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vcf-format
Here are 8 public repositories matching this topic...
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snpsbinarynexusvcfphylogeneticsalignmentfastasnappphylipvcf-filespolyploidhaploidphylogenetic-analysisoutgroupconvert-snpsvcf-formatphylip-matrixdiploid
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Jul 7, 2023 - Python
Learning the Variant Call Format
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Mar 25, 2024 - Perl
BioC++ Input/Output library
tsvc-plus-pluscsvmodern-cppvcfbiopythonheader-onlyfastafastq-formatseqanfastqbcfbcftoolsinput-outputsequence-analysisfasta-formatcplusplus-20vcf-formatbiocpp
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May 12, 2023 - C++
Checks vcf files and removes loci and samples with too many missings, can also input genotypes in missing (various options for this).
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Dec 4, 2023 - Perl
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Dec 16, 2018 - Python
A command-line parser for VCF files designed for population genetics analyses.
parsinggeneticsvcfpopulation-genomicspopulation-geneticsgenotypevcf-filesallele-frequenciesallelesdiversity-measuresheterozygosityvcf-formathomozygositydiversity-analysisvcfparser
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Apr 14, 2023 - Java
Modify KASP assay calls to a VCF format
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May 21, 2024 - Shell
Convert an standard VCF to JSON format
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Oct 25, 2024 - Python
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