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Observational study of central venous catheter-related thrombosis

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umg-minai/crt

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Project Status: Inactive – The project has reached a stable, usable state but is no longer being actively developed; support/maintenance will be provided as time allows.DOI

Publication:

Sebastian Gibb, Sebastian Engelhardt, Falk von Dincklage, Sven-Olaf Kuhn,
Incidence and onset of central venous catheter-related thrombosis in critically ill surgical patients: A prospective observational single-center study,
Journal of Clinical Anesthesia, Volume 97, 2024,10.1016/j.jclinane.2024.111556.

Bootstrap

We useguix to ensure an reproducible computing environment.

Guix on debian

sudo apt install make git guix

Fetch sources

git clone git@github.com:umg-minai/crt.git

Build manuscript

Runningmake the first time will take some time becauseguix hast to download the given state and build the image.

make

Modify the manuscript

All the work has to be done in thesections/*.Rmd files.

Make targets

  • make ormake manuscript produces an.html file inoutput/.
  • make dist produces a.docx indistribute/ which could be send to theco-authors.
  • make gh-pages updates thegh-pages branch to the latest manuscript.
  • make clean removes all generated files.

Update data

If the raw data changed, you have to callmake regenerate-data manually(The data file doesn't depend on the raw data to avoid errors ifothers who don't own the raw data checkout the repository.)

Contact/Contribution

You are welcome to:

We try to follow:


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