Joe Hamman <joe@earthmover.io>* Single startswith() call instead of multiple ones (#1556)It's faster and probably more readable.Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>Co-authored-by: Joe Hamman <joe@earthmover.io>* Bump pymongo from 4.5.0 to 4.6.1 (#1585)Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.5.0...4.6.1)---updated-dependencies:- dependency-name: pymongo  dependency-type: direct:development  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Joe Hamman <joe@earthmover.io>* Move codespell options around (#1196)Starting with codespell 2.2.2, options can be specified in`pyrpoject.toml` in addition to `setup.cfg`:https://github.com/codespell-project/codespell#using-a-config-fileSpecifying options in a config file instead of command line options in`.pre-commit-config.yaml` ensures codespell uses the same options whenrun as pre-commit hook or from the command line in the repository rootdirectory.* Bump fsspec from 2023.10.0 to 2023.12.1 (#1600)* Bump fsspec from 2023.10.0 to 2023.12.1Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.- [Commits](https://github.com/fsspec/filesystem_spec/compare/2023.10.0...2023.12.1)---updated-dependencies:- dependency-name: fsspec  dependency-type: direct:development  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>* Update s3fs as well* Fix s3fs---------Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* Add type hints to zarr.create (#1536)* Add type hints to zarr.create* Use protocol for MetaArray* Use protocol for Synchronizer* Fix Path typing* Add release note* Fix dim separator typing* Ignore ... in coverage reporting* Fix chunk typing---------Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>* Remove unused mypy ignore comments (#1602)Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>* Bump actions/setup-python from 4.7.1 to 5.0.0 (#1605)Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.- [Release notes](https://github.com/actions/setup-python/releases)- [Commits](https://github.com/actions/setup-python/compare/v4.7.1...v5.0.0)---updated-dependencies:- dependency-name: actions/setup-python  dependency-type: direct:production  update-type: version-update:semver-major...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Joe Hamman <joe@earthmover.io>* Bump github/codeql-action from 2 to 3 (#1609)Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.- [Release notes](https://github.com/github/codeql-action/releases)- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)- [Commits](https://github.com/github/codeql-action/compare/v2...v3)---updated-dependencies:- dependency-name: github/codeql-action  dependency-type: direct:production  update-type: version-update:semver-major...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* chore: update pre-commit hooks (#1448)* chore: update pre-commit hooksupdates:- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.224...v0.1.8)- [github.com/psf/black: 23.10.1 → 23.12.0](https://github.com/psf/black/compare/23.10.1...23.12.0)- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6)- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.4.0...v4.5.0)- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.3.0...v1.7.1)* Attempt to fix ruff* Use isinstance---------Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* chore: update pre-commit hooks (#1618)updates:- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.8...v0.1.9)- [github.com/psf/black: 23.12.0 → 23.12.1](https://github.com/psf/black/compare/23.12.0...23.12.1)- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.7.1...v1.8.0)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Bump fsspec from 2023.12.1 to 2023.12.2 (#1606)* Bump fsspec from 2023.12.1 to 2023.12.2Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.- [Commits](https://github.com/fsspec/filesystem_spec/compare/2023.12.1...2023.12.2)---updated-dependencies:- dependency-name: fsspec  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>* Update requirements_dev_optional.txt---------Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Joe Hamman <joe@earthmover.io>* Bump pytest-doctestplus from 1.0.0 to 1.1.0 (#1619)Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.0.0...v1.1.0)---updated-dependencies:- dependency-name: pytest-doctestplus  dependency-type: direct:development  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump pytest from 7.4.3 to 7.4.4 (#1622)* chore: update pre-commit hooks (#1626)updates:- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.9...v0.1.11)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Create TEAM.md (#1628)* Drop python 3.8 and numpy 1.20 (#1557)* Drop 3.8 and add 3.12* Try removing line_profiler* Also bump the minimal numpy to 1.21* Drop 3.12 again* Revert "Try removing line_profiler"This reverts commit 837854bec99a9d25aece2ead9666f01690d228cc.