sequence-alignment
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Official git repository for Biopython (originally converted from CVS)
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Oct 10, 2025 - Python
A versatile pairwise aligner for genomic and spliced nucleotide sequences
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Oct 5, 2025 - C
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
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Mar 22, 2025 - C
Versatile open-source tool for microbiome analysis
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Oct 3, 2025 - C++
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
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Jul 18, 2025 - Java
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
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May 13, 2025 - C++
Sequence-to-graph mapper and graph generator
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Aug 11, 2025 - C
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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Oct 7, 2025 - C++
Align proteins to genomes with splicing and frameshift
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Sep 20, 2025 - C
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
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Sep 22, 2025 - JavaScript
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
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Sep 23, 2025 - Go
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
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Dec 1, 2024 - Python
A fast multiple sequence alignment program.
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Jul 8, 2025 - C
Comparative Genomics Toolkit 3
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Oct 10, 2025 - Python
Neural Networks for Protein Sequence Alignment
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Nov 11, 2024 - Python
Rust bindings to minimap2 library
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Oct 13, 2025 - Jupyter Notebook
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