metaproteomics
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A tool for representing genomic potential and transcriptomic expression into KEGG pathways
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Jul 28, 2024 - Python
Meta-Omics Software for Community Analysis
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Nov 4, 2024 - Python
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
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Aug 25, 2020 - TSQL
A Ruby on Rails application for proteomics data analysis
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Mar 20, 2025 - Vue
Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to large spectral libraries at a high performance.
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Oct 6, 2023 - C++
gNOMO2 allows integrated multi-omics analyses of microbiomes
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Aug 7, 2024 - Python
Interactive visualisation and data annotation for meta-omics data
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Nov 1, 2023 - R
mPies: metaProteomics in environmental sciences
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Sep 23, 2022 - Python
Transformer-based de novo sequencing (Casanovo) + database searching with rescoring (Sage + Mokapot). For metaproteomics datasets
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Feb 15, 2025 - Jupyter Notebook
Pout2Prot converts Percolator output files to protein group and subgroup files using Occam's razor or anti-Occam's razor. These output files can directly be used in Prophane for further downstream taxonomic and functional analysis
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Nov 26, 2021 - Python
Peptide-centric functional enrichment tool
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Jun 1, 2022 - R
A fast and accurate fine-grained taxonomy-specific FDR assessment tool
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Jan 9, 2023 - Python
tools collection of Sipros for stable isotopic mass spectrum meta proteomic research
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Mar 21, 2023 - C
A novel tool for linking peptide with taxonomic and functional information with OTF in Metaproteomics.
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Mar 18, 2025 - Python
This repository holds the code and notes during the use of Casanovo as part of my Research Project, as well as links to resources used as part of the Metaproteomic Analysis of my samples.
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May 15, 2023 - Jupyter Notebook
🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.
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May 14, 2024 - Python
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