* Update release.rst---------Co-authored-by: Joe Hamman <joe@earthmover.io>Co-authored-by: jakirkham <jakirkham@gmail.com>* Add Norman Rzepka to core-dev team (#1630)* chore: update pre-commit hooks (#1633)updates:- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.11...v0.1.13)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Bump actions/download-artifact from 3 to 4 (#1611)* Bump actions/download-artifact from 3 to 4Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.- [Release notes](https://github.com/actions/download-artifact/releases)- [Commits](https://github.com/actions/download-artifact/compare/v3...v4)---updated-dependencies:- dependency-name: actions/download-artifact  dependency-type: direct:production  update-type: version-update:semver-major...Signed-off-by: dependabot[bot] <support@github.com>* Also bump upload-artifactsee https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.---------Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Joe Hamman <joe@earthmover.io>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* Update tutorial.rst to include section about accessing Zip Files on S3 (#1615)* Update tutorial.rst to include section about accessing Zip Files on S3Per discussion here, add information about about accessing zip files on s3:https://github.com/zarr-developers/zarr-python/discussions/1613* Update release.rst* Implement d-v-b's suggestions---------Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* doc(v3): add v3 roadmap and design document (#1583)* doc(v3): add v3 roadmap and design document* Update v3-roadmap-and-design.md* updates after latest round of reviews* Update v3-roadmap-and-design.mdCo-authored-by: Norman Rzepka <code@normanrz.com>* Update v3-roadmap-and-design.mdCo-authored-by: Sanket Verma <svsanketverma5@gmail.com>---------Co-authored-by: Norman Rzepka <code@normanrz.com>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>* chore: update pre-commit hooks (#1636)updates:- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.13...v0.1.14)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Fix zarr sync (#1663)This patch removes fasteners and disables zarr.sync which uses process and threadCo-authored-by: Wei Ouyang <oeway007@gmail.com>* Update release.rst (#1621)* Update release.rst* Update release.rst* Change 2.16.2 → 2.17.0* Update moto for test_s3* Skip bsddb3 tests to prevent warning failure* Fix more user warning tests* Fix even more user warning tests* Skip coverage for importorskips* Move to have_X skip method for deps* Update release.rst (PR#1663)* Fix test_core.py 'compile' issues* Add black formatting* Drop Windows/3.9 build due to unrelated failures* fix typo---------Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* Bump numpy from 1.24.3 to 1.26.1 (#1543)Bumps [numpy](https://github.com/numpy/numpy) from 1.24.3 to 1.26.1.- [Release notes](https://github.com/numpy/numpy/releases)- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)- [Commits](https://github.com/numpy/numpy/compare/v1.24.3...v1.26.1)---updated-dependencies:- dependency-name: numpy  dependency-type: direct:development  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>Co-authored-by: Joe Hamman <joe@earthmover.io>* chore: update pre-commit hooks (#1642)* chore: update pre-commit hooksupdates:- [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.2.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.14...v0.2.1)- [github.com/psf/black: 23.12.1 → 24.2.0](https://github.com/psf/black/compare/23.12.1...24.2.0)* run black incl. comments for '...'---------Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* Bump ipywidgets from 8.1.0 to 8.1.1 (#1538)Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.0 to 8.1.1.- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.0...8.1.1)---updated-dependencies:- dependency-name: ipywidgets  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* Proper argument for numpy.reshape (#1425)`numpy.reshape` not only accepts a tuple of ints, but also a simple int.Besides `(10)` is not a tuple and is identical to `10`, unlike `(10,)`.* Bump ipywidgets from 8.1.1 to 8.1.2 (#1666)Bumps [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) from 8.1.1 to 8.1.2.- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.1...8.1.2)---updated-dependencies:- dependency-name: ipywidgets  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* docs: ZIP-related tweaks (#1641)* docs: use 'ZIP archive' instead of 'zip file'; clarify utility of caching in s3 + ZIP example; style* docs: update release notes, correct spelling of greg lee's name in past release notes, and fix markup in past release notes* docs: use 'ZIP archive' instead of 'zip file'; clarify utility of caching in s3 + ZIP example; style* docs: update release notes, correct spelling of greg lee's name in past release notes, and fix markup in past release notes* Bump numpy from 1.26.1 to 1.26.4 (#1669)Bumps [numpy](https://github.com/numpy/numpy) from 1.26.1 to 1.26.4.- [Release notes](https://github.com/numpy/numpy/releases)- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)- [Commits](https://github.com/numpy/numpy/compare/v1.26.1...v1.26.4)---updated-dependencies:- dependency-name: numpy  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Change occurrences of % and format() to f-strings (#1423)Co-authored-by: Joe Hamman <joe@earthmover.io>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* chore: update pre-commit hooks (#1672)updates:- [github.com/astral-sh/ruff-pre-commit: v0.2.1 → v0.2.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.1...v0.2.2)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Bump pymongo from 4.6.1 to 4.6.2 (#1674)Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.6.1 to 4.6.2.- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/4.6.2/doc/changelog.rst)- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.1...4.6.2)---updated-dependencies:- dependency-name: pymongo  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump conda-incubator/setup-miniconda from 3.0.1 to 3.0.2 (#1677)Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.1 to 3.0.2.- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.1...v3.0.2)---updated-dependencies:- dependency-name: conda-incubator/setup-miniconda  dependency-type: direct:production  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Update config.yml with Zulip* Type dimension separator (#1620)Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>* Replace Gitter with new Zulip Chat link (#1685)* Replace Gitter with Zulip* Replace Gitter with Zulip in remaining places* Bump redis from 5.0.1 to 5.0.2 (#1688)Bumps [redis](https://github.com/redis/redis-py) from 5.0.1 to 5.0.2.- [Release notes](https://github.com/redis/redis-py/releases)- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)- [Commits](https://github.com/redis/redis-py/compare/v5.0.1...v5.0.2)---updated-dependencies:- dependency-name: redis  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump pypa/gh-action-pypi-publish from 1.8.11 to 1.8.12 (#1691)Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.11 to 1.8.12.- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.11...v1.8.12)---updated-dependencies:- dependency-name: pypa/gh-action-pypi-publish  dependency-type: direct:production  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump pytest-doctestplus from 1.1.0 to 1.2.0 (#1693)Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.1.0 to 1.2.0.- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.1.0...v1.2.0)---updated-dependencies:- dependency-name: pytest-doctestplus  dependency-type: direct:development  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Fix RTD build (#1694)* Update release.rst for v2.17.1 (#1673)* Update release.rst for v2.17.1* Change the copyright year from 2023 → 2024.* Update release.rst for v2.17.1* Bump pytest-timeout from 2.2.0 to 2.3.1 (#1697)Bumps [pytest-timeout](https://github.com/pytest-dev/pytest-timeout) from 2.2.0 to 2.3.1.- [Commits](https://github.com/pytest-dev/pytest-timeout/compare/2.2.0...2.3.1)---updated-dependencies:- dependency-name: pytest-timeout  dependency-type: direct:development  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump conda-incubator/setup-miniconda from 3.0.2 to 3.0.3 (#1690)Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.2 to 3.0.3.- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.2...v3.0.3)---updated-dependencies:- dependency-name: conda-incubator/setup-miniconda  dependency-type: direct:production  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>* docs(tutorial.rst): fix link to GCSMap (#1689)* Update installation.rst stating version support policy (#1665)* Update installation.rst stating version support policy* Update docs/installation.rstCo-authored-by: Joe Hamman <jhamman1@gmail.com>* Update docs/installation.rst---------Co-authored-by: Joe Hamman <jhamman1@gmail.com>* Bump pypa/gh-action-pypi-publish from 1.8.12 to 1.8.14 (#1700)Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.12 to 1.8.14.- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.12...v1.8.14)---updated-dependencies:- dependency-name: pypa/gh-action-pypi-publish  dependency-type: direct:production  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump pytest-doctestplus from 1.2.0 to 1.2.1 (#1699)Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.2.0 to 1.2.1.- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)- [Commits](https://github.com/scientific-python/pytest-doctestplus/compare/v1.2.0...v1.2.1)---updated-dependencies:- dependency-name: pytest-doctestplus  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>* Bump redis from 5.0.2 to 5.0.3 (#1698)Bumps [redis](https://github.com/redis/redis-py) from 5.0.2 to 5.0.3.- [Release notes](https://github.com/redis/redis-py/releases)- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)- [Commits](https://github.com/redis/redis-py/compare/v5.0.2...v5.0.3)---updated-dependencies:- dependency-name: redis  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>* Add Python 3.12 to CI (#1719)* Update python-package.yml* bump numpy versions* bump min python version* Update release.rst* Bump pytest-cov from 4.1.0 to 5.0.0 (#1722)Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 4.1.0 to 5.0.0.- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)- [Commits](https://github.com/pytest-dev/pytest-cov/compare/v4.1.0...v5.0.0)---updated-dependencies:- dependency-name: pytest-cov  dependency-type: direct:development  update-type: version-update:semver-major...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* chore: update pre-commit hooks (#1708)updates:- [github.com/astral-sh/ruff-pre-commit: v0.2.2 → v0.3.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.2...v0.3.3)- [github.com/psf/black: 24.2.0 → 24.3.0](https://github.com/psf/black/compare/24.2.0...24.3.0)- [github.com/pre-commit/mirrors-mypy: v1.8.0 → v1.9.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.8.0...v1.9.0)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>* chore: update pre-commit hooks (#1723)updates:- [github.com/astral-sh/ruff-pre-commit: v0.3.3 → v0.3.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.3...v0.3.4)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Fix release notes (following #1719) (#1725)* Override ipython repr methods. (#1724)Closes #1716This avoids expensive lookups against object stores.* Bump pymongo from 4.6.2 to 4.6.3 (#1729)* Remove v1 and v2 specification (#1582)* Remove v1 and v2 specification* fix warning---------Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>* chore: update pre-commit hooks (#1738)updates:- [github.com/astral-sh/ruff-pre-commit: v0.3.4 → v0.3.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.4...v0.3.5)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Optimize Array.info and Group.info (#1733)* Optimize Array.info.Avoid repeated computes of the same value (getsize)* Don't have InfoReporter query items twice.Apparently IPython will run both __repr__ and _repr_html_so we were calling `getsize` twice.* Group too* Apply suggestions from code reviewCo-authored-by: Joe Hamman <jhamman1@gmail.com>---------Co-authored-by: Joe Hamman <jhamman1@gmail.com>* Bump actions/setup-python from 5.0.0 to 5.1.0 (#1736)Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.0.0 to 5.1.0.- [Release notes](https://github.com/actions/setup-python/releases)- [Commits](https://github.com/actions/setup-python/compare/v5.0.0...v5.1.0)---updated-dependencies:- dependency-name: actions/setup-python  dependency-type: direct:production  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Couple fixes (#1737)* Use `is` when comparing `type` of two objects* Unnecessary `None` provided as default* Fix tests with Pytest 8 (#1714)* Bump pytest version* Use editable install when testing---------Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>* Avoid redundant __contains__ (#1739)Let's try grabbing the array.json and group.json files,and check for `*NotFoundError`, instead of using contains first.Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>* Array & Group: Use already loaded attributes to populate cache. (#1734)* Array: Use already loaded attributes to populate cache.* Group: Use already loaded attributes to populate cache.