phylogenomics
Here are 124 public repositories matching this topic...
Language:All
Sort:Most stars
An analysis and visualization platform for 'omics data
- Updated
Mar 21, 2025 - Python
Efficient phylogenomic software by maximum likelihood
- Updated
Nov 4, 2021 - C++
💾 📃 "Reads to report" for public health and clinical microbiology
- Updated
Mar 19, 2024 - Perl
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
- Updated
Mar 21, 2025 - TypeScript
A tool for drawing ANI clustermap between all-vs-all microbial genomes
- Updated
Sep 14, 2024 - Python
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
- Updated
Feb 18, 2025 - Python
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
- Updated
Dec 6, 2024 - Python
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
- Updated
Oct 7, 2024 - Python
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
- Updated
Jan 22, 2025 - Perl
Workflow for Building Microsynteny Networks
- Updated
Jul 30, 2022 - Shell
Hybridization detection using phylogenetic invariants
- Updated
Oct 29, 2024 - Python
PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
- Updated
Mar 21, 2025 - Python
a broadly applicable tool for automated gene identification and retrieval
- Updated
Dec 6, 2024 - Python
An R package to infer and analyze synteny networks from protein sequences
- Updated
Dec 18, 2024 - R
A tool for plotting CAFE5 gene family expansion/contraction result
- Updated
Sep 22, 2023 - Python
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
- Updated
Feb 3, 2025 - Python
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
- Updated
Feb 15, 2025 - Python
An ultrafast and memory efficient tool for phylogenomics
- Updated
Mar 20, 2025 - Rust
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
- Updated
Dec 4, 2023 - Python
Improve this page
Add a description, image, and links to thephylogenomics topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with thephylogenomics topic, visit your repo's landing page and select "manage topics."