Multi-Omics Factor Analysis

• UpdatedJun 29, 2024
• R

muon is a multimodal omics Python framework

• UpdatedFeb 28, 2025
• Python

Multimodal Data (.h5mu) implementation for Python

• UpdatedMar 4, 2025
• Python

MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

• UpdatedOct 28, 2024
• Jupyter Notebook

Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

• UpdatedJul 6, 2023
• Jupyter Notebook

Single-cell multi-omics integration using Optimal Transport

• UpdatedSep 6, 2024
• Python

Multi-task deep learning framework for multi-omics data analysis

• UpdatedMay 5, 2022
• Python

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

• UpdatedJul 17, 2023
• Jupyter Notebook

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

• UpdatedMar 26, 2024
• R

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

• UpdatedJul 10, 2024
• Python

R package for High dimensional data analysis and integration with O2PLS!

• UpdatedAug 20, 2022
• R

.h5mu files interface for Seurat

• UpdatedNov 28, 2023
• R

Muon for Julia

• UpdatedFeb 28, 2025
• Julia

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

• UpdatedJul 6, 2023
• Jupyter Notebook

Time-Course Multi-Omics data integration

• UpdatedApr 9, 2024
• R

Python toolbox for multi-omics data mapping and analysis

• UpdatedApr 13, 2023
• Jupyter Notebook

Disease subnetwork detection with explainable Graph Neural Networks

• UpdatedMay 12, 2024
• Python

Molecular interactions inference from single-cell multi-omics data

• UpdatedNov 6, 2024
• R

OmicsSuite website for releasing new version.

• UpdatedJun 21, 2024
• HTML

Integrated Machine Learning for Multi-omics Classification and Prediction

• UpdatedMar 16, 2025
• HTML