Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

• UpdatedMar 17, 2025
• C++

Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.

• UpdatedAug 13, 2022
• JavaScript

ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.

• UpdatedFeb 26, 2025
• MATLAB

C++/CUDA Implementation of the most popular reaction-diffusion dynamics

• UpdatedNov 17, 2023
• Cuda

EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.

• UpdatedJul 17, 2024
• MATLAB

Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.

• UpdatedDec 3, 2022
• JavaScript

Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.

• UpdatedJul 18, 2024
• Jupyter Notebook

Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl

• UpdatedJul 30, 2022
• Julia

Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.

• UpdatedJul 30, 2022
• Julia

Physically Based Modelling of Cirdadian Glucose Dynamics

• UpdatedDec 11, 2018
• MATLAB

Exploring biological networks with javascript

• UpdatedJan 26, 2022
• HTML

epidWaves is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data.

• UpdatedJul 18, 2024
• MATLAB

Tutorials on math epidemiology and epidemiology informed deep learning methods

• UpdatedNov 27, 2023
• Julia

Computational models for epithelial transport along the nephron.

• UpdatedMay 30, 2023
• Python

A Python package for representing reaction networks and simulating their behaviors

• UpdatedJul 11, 2018
• Python

3MC - African Mathematical School on Mathematical Modeling in Biology

• UpdatedApr 4, 2023
• R

Analysis script for "Neutral competition boosts chaos in food webs"

• UpdatedFeb 26, 2019
• MATLAB

• UpdatedJul 17, 2018
• C

Code base for honours thesis

• UpdatedNov 8, 2022
• Julia

Basic Turing Pattern Model using the Schnakenberg System

• UpdatedNov 27, 2021
• Python