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J535D165 /CoronaWatchNL

Sponsor

Star141

Numbers concerning COVID-19 disease cases in The Netherlands by RIVM, LCPS, NICE, ECML, and Rijksoverheid.

json-api dataset netherlands utrecht-university rivm coronavirus coronavirus-globaloutbreak coronavirus-tracking coronavirus-real-time covid-19 covid19-data covid19-dataset

UpdatedApr 18, 2021
Jupyter Notebook

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

surveillance ngs clinical metagenomics public-health diagnostics viruses erasmus virology rivm viromics virus-typing

UpdatedSep 1, 2023
Python

hungrxyz /Infected

Star16

SwiftUI iOS app showing latest COVID-19 numbers for the Netherlands.

ios netherlands swiftui rivm coronavirus covid-19

UpdatedAug 9, 2021
Swift

RIVM-bioinformatics /AmpliGone

Star16

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

python bioinformatics nanopore pcr illumina ngs-analysis amplicon-sequencing rivm

UpdatedFeb 17, 2025
Python

RIVM-bioinformatics /SARS2seq

Star6

SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.

python bioinformatics snakemake public-health viruses virology ngs-analysis snakemake-workflow rivm consensus-sequences coronavirus coronavirus-analysis

UpdatedJul 3, 2024
Python

RIVM-bioinformatics /ViroConstrictor

Star6

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

python bioinformatics snakemake analysis public-health viruses virology ngs-analysis snakemake-workflow rivm consensus-sequences

UpdatedMar 6, 2025
Python

hughrawlinson /can-i-please-get-vaccinated

Star3

🦠🇳🇱 Hey The Netherlands Please Give Me The Thing That Makes It Less Likely For Me To Get Corona Again

netherlands rivm covid-19

UpdatedJul 16, 2022
JavaScript

WaitsApp-Open /hetcheckgesprek

Star2

open-source, gratis, tracking vrij, tracing vrij Check Gesprek Health Check app (by Waits.App)

privacy-protection rivm covid-19 checkgesprek gezondheidscheck

UpdatedJun 4, 2020
HTML

DennisSchmitz /2018-09-10-RIVM

Star1

RIVM Bioinformatics Workshop: Genomics Data Wrangling. September 2018.

linux bash education bioinformatics workshop genomics ngs carpentry carpentry-workshop rivm

UpdatedSep 10, 2018
Python

hungrxyz /infected-data

Star1

Data repository and tool for public COVID-19 data in The Netherlands.

rivm covid-19 infected-data

UpdatedDec 11, 2022
Swift

jamy015 /covid-stats

Star0

COVID-19 data x Python

python plotly pandas cbs rivm covid-19

UpdatedApr 1, 2022
Jupyter Notebook

gerritjandebruin /groep-check.nl

Star0

This repository featuredhttps://groep-check.nl, a website that allows you to calculate the probability that at least one person in a group is infected. Currently broken because of API change at RIVM.

rivm covid-19 prevalence-estimation