obo

The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants follow and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Operations Committee with Editorial, Technical and Outreach working groups.

Here are 75 public repositories matching this topic...

Language:All

Filter by language

All75 Python16 Makefile9 Java7 Rust4 HTML3 C#2 Groovy2 JavaScript2 Ruby2 Shell2

Sort:Most stars

Sort options

Most stars Fewest stars Most forks Fewest forks Recently updated Least recently updated

protegeproject /protege

Star1.1k

Protege Desktop

java rdf semantics owl ontology knowledge-graph obo protege knowledge-management reasoning ontology-engineering protege-desktop

UpdatedMar 16, 2025
Java

protegeproject /webprotege

Star648

The webprotege code base

rdf semantics owl ontology knowledge-graph webapp obo ontologies knowledge-management ontology-engineering

UpdatedMar 14, 2024
Java

obophenotype /human-phenotype-ontology

Star305

Ontology for the description of human clinical features

semantic-web owl ontology obo phenotyping phenotype ontologies hpo monarchinitiative obofoundry

UpdatedMar 9, 2025
Makefile

ontodev /robot

Star269

ROBOT is an OBO Tool

owl ontology obo obofoundry

UpdatedMar 7, 2025
Java

INCATools /ontology-development-kit

Star242

Bootstrap an OBO Library ontology

robot continuous-integration owl ontology travis obo protege monarchinitiative obofoundry

UpdatedMar 13, 2025
Jinja

althonos /pronto

Star233

A Python frontend to (Open Biomedical) Ontologies.

python parser bioinformatics semantic-web owl ontology obo obofoundry obo-graphs

UpdatedMar 5, 2025
Python

geneontology /go-ontology

Star228

Source ontology files for the Gene Ontology

go owl ontology gene-ontology obo geneontology functional-annotation obofoundry

UpdatedMar 17, 2025
Makefile

OBOFoundry /OBOFoundry.github.io

Star171

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

open-source metadata bioinformatics annotation semantic-web ontology open-science obo life-sciences biocuration ontology-registry obofoundry

UpdatedMar 14, 2025
Python

dhimmel /obonet

Sponsor

Star137

OBO-formatted ontologies → networkx (Python 3)

python parser network ontology networkx rephetio obo obo-formatted-ontologies obo-files

UpdatedJul 20, 2024
Python

biolink /ontobio

Star126

python library for working with ontologies and ontology associations

python bioinformatics graph sparql rdf semantic-web ontology gene-ontology obo obofoundry ontology-tools

UpdatedFeb 11, 2025
Python

obi-ontology /obi

Star78

The Ontology for Biomedical Investigations

bioinformatics semantic-web owl ontology obo obofoundry

UpdatedMar 12, 2025
Python

biopragmatics /pyobo

Star62

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

bioinformatics obo ontologies obofoundry bioregistry biopragmatics

UpdatedMar 12, 2025
Python

pato-ontology /pato

Star58

PATO - the Phenotype And Trait Ontology

semantic-web ontology standards units obo phenotypes quantities trait-ontology qualities obofoundry

UpdatedMar 1, 2025
Makefile

evidenceontology /evidenceontology

Star50

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

annotation owl ontology obo evidence obofoundry