microbial-genomics
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Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
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Jan 25, 2025 - Python
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
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Mar 11, 2025 - Python
A genome visualization python package for comparative genomics
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Jan 11, 2025 - Python
Build a partitioned pangenome graph from microbial genomes
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Mar 13, 2025 - Python
A tool for drawing ANI clustermap between all-vs-all microbial genomes
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Sep 14, 2024 - Python
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
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Sep 14, 2024 - Python
From genomes to phenotypes: Traitar, the microbial trait analyzer
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Aug 12, 2019 - Python
🦠📇 Microbial genomes-to-report pipeline
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Mar 5, 2025 - Python
Estimate metagenomic coverage and sequence diversity
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Aug 2, 2024 - C++
Collection of scripts for bacterial genomics
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Dec 6, 2019 - Perl
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
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Feb 13, 2025 - Python
A pipeline for high-quality bacterial genome construction using ONT sequencing
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Sep 22, 2022 - HTML
Microbial Genome Circular plotting tool for comparative genomics using Circos
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Feb 1, 2023 - Python
MiGA: Microbial Genomes Atlas
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Mar 13, 2025 - Ruby
A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
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Feb 15, 2023 - Java
Get microbial sequence data easier and faster
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Nov 7, 2019 - Perl
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
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Feb 14, 2023 - R
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
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Sep 3, 2024 - Python
A comprehensive and customizable R package for microbiome analysis.
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Dec 9, 2022 - R
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