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1. prokkaprokkaPublic

   ⚡ ♒ Rapid prokaryotic genome annotation

   Perl 879 227

2. snippysnippyPublic

   ✂️ ⚡ Rapid haploid variant calling and core genome alignment

   Perl 499 117

3. shovillshovillPublic

   ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

   Perl 218 46

4. abricateabricatePublic

   🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

   Perl 394 95

5. nullarbornullarborPublic

   💾 📃 "Reads to report" for public health and clinical microbiology

   Perl 139 38

6. mlstmlstPublic

   🆔 Scan contig files against PubMLST typing schemes

   Shell 219 48