paleoecology

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ropensci /neotoma

Star30

Programmatic R interface to the Neotoma Paleoecological Database.

cran r rstats r-package neotoma nsf paleoecology neotoma-database neotoma-apis

UpdatedNov 30, 2022
R

wfinsinger /tapas

Star11

Trend And PeAkS (TAPAS) analysis of temporal series (e.g. paleoecological records) to assess long-term trend and detect events (and eventually estimate event-return intervals)

trend paleoecology timeseries-analysis paleofire peak-detection

UpdatedAug 19, 2024
R

NeotomaDB /neotoma2

Star8

Repository for the updated neotoma R package.

r rstats neotoma nsf paleoecology earthcube

UpdatedDec 27, 2024
R

houchengbin /Fossil-Image-Identification

Star6

Fossil Image Identification using Deep Learning Ensembles of Data Augmented Multiviews accepted by "Methods in Ecology and Evolution"

data-augmentation paleoecology deep-learning-ensembles fossil-image-classification fusulinid fossil-identification identification-inconsistency

UpdatedNov 2, 2023
Python

alexhroom /rshift

Star4

An R library for paleoecology and regime shift analysis.

ecology paleoecology regime-shift

UpdatedJan 29, 2025
R

NeotomaDB /bulk-baconizing

Star3

Using bacon to generate a large number of new chronologies from existing Neotoma records.

workflow rmarkdown travis bacon neotoma paleoecology chronologies

UpdatedOct 24, 2019
HTML

SimonGoring /tilia-manual

Star2

The repository for the contents of the Tilia User Manual

documentation readthedocs neotoma paleoecology tilia

UpdatedAug 5, 2021

rglueckler /CharcoalFireReconstructionR

Star2

R script for the analysis of macroscopic charcoal records from sedimentary archives

fire reconstruction charcoal paleoecology paleofire

UpdatedJun 14, 2021
R

NeotomaDB /api_nodetest

Star2

node.js and express implementation for the Neotoma API

nodejs api express swagger neotoma paleoecology neotoma-database neotoma-api

UpdatedMar 15, 2025
HTML

throughput-ec /UnacquiredSites

Star1

Retrieving site information from journal articles for domain data repositories, including the Neotoma Paleoecology Database (neotomadb.org)

nlp deep-dive scraping neotoma paleoecology earthcube geodeepdive

UpdatedJan 20, 2021
Jupyter Notebook

NeotomaDB /Neotoma_SQL

Star1

Repository for functions associated with Neotoma's Postgres DB

postgres sql neotoma paleoecology

UpdatedFeb 5, 2025
Python

rachelsales14 /Sales_2022_SDM

Star1

Code for Sales et al 2021

cloud archaeology paleoecology andes forests legacies

UpdatedMar 11, 2022
R

NeotomaDB /NeotomaBot

Star1

A twitter bot to search for new records and then post them to twitter.

twitter-bot nsf paleoecology neotoma-database geoinformatics neotoma-api

UpdatedFeb 27, 2022
Python

NeotomaDB /neotoma_lakes

Star1

A repository for managing the matching of lake data between national hydrographic databases and Neotoma records.

database rmarkdown lakes usgs neotoma paleoecology

UpdatedJan 19, 2024
HTML

NeotomaDB /Interoperability_DeepDive

Star0

A repository for managing the FAIROS Quaternary Interoperability project.

networkx network-analysis neotoma paleoecology neotoma-database xdeepdive

UpdatedDec 4, 2024
Python

This repository contains the R code and the associated data files that were used to execute the entire workflow for the manuscript "Disruption of trait-environment relationships in African megafauna occurred in the middle Pleistocene" (published in Nature Communications)

data-visualization paleoecology time-series-analysis