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pseudoknot-base-pairs

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jaswindersingh2 /SPOT-RNA

RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

machine-learning deep-learning tensorflow rna-structure rna resnet transfer-learning ensemble-model rna-structural-analysis blstm-neural-networks rna-secondary-structure rna-secondary-structure-prediction canonical-base-pairs noncanonical-base-pairs pseudoknot-base-pairs pdb-dataset bprna-dataset multiplets-base-pairs lone-pairs rna-structure-motifs

UpdatedMay 23, 2025
Perl

jaswindersingh2 /SPOT-RNA2

Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

deep-learning transfer-learning multiple-sequence-alignment rna-secondary-structure canonical-base-pairs pseudoknot-base-pairs lone-pairs direct-coupling-analysis evolutionary-information non-canonical-base-pairs homologous-sequence spot-rna2 base-triples

UpdatedApr 3, 2021
Perl

jaswindersingh2 /RNAcmap

A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

gremlin evolutionary-couplings msa blastn rnafold infernal spot-rna canonical-base-pairs pseudoknot-base-pairs direct-coupling-analysis rna-seconday-structure plmc mf-dca end-to-end-pipeline non-canonical-base-pairs tertiary-interactions rna-contact-prediction

UpdatedNov 6, 2023
Python

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