Movatterモバイル変換

Skip to content

#

nucleotides

Here are 48 public repositories matching this topic...

Language:All

Filter by language

All48 Python21 Java5 JavaScript3 C2 Jupyter Notebook2 R2 C++1 Clarion1 F#1 Go1

Sort:Most stars

Sort options

Most stars Fewest stars Most forks Fewest forks Recently updated Least recently updated

CSBiology /BioFSharp

Open source bioinformatics and computational biology toolbox written in F#.

docker bioinformatics fsharp biology datascience biostatistics amino-acids biocontainers bioinformatics-containers nucleotides dataprocessing sequence-analysis

UpdatedMay 14, 2024
F#

genomics-dev /variantkey

Numerical Encoding for Human Genetic Variants

genomics position dna variants base chromosome genetic reference-genome nucleotides rsid human-genetic-variants reference-allele alternate-allele variant-normalization reference-position variantkey

UpdatedJun 8, 2023
C

BioJulia /BioSymbols.jl

Nucleic and amino acid primitive types

bioinformatics biology computational-biology biological-data-analysis amino-acids nucleotides nucleic-acids biojulia

UpdatedJun 23, 2024
Julia

pnnl /mercat

MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data

python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis

UpdatedNov 30, 2022
Python

karubiotools /getSequenceInfo

A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories

metadata statistics genome assembly countries hosts genbank sequences nucleotides refseq

UpdatedMar 9, 2025
Perl

raw-lab /mercat2

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

python diversity plotly protein dask fastq k-mer-counting k-mer-frequency divideandconquer metagenomic-analysis metatranscriptomic-analysis kmer-frequency-count nucleotides diversity-estimation database-independent-analysis multiomics multiomics-data

UpdatedJun 12, 2024
HTML

Python-Sars-Cov-2-Mutation-Analysis

tonygeorge1984 /Python-Sars-Cov-2-Mutation-Analysis

Analysis of Sars Cov-2 Gene Mutations using Python Numpy and Matplotlib

bioinformatics genetic-analysis nucleotides coronavirus sars-cov-2 gene-mutations python-bioinformatics genetic-mutation-analysis

UpdatedJun 4, 2020
Python

xduan7 /bioseq-learning

deep learning experiments on biological sequences with PyTorch

bioinformatics deep-learning genome pytorch protein-sequences unsupervised-learning biological-sequences nucleotides gene-sequences

UpdatedMar 16, 2021
Python

burkesquires /FeaVar

A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.

python bioinformatics clustering protein-sequences sequence-alignment motif-discovery nucleotides

UpdatedMay 10, 2024
Clarion

zenodeapp /pairwise-alignments

Solidity implementations of well-known pairwise alignment methods such as Needleman-Wunsch's global sequence alignment and the Smith-Waterman local sequence alignment algorithm.

algorithm proteins smith-waterman needleman-wunsch dna alignment solidity contracts amino-acids nucleotides substitution-matrices

UpdatedDec 7, 2023
Solidity

jfkimberly /DXseq

Produces PDB files from given sequences.

python pdb dna nucleotides dx-tile

UpdatedAug 26, 2016
Python

aaiezza /FLiCK

FLiCK - Format LeveragIng Compression frameworK

bam-files bioinformatics rna-seq compression chemistry genetics biology danger computational-biology dna fasta fastq-format fastq compression-algorithm flick nucleotides fastq-files fasta-format sam-files fasta-files

UpdatedDec 22, 2017
Java

mutalyzer /backtranslate

Protein to RNA reverse translation

translation reverse substitutions amino-acid-sequence nucleotides backtranslation codon stop-codon amino-acid nucleotide-sequence

UpdatedJul 24, 2023
Python

OscBacon /tpe-adn

A website made for a year-long school project on how store data in DNA, using a nucleotides as our code. The website was made using the Flask framework to incoporate some python programs

python dna nucleotides

UpdatedMar 19, 2021
JavaScript

sarthakkg /GeneFinderFromDNA

Extracts all of the possible genes from a string of DNA

gene dna codons nucleotides triplets

UpdatedAug 18, 2020
Java

TomMakesThings /Phylogenetic-Tree-Inference

Inferring likelihood and mutation rate of an evolutionary tree through the Jukes-Cantor model and Felsenstein’s algorithm

bioinformatics evolution jupyter-notebook dna jukes-cantor nucleotides log-likelihood felsenstein acyclic-graphs phylogentic-tree

UpdatedNov 20, 2022
Jupyter Notebook

DatDarkAlpaca /shRNA

shRNA 2.0

python nucleotides sirna shrna

UpdatedJun 16, 2023
Python

FelixErnst /Modstrings

📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.

dna bioconductor rna sequences nucleotides rna-modifications biostrings modified-nucleotides rna-modification-alphabet dna-modifications

UpdatedMar 26, 2024
R

r-amaro /DNA-NucleotideScanner

This C program scans through DNA nucleotides and stores, then prints the 'words' of size 10 along with their locations.

c command-line scanner nucleotides

UpdatedFeb 18, 2021
C

DarkAdin /PythORF

A little independent Python algorithm capable of finding Open Reading Frames in any genomic sequence.

python genomics genetics open biology reading dna protein frame sequence molecular nucleotides orf targets codon

UpdatedSep 24, 2024
Python

Improve this page

Add a description, image, and links to thenucleotides topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with thenucleotides topic, visit your repo's landing page and select "manage topics."

[8]ページ先頭

©2009-2025 Movatter.jp