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quast
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The repository contains a comprehensive pipeline for genome assembly and quality assessment, designed for genomic data analysis. It integrates various bioinformatics tools for accurate genome assembly.
spadesfastpquastnextflow-pipelinedynamic-command-construction-for-preprocessingscalability-across-computational-environmentsa-detailed-demonstration-of-naming-consistencytrimming-combinations
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Jun 15, 2024 - HTML
Run multiple metagenome filtering programs using Docker containers
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Aug 4, 2023 - Shell
🦇🧫📊Study on bat gut shotgun metagenomics
phylogeneticsbeta-diversitymicrobial-communitiesblastspadesdifferential-abundance-analysesfastq-filesrefseqalpha-diversityprokkaquastkraken2abricatelab-journalmaaslin2shotgun-metagenomicsfastanihumann3virsorter2
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Feb 19, 2025 - HTML
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