phenotyping
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Ontology for the description of human clinical features
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Mar 9, 2025 - Makefile
Information and scripts for the CropAndWeed Dataset
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Apr 22, 2023 - Python
An interactive corn plant point cloud segmentation and annotation software (version 2.0)
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Jul 4, 2021 - MATLAB
Self-Supervised Vision Transformers for multiplexed imaging datasets
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Jul 1, 2024 - Python
Plant Phenotyping APP
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Oct 15, 2024 - Python
Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping
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Dec 5, 2024 - Python
Minimum Information About a Plant Phenotyping Experiment
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Jan 16, 2025 - HTML
a fast and automatic segmentation pipeline for point cloud of maize shoots
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Jan 31, 2023 - MATLAB
Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.
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Oct 29, 2023 - Python
3-Demeter Capture is a tool for building 3-D point clouds from images
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Dec 26, 2018 - Python
Sentinel-2 Crop Trait Retrieval Using Physiological and Phenological Priors from Field Phenotyping (Graf et al., 2023, RSE)
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Oct 19, 2023 - Python
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
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Feb 29, 2024 - JavaScript
Standard terms for annotating mammalian phenotypic data
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Mar 10, 2025 - Makefile
Internationalisation of the HPO content
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Feb 27, 2023
Web-interface to the Biofuel Ecophysiological Traits and Yields Database (used by PEcAn and TERRA REF)
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Aug 21, 2024 - Ruby
PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
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Feb 11, 2025 - Python
Implementation of the 3D reconstruction pipeline optimized for plant branching structures.
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Feb 24, 2025 - C
Software program for generating synthetic datasets for genotypes and phenotypes
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Jun 1, 2023 - Jupyter Notebook
A python package for agricultural phenotypic trait extraction from 2D image sets via 3D reconstruction and analysis of 3D point clouds.
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Jun 16, 2021 - Python
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