Materials on the analysis of microarray expression data; focus on re-analysis of public data (http://tinyurl.com/cruk-microarray)

• UpdatedFeb 21, 2017
• HTML

Deep learning methods for feature selection in gene expression autism data.

• UpdatedJun 21, 2022
• Jupyter Notebook

Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia

• UpdatedMay 27, 2021
• Python

Collection of gene expression datasets

• UpdatedOct 1, 2023

Tumor prediction from microarray data using 10 machine learning classifiers. Feature extraction from microarray data using various feature extraction algorithms.

• UpdatedDec 21, 2020
• Python

A visualization support tool for advanced hierarchical clustering analysis. MLCut allows cutting dendrograms at multiple heights/levels. In other words, it allows to set multiple local similarity thresholds in potentially large dendrograms. It uses two coordinated views, one for the dentrogram (radial layout), and another for the original multid…

• UpdatedApr 21, 2021
• JavaScript

An Efficeint and Fast Wrapper-based High-dimensional Feature Selection(SIFE) in MATLAB

• UpdatedJun 14, 2023
• MATLAB

A python library to develop genomic data simulators

• UpdatedAug 29, 2023
• Python

Discriminant Analysis with Network PROcessing

• UpdatedDec 21, 2023
• Python

NOWAC data cleaning package

• UpdatedOct 29, 2018
• R

Generating expression signatures for disease using STARGEO

• UpdatedMar 29, 2016
• Jupyter Notebook

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

• UpdatedJul 24, 2019
• HTML

protGear is a package for protein microarray data processing just before the main analysis.

• UpdatedFeb 3, 2023
• R

This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.

• UpdatedJan 13, 2023
• R

Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk

• UpdatedApr 6, 2018
• Python

Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets

• UpdatedNov 18, 2019
• R

Code for the future "Classification of microarray data" paper.

• UpdatedJul 24, 2021
• Jupyter Notebook

TriCluster and microCluster gene expression clustering algorithms

• UpdatedMar 29, 2020
• C++

• UpdatedJun 13, 2019
• R

EXIS is an interactive R shiny application for isoform-specific expression analysis.

• UpdatedJul 8, 2021
• R