RADseq Data Exploration, Manipulation and Visualization using R

• UpdatedNov 6, 2024
• HTML

A high performance tool to identify orthologs and paralogs across genomes.

• UpdatedMar 8, 2023
• Python

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

• UpdatedMar 16, 2025
• Python

🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool

• UpdatedOct 2, 2019
• Perl

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

• UpdatedSep 17, 2024
• Shell

miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs

• UpdatedAug 11, 2023
• Python

Check trees for compatibility with defined groupings in unrooted trees - "The incontestable clan test"

• UpdatedAug 31, 2023
• C

Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs

• UpdatedFeb 28, 2023
• Python

The analytical pipeline of the AL4 strain genome

• UpdatedFeb 3, 2020
• R

Wrapper script that calls formatdb on nr database and then runs blastall against formatted db and parses the output.

• UpdatedJul 22, 2021
• Perl