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hniszlab /hoxd13

R/bash/perl code for analysis and visualization

repeat disease expansion tf transcription-factor idr amino-acid llps liquid-liquid-phase-separation hoxd13 spdh synpolydactyly

UpdatedJun 8, 2020
R

achattaraj /OptimalCondensateSize

Multi-condensate state as a functional strategy to optimize the cell signaling output

python systems-biology lammps reaction-diffusion biophysics ode-model condensates langevin-dynamics phase-transition llps phase-separation vcell signaling-condensates multiple-condensates

UpdatedJul 8, 2024
Jupyter Notebook

cfsb618 /PyPhaseChip

This code is for automatic analysis of the images of the LLPS microfluidic chip of Michael Heymann (10.1039/D0LC00613K)

llps phaseseparation molecularbiology proteinsynthesis

UpdatedOct 18, 2022
Jupyter Notebook

leontm-dev /spiky-cli

This is the github repository for the spiky-cli. A command line interface designed to transpile the spiky.js code into executable python code that is runnable on the SPIKE Prime Robots.

javascript python cli npm parser typescript npm-package transpiler lego transpile kids-programming spiky llps spike-prime leontm-dev

UpdatedOct 14, 2024
TypeScript

achattaraj /maximal_Solubility_product

Python scripts to analyze and visualize the data presented in the research article: "The maximum solubility product marks the threshold for condensation of multivalent biomolecules".

python molecular-simulation data-visualisation langevin-dynamics rule-based-modeling bionetgen phase-transition data-analysis-python llps springsalad multivalent-clustering biomolecular-condensates nfsim molclustpy

UpdatedApr 4, 2023
Jupyter Notebook

achattaraj /CondensateMerger

Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

lammps cross-linking metastability condensates langevin-dynamics polymer-physics llps phase-separation

UpdatedJan