proteome
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Genomic Data Retrieval with R
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Feb 3, 2025 - R
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
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Mar 12, 2025 - C#
Genome wide orthology inference and dNdS estimation
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Oct 10, 2023 - R
Matrix dissimilarity from the differences of Moments and sparsity
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Feb 9, 2024 - R
Tools for Batch Effects Diagnostics and Correction
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Apr 1, 2023 - R
Construction, quantification, and visualization of proteoform families
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Dec 16, 2024 - C#
An alignment-independent tool for the study of pathogen sequence diversity
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Apr 30, 2023 - Python
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
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Mar 3, 2023 - Nextflow
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
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May 4, 2023 - R
Scripts used for the phosho data analysis
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Mar 31, 2022 - Jupyter Notebook
Sharing some useful biological data that I generated during my PhD.
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Mar 4, 2022
Hydrophobicity of the human proteome
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Mar 11, 2024 - HTML
Proteome Discoverer Result File Reader
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Dec 4, 2024 - Jupyter Notebook
This repository contains a set of scripts and workflows designed to search for Respiratory Complex I (NADH Ubiquinone Oxidoreductase) subunits in prokaryotic genomes and proteomes.
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Mar 10, 2025 - Jupyter Notebook
Blast wrapper using snakemake to generate correspondance between a list of transcript or protein and some proteomes.
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Sep 6, 2022 - Python
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Aug 25, 2020 - Python
It assigns the phosphorylation site in protein
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Aug 4, 2022 - R
CWL descriptions for FragPipe Proteomics Pipline
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Apr 5, 2022 - Common Workflow Language
This is now the main repository. A few older issues are still tracked on gitlab for reference.
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Sep 6, 2023 - Jupyter Notebook
This repository is to store the used dataset for publications related to UNIQmin
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Jul 28, 2023
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