strobemers
Here are 6 public repositories matching this topic...
Aligns short reads using dynamic seed size with strobemers
- Updated
Mar 10, 2025 - C++
Long-read splice alignment with high accuracy
- Updated
Sep 26, 2024 - Python
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGABhttps://doi.org/10.1093/nargab/lqad004)
- Updated
May 10, 2023 - C
A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
- Updated
Apr 23, 2021 - Go
Benchmarking pre-filtering large databases before short-read mapping
- Updated
Aug 9, 2024 - Python
Rust implementation of alignment-free similarity estimation methods.
- Updated
Aug 25, 2024 - Rust
Improve this page
Add a description, image, and links to thestrobemers topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with thestrobemers topic, visit your repo's landing page and select "manage topics."