phyloseq
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microbiome R package
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Dec 7, 2024 - R
This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.
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Jun 6, 2024 - R
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
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Feb 17, 2025 - R
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo:https://ycl6.github.io/16S-Demo/
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Jul 19, 2021 - R
Fantaxtic - Nested Bar Plots for Phyloseq Data
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Jul 14, 2024 - R
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
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Aug 24, 2022 - HTML
A comprehensive and customizable R package for microbiome analysis.
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Dec 9, 2022 - R
A model-based visualization method for microbiome data
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Mar 29, 2023 - R
Dadaist2 🟨 Highway to R
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Mar 7, 2025 - HTML
accessory functions for processing microbial community data
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Dec 24, 2022 - R
📓 Minimal cheatsheet for functions in the phyloseq R package
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May 8, 2021
Mothur procedures for 16S and ITS analysis
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Apr 14, 2022 - R
How to analyze shotgun metagenomic data with phyloseq - a walkthrough
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Dec 15, 2019 - HTML
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
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Jul 19, 2021 - R
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
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Mar 21, 2023 - R
R scripts used for the analysis of microbiomes associated with stony coral tissue loss disease (SCTLD) in the Florida Reef Tract
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Oct 14, 2019 - R
New to Bioinformatics? Start Here!
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Sep 12, 2023 - Jupyter Notebook
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
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Mar 6, 2024 - R
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
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Jun 3, 2024 - R
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