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protein-annotation

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GMOD /jbrowse

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, seehttps://github.com/GMOD/jbrowse-components.

bioinformatics genomics biology genome-annotation genome-browser protein-annotation

UpdatedMay 27, 2025
JavaScript

westlake-repl /ProTrek

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

protein-annotation protein-alignment contrastive-learning protein-language-model sequence-structure proteinclip protein-clip protein-text protein-text-search protein-natural-language-search

UpdatedJul 11, 2025
Python

elttaes /Revisiting-PLMs

Exploring Evolution-aware & free protein language models as protein function predictors

benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding

UpdatedSep 28, 2024
Python

raghavagps /Pfeature

A software package for computing features of peptides and proteins

bioinformatics machine-learning-algorithms protein-annotation amino-acid-composition function-annotation pssm-profile

UpdatedJun 7, 2024
Python

PedroMTQ /mantis

A package to annotate protein sequences

bioinformatics mantis hmmer protein-function-prediction protein-annotation

UpdatedFeb 23, 2025
Python

laurensvdwiel /metadome

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

genetics proteins gene-annotation genes pathogenicity variant-annotations protein-domains pathogenic-variants protein-annotation genetic-tolerance domain-homology variant-interpretation

UpdatedJul 1, 2025
Python

PedroMTQ /UniFunc

Tool for similarity analysis of protein function annotations.

nlp text-mining bioinformatics bioinformatics-analysis protein-annotation

UpdatedMar 2, 2022
Python

raghavagps /exopropred

An ensemble method for predicting proteins secreted via exosomes

bioinformatics machine-learning-algorithms protein-annotation subcellular-location-prediction exosomal-proteins

UpdatedOct 10, 2023
Python

MDhewei /mFASD

Novel method for specific metal-binding sites prediction with known 3D structure.

metal-binding-prediction protein-annotation

UpdatedJan 22, 2021
Python

holsapple /bioinformatics-hodgepodge

an assortment of bioinformatics inspired Python scripts

bioinformatics genetic-drift protein-annotation bioinformatics-tool

UpdatedApr 15, 2017
Python

EBI-Metagenomics /deciphon_web

React webapp to submit and retrieve jobs from Deciphon – a protein prediction tool for nanopore reads

react protein-annotation nanopore-sequencing

UpdatedNov 11, 2024
JavaScript

hamalcij /pfamannot

Protein Family Annotator

unix bioinformatics uniprot pfam protein-annotation

UpdatedMar 17, 2023
C

psipred /biod3

Protein annotation web graphics lib

d3 protein-annotation

UpdatedFeb 22, 2024
JavaScript

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