* Fix* Add release note* Optimize attribute setting (#1741)* Optimize attribute setting* Add release note---------Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>* Make sure fs exceptions are raised if not MissingFs exceptions (clone) (#1604)* Make sure fs exceptions are raised if not Missing* lint* add missing argument in tests, lint* clear memory filesystem during test* improve commenting* add memory_store fixture, getitems performance* Update release.rst* improve FSStore.test_exception coverage---------Co-authored-by: Martin Durant <martin.durant@alumni.utoronto.ca>Co-authored-by: Joe Hamman <joe@earthmover.io>Co-authored-by: Josh Moore <josh@openmicroscopy.org>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>* chore(release): update changelog for 2.17.2 (#1775)* chore(docs): reset release notes as unreleased (#1776)* Bump codecov/codecov-action from 3 to 4 (#1647)* Bump codecov/codecov-action from 3 to 4Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4.- [Release notes](https://github.com/codecov/codecov-action/releases)- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)- [Commits](https://github.com/codecov/codecov-action/compare/v3...v4)---updated-dependencies:- dependency-name: codecov/codecov-action  dependency-type: direct:production  update-type: version-update:semver-major...Signed-off-by: dependabot[bot] <support@github.com>* Set codecov env---------Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>* Update release.rst for v2.17.2 (#1778)* Update release.rst for v2.17.2* Minor edits---------Co-authored-by: Joe Hamman <joe@earthmover.io>* Deprecate the experimental v3 implementation (#1802)* deprecate(exp-v3): Add a future warning about the pending removal of the experimental v3 implementation* ignore warning* add test* chore: update pre-commit hooks (#1779)updates:- [github.com/astral-sh/ruff-pre-commit: v0.3.5 → v0.3.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.5...v0.3.7)- [github.com/psf/black: 24.3.0 → 24.4.0](https://github.com/psf/black/compare/24.3.0...24.4.0)- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Fix `is_total_slice` for size-1 dimensions (#1800)Closes #1730Co-authored-by: Ryan Abernathey <ryan.abernathey@gmail.com>Co-authored-by: Joe Hamman <joe@earthmover.io>* add note to the top of the release page noting the plan for 2.18.* and 3.0 (#1816)* Bump conda-incubator/setup-miniconda from 3.0.3 to 3.0.4 (#1824)Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.3 to 3.0.4.- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)- [Commits](https://github.com/conda-incubator/setup-miniconda/compare/v3.0.3...v3.0.4)---updated-dependencies:- dependency-name: conda-incubator/setup-miniconda  dependency-type: direct:production  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* dep(docs): deprecate experimental v3 support in docs (#1807)* dep(docs): deprecate experimental v3 support in docs* Apply suggestions from code reviewCo-authored-by: Josh Moore <josh@openmicroscopy.org>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>---------Co-authored-by: Josh Moore <josh@openmicroscopy.org>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>* Bump h5py from 3.10.0 to 3.11.0 (#1786)Bumps [h5py](https://github.com/h5py/h5py) from 3.10.0 to 3.11.0.- [Release notes](https://github.com/h5py/h5py/releases)- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)- [Commits](https://github.com/h5py/h5py/compare/3.10.0...3.11.0)---updated-dependencies:- dependency-name: h5py  dependency-type: direct:development  update-type: version-update:semver-minor...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Joe Hamman <joe@earthmover.io>* Bump redis from 5.0.3 to 5.0.4 (#1810)Bumps [redis](https://github.com/redis/redis-py) from 5.0.3 to 5.0.4.- [Release notes](https://github.com/redis/redis-py/releases)- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)- [Commits](https://github.com/redis/redis-py/compare/v5.0.3...v5.0.4)---updated-dependencies:- dependency-name: redis  dependency-type: direct:development  update-type: version-update:semver-patch...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* deprecate(stores): add deprecation warnings to stores that we plan to remove in v3 (#1801)* deprecate(stores): add deprecation warnings to DBMStore, LMDBStore, SQLiteStore, MongoDBStore, RedisStore, and ABSStore* filter warnings in pytest config* more deprecation warnings in docstrings* add release note* use np.inf instead of PINF/NINF (#1842)* use np.inf instead of PINF/NINF* update release notes* chore: update pre-commit hooks (#1825)updates:- [github.com/astral-sh/ruff-pre-commit: v0.4.1 → v0.4.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.1...v0.4.3)- [github.com/psf/black: 24.4.0 → 24.4.2](https://github.com/psf/black/compare/24.4.0...24.4.2)- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.9.0...v1.10.0)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Enable ruff/bugbear rules (B) and fix issues (#1702)* Enable ruff/bugbear rules (B)As suggested by Repo-Review.