The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

• UpdatedNov 14, 2024
• C++

Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.

• UpdatedJan 3, 2025
• C++

A project to create synthetic vascular networks utilising L-Systems.

• UpdatedMar 17, 2025
• Python

#ZVQ - Zebrafish Vascular Quantification -https://doi.org/10.1242/dev.199720

• UpdatedMay 24, 2023
• ImageJ Macro

Public-facing repository for SLAVV software

• UpdatedAug 5, 2023
• MATLAB

Software to analyse the topology of vascular networks.

• UpdatedFeb 12, 2025
• Python

A rudimentary SOFA application that uses an open-source framework to target real-time robotics simulation, with an emphasis on medical schemas.

• UpdatedMar 28, 2021
• Python

[MICCAI 2024] TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields

• UpdatedJun 18, 2024
• Python

Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"

• UpdatedJul 4, 2024
• Python

Collide vasculature and neurons for fun and profit (?)

• UpdatedOct 23, 2021
• C++

Code for "Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys"

• UpdatedAug 27, 2024
• Jupyter Notebook

Network flow model of the zebrafish trunk vasculature (Control and Wasp Mutant data included) as part of the study presented by Rosa et. al. 2022 (https://journals.biologists.com/dev/article/149/3/dev200195/274169)

• UpdatedSep 3, 2020
• MATLAB