otu
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Compare different differential abundance and expression methods
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Mar 8, 2022 - R
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
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Nov 7, 2025 - C++
Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
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Apr 20, 2021 - Python
OTU co-occurrence network inferrence base on null model for HPC
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Dec 16, 2024 - Shell
Building an interactive dashboard to explore the Belly Button Biodiversity dataset using JavaScript, D3, Plotly, HTML and CSS.
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Feb 16, 2024 - JavaScript
This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.
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May 28, 2018 - Shell
Rsearch: An R Interface to VSEARCH supporting visualization and parameter tuning
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Dec 16, 2025 - R
OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR…
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Sep 24, 2022 - Java
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Mar 6, 2018 - Python
R workflows used to analyze microbial community sequence data
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Apr 21, 2021 - R
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