* Fix ruff/bugbear issue (B007)B007 Loop control variable `key` not used within loop bodyhttps://docs.astral.sh/ruff/rules/unused-loop-control-variable/* Fix ruff/bugbear issue (B015)B015 Pointless comparison. Did you mean to assign a value?     Otherwise, prepend `assert` or remove it.https://docs.astral.sh/ruff/rules/useless-comparison/* Fix ruff/bugbear issues (B028)B028 No explicit `stacklevel` keyword argument foundhttps://docs.astral.sh/ruff/rules/no-explicit-stacklevel/* Fix ruff/bugbear issues (B904)B904 Within an `except` clause, raise exceptions with `raise ... from err` or     `raise ... from None` to distinguish them from errors in exception handlinghttps://docs.astral.sh/ruff/rules/raise-without-from-inside-except/* Document changes in docs/release.rst* Disable ruff/bugbear rule (B017)B017 `pytest.raises(Exception)` should be considered evilhttps://docs.astral.sh/ruff/rules/assert-raises-exception/---------Co-authored-by: Joe Hamman <joe@earthmover.io>* Release notes for 2.18.0 (#1843)* doc: cleanup release notes for 2.18.0* Update release.rst (#1850)* Group dependabot updates (#1854)* chore: update pre-commit hooks (#1876)updates:- [github.com/astral-sh/ruff-pre-commit: v0.4.3 → v0.4.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.3...v0.4.4)Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>* Fix a regression with scalar indexing due to #1800 (#1875)* release notes for 2.18.1 (#1885)* reset release notes (#1886)* Add zstd to old V3 supported codecs (#1914)* add zstd to old V3 supported codecs* get to full test coverage and add release note* fix pre-commit* doc: update release notes for 2.18.2 (#1915)* Drop support for Python 3.9* Revert "Drop support for Python 3.9"This reverts commit a054afbbdaf7c8560d0ce5df77af969bc863e335.* Update TEAM.md (#2071)* [v2] Fix doctests with numpy 2.0 (#2073)* Fix version number in built docs (#2044)* Fix orthogonal indexing with scalar. (#1947)Co-authored-by: David Stansby <dstansby@gmail.com>* Bump the requirements group across 1 directory with 7 updates (#2092)Bumps the requirements group with 7 updates in the / directory:| Package | From | To || --- | --- | --- || [numpy](https://github.com/numpy/numpy) | `1.26.4` | `2.0.1` || [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) | `8.1.2` | `8.1.3` || [setuptools-scm](https://github.com/pypa/setuptools_scm) | `8.0.4` | `8.1.0` || [pytest](https://github.com/pytest-dev/pytest) | `8.1.1` | `8.3.2` || [lmdb](https://github.com/jnwatson/py-lmdb) | `1.4.1` | `1.5.1` || [redis](https://github.com/redis/redis-py) | `5.0.4` | `5.0.8` || [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.6.3` | `4.8.0` |Updates `numpy` from 1.26.4 to 2.0.1- [Release notes](https://github.com/numpy/numpy/releases)- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)- [Commits](https://github.com/numpy/numpy/compare/v1.26.4...v2.0.1)Updates `ipywidgets` from 8.1.2 to 8.1.3- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.2...8.1.3)Updates `setuptools-scm` from 8.0.4 to 8.1.0- [Release notes](https://github.com/pypa/setuptools_scm/releases)- [Changelog](https://github.com/pypa/setuptools_scm/blob/main/CHANGELOG.md)- [Commits](https://github.com/pypa/setuptools_scm/compare/v8.0.4...v8.1.0)Updates `pytest` from 8.1.1 to 8.3.2- [Release notes](https://github.com/pytest-dev/pytest/releases)- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)- [Commits](https://github.com/pytest-dev/pytest/compare/8.1.1...8.3.2)Updates `lmdb` from 1.4.1 to 1.5.1- [Changelog](https://github.com/jnwatson/py-lmdb/blob/master/ChangeLog)- [Commits](https://github.com/jnwatson/py-lmdb/compare/py-lmdb_1.4.1...py-lmdb_1.5.1)Updates `redis` from 5.0.4 to 5.0.8- [Release notes](https://github.com/redis/redis-py/releases)- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)- [Commits](https://github.com/redis/redis-py/compare/v5.0.4...v5.0.8)Updates `pymongo` from 4.6.3 to 4.8.0- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.6.3...4.8.0)---updated-dependencies:- dependency-name: numpy  dependency-type: direct:development  update-type: version-update:semver-major  dependency-group: requirements- dependency-name: ipywidgets  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements- dependency-name: setuptools-scm  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements- dependency-name: pytest  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements- dependency-name: lmdb  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements- dependency-name: redis  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements- dependency-name: pymongo  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump the actions group with 2 updates (#2087)Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).Updates `actions/setup-python` from 5.1.0 to 5.1.1- [Release notes](https://github.com/actions/setup-python/releases)- [Commits](https://github.com/actions/setup-python/compare/v5.1.0...v5.1.1)Updates `pypa/gh-action-pypi-publish` from 1.8.14 to 1.9.0- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.14...v1.9.0)---updated-dependencies:- dependency-name: actions/setup-python  dependency-type: direct:production  update-type: version-update:semver-patch  dependency-group: actions- dependency-name: pypa/gh-action-pypi-publish  dependency-type: direct:production  update-type: version-update:semver-minor  dependency-group: actions...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* [v2] Drop support for Python 3.9 (#2074)* Drop support for Python 3.9* Ignore B905 ruff rule* Fix release notes* Fix Array.__array__ for numpy 2.1 (#2106)* Fix Array.__array__ for numpy 2.1* Add changelog* Depend on np.array for array coercions* Bump test version of numcodecs (#2114)* Bump test version of numcodecs* Fix test for numcodecs 0.13* fix: numpy 1.24 compat for Array.__array__ (#2123)* Deprecate N5Store (#2103)* deprecate(n5): add deprecation warning to N5Store* also deprecate N5FSStore* docs* fix doc* Run tests on numpy 1.23 (#2124)* Bump the requirements group across 1 directory with 3 updates (#2129)Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).Updates `numpy` from 2.0.1 to 2.1.0- [Release notes](https://github.com/numpy/numpy/releases)- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)- [Commits](https://github.com/numpy/numpy/compare/v2.0.1...v2.1.0)Updates `ipywidgets` from 8.1.3 to 8.1.5- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)- [Commits](https://github.com/jupyter-widgets/ipywidgets/compare/8.1.3...8.1.5)Updates `azure-storage-blob` from 12.16.0 to 12.21.0- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)- [Commits](https://github.com/Azure/azure-sdk-for-python/compare/azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)---updated-dependencies:- dependency-name: numpy  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements- dependency-name: ipywidgets  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements- dependency-name: azure-storage-blob  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* chore: bump minimum numpy version to 1.24 (#2127)* chore: bump minimum version to 1.24* Update .github/workflows/python-package.yml* Remove un-needed package installs in CI (#2095)* Bump the actions group with 2 updates (#2146)Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).Updates `actions/setup-python` from 5.1.1 to 5.2.0- [Release notes](https://github.com/actions/setup-python/releases)- [Commits](https://github.com/actions/setup-python/compare/v5.1.1...v5.2.0)Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.9.0...v1.10.0)---updated-dependencies:- dependency-name: actions/setup-python  dependency-type: direct:production  update-type: version-update:semver-minor  dependency-group: actions- dependency-name: pypa/gh-action-pypi-publish  dependency-type: direct:production  update-type: version-update:semver-minor  dependency-group: actions...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump numpy from 2.1.0 to 2.1.1 in the requirements group (#2151)Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).Updates `numpy` from 2.1.0 to 2.1.1- [Release notes](https://github.com/numpy/numpy/releases)- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)- [Commits](https://github.com/numpy/numpy/compare/v2.1.0...v2.1.1)---updated-dependencies:- dependency-name: numpy  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* chore(docs): update release notes ahead of 2.18.4 (#2152)* Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions group (#2161)Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.0...v1.10.1)---updated-dependencies:- dependency-name: pypa/gh-action-pypi-publish  dependency-type: direct:production  update-type: version-update:semver-patch  dependency-group: actions...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* [docs] remove primary sidebar from tutorial (#2142)* remove primary sidebar from tutorial* lint* Bump pytest from 8.3.2 to 8.3.3 in the requirements group (#2172)Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).Updates `pytest` from 8.3.2 to 8.3.3- [Release notes](https://github.com/pytest-dev/pytest/releases)- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)- [Commits](https://github.com/pytest-dev/pytest/compare/8.3.2...8.3.3)---updated-dependencies:- dependency-name: pytest  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump pypa/gh-action-pypi-publish in the actions group (#2220)Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.1...v1.10.2)---updated-dependencies:- dependency-name: pypa/gh-action-pypi-publish  dependency-type: direct:production  update-type: version-update:semver-patch  dependency-group: actions...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Update TEAM.md (#2227)* Bump the requirements group across 1 directory with 3 updates (#2284)Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).Updates `redis` from 5.0.8 to 5.1.0- [Release notes](https://github.com/redis/redis-py/releases)- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)- [Commits](https://github.com/redis/redis-py/compare/v5.0.8...v5.1.0)Updates `pymongo` from 4.8.0 to 4.10.0- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.8.0...4.10.0)Updates `h5py` from 3.11.0 to 3.12.1- [Release notes](https://github.com/h5py/h5py/releases)- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)- [Commits](https://github.com/h5py/h5py/compare/3.11.0...3.12.1)---updated-dependencies:- dependency-name: redis  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements- dependency-name: pymongo  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements- dependency-name: h5py  dependency-type: direct:development  update-type: version-update:semver-minor  dependency-group: requirements...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (#2288)Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).Updates `pymongo` from 4.10.0 to 4.10.1- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)- [Commits](https://github.com/mongodb/mongo-python-driver/compare/4.10.0...4.10.1)---updated-dependencies:- dependency-name: pymongo  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Fix low contrast box titles (#2287) (#2292)* Bump pypa/gh-action-pypi-publish in the actions group (#2304)Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.10.2...v1.10.3)---updated-dependencies:- dependency-name: pypa/gh-action-pypi-publish  dependency-type: direct:production  update-type: version-update:semver-patch  dependency-group: actions...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump the requirements group with 2 updates (#2303)Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).Updates `numpy` from 2.1.1 to 2.1.2- [Release notes](https://github.com/numpy/numpy/releases)- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)- [Commits](https://github.com/numpy/numpy/compare/v2.1.1...v2.1.2)Updates `redis` from 5.1.0 to 5.1.1- [Release notes](https://github.com/redis/redis-py/releases)- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)- [Commits](https://github.com/redis/redis-py/compare/v5.1.0...v5.1.1)---updated-dependencies:- dependency-name: numpy  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements- dependency-name: redis  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (#2326)Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).Updates `numcodecs` from 0.13.0 to 0.13.1- [Release notes](https://github.com/zarr-developers/numcodecs/releases)- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)- [Commits](https://github.com/zarr-developers/numcodecs/compare/v0.13.0...v0.13.1)---updated-dependencies:- dependency-name: numcodecs  dependency-type: direct:development  update-type: version-update:semver-patch  dependency-group: requirements...Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>* remove zarr.types from v2---------Signed-off-by: dependabot[bot] <support@github.com>Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>Co-authored-by: Janick Martinez Esturo <janick@jme.pub>Co-authored-by: David Stansby <dstansby@gmail.com>Co-authored-by: Dimitri Papadopoulos Orfanos <3234522+DimitriPapadopoulos@users.noreply.github.com>Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>Co-authored-by: Josh Moore <josh@openmicroscopy.org>Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>Co-authored-by: jakirkham <jakirkham@gmail.com>Co-authored-by: Jeff Peck <jeffrey.peck@10xgenomics.com>Co-authored-by: Norman Rzepka <code@normanrz.com>Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>Co-authored-by: Hood Chatham <roberthoodchatham@gmail.com>Co-authored-by: Wei Ouyang <oeway007@gmail.com>Co-authored-by: Daniel Jahn (dahn) <dahnjahn@gmail.com>Co-authored-by: Deepak Cherian <dcherian@users.noreply.github.com>Co-authored-by: Ian Carroll <carroll.ian@gmail.com>Co-authored-by: Martin Durant <martin.durant@alumni.utoronto.ca>Co-authored-by: Ryan Abernathey <ryan.abernathey@gmail.com>Co-authored-by: Jonny Saunders <sneakers-the-rat@protonmail.com>