quantitative-imaging

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OHIF /Viewers

Star4k

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

javascript reactjs dicom medical medical-imaging quantitative-imaging imaging-informatics cancer-imaging-research image-analysis imaging hacktoberfest medical-image-processing nci-itcr nci-qin dicom-viewer healthcare-imaging

UpdatedDec 17, 2025
TypeScript

QIICR /dcmqi

Star275

dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

dicom quantitative-imaging imaging-informatics converters cancer-imaging-research medical-image-computing 3d-slicer nci-itcr tcia-dac nci-qin 3d-slicer-extension

UpdatedJul 17, 2025
C++

PyTomography /PyTomography

Star155

This repository enables easy and fast medical image reconstruction in Python.

python image-reconstruction pytorch medical-imaging quantitative-imaging nuclear-medicine spect

UpdatedMay 1, 2025
Python

AIM-Harvard /SlicerRadiomics

Star116

A Slicer extension to provide a GUI around pyradiomics

cancer quantitative-imaging imaging 3d-slicer clinical-research radiomics nciitcr nci-itcr

UpdatedOct 24, 2025
Python

wdika /mridc

Star40

Data Consistency Toolbox for Magnetic Resonance Imaging

machine-learning deep-learning compressed-sensing pytorch mri medical-imaging quantitative-imaging convolutional-neural-networks unet medical-image-processing medical-image-analysis data-consistency mri-reconstruction fastmri quantitative-image-analysis recurrent-inference-machines variational-network cirim quantitative-mri

UpdatedApr 29, 2024
Jupyter Notebook

OHIF /VTKPlugin

Star35

OHIF Plugin for The Visualization Toolkit (VTK)

quantitative-imaging imaging-informatics image-analysis medical-image-processing nci-itcr nci-qin ohif-plugin

UpdatedOct 3, 2018
JavaScript

cimentaur /polyquant

Star28

Matlab toolbox for polyenergetic quantitative (polyquant) X-ray CT reconstruction with demos.

image-processing medical-imaging statistical-inference quantitative-imaging reconstruction-toolbox medical-image-computing matlab-toolbox cbct computed-tomography medical-physics scatter poisson-reconstruction cone-beam-ct ct-reconstruction

UpdatedJun 3, 2019
MATLAB

QIICR /QuantitativeReporting

Star25

Segmentation-based measurements with DICOM import and export of the results.

dicom quantitative-imaging medical-image-computing nciitcr nci-itcr nci-qin 3d-slicer-extension

UpdatedNov 26, 2025
Python

dicomtools /TriDFusion

Star23

TriDFusion (3DF) Medical Imaging Viewer

machine-learning matlab dicom medical-imaging registration quantitative-imaging imaging-informatics cancer-imaging-research segmentation volume-rendering image-analysis dicom-rt imaging multimodality radiomics medical-image-processing dosimetry dicom-viewer dicom-resampling healthcare-imaging

UpdatedNov 7, 2025
MATLAB

SlicerProstate /SlicerProstate

Star22

An extension to 3D Slicer to support quantitative imaging and image-guided interventions research in prostate cancer.

quantitative-imaging medical-image-computing 3d-slicer cancer-imaging

UpdatedFeb 25, 2025
C++

mantidproject /mantidimaging

Star16

Graphical toolkit for neutron imaging.

python image-reconstruction image-processing quantitative-imaging tomography imaging neutron-imaging tomographic-reconstruction

UpdatedDec 16, 2025
Python

DanuserLab /cmeAnalysis

Star10

clathrin-mediated endocytosis analysis

bioinformatics quantitative-imaging microscopy cell-biology

UpdatedSep 26, 2025
MATLAB

DanuserLab /u-inferforce

Star8

u-inferforce (Traction Force Microscopy) is a MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads.

bioinformatics matlab quantitative-imaging cell-biology traction-force-microscopy

UpdatedSep 5, 2025
MATLAB

DanuserLab /u-probe

Star8

Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.

bioinformatics quantitative-imaging cell-biology biosensor ratiometric-biosensors

UpdatedSep 17, 2025
MATLAB

DanuserLab /u-register

Star6

Analyze local cell edge motions (e.g. protrusion and retraction) and to locally sample intracellular fluorescence signals in 2D fluorescence microscopy data.

bioinformatics quantitative-imaging segmentation microscopy cell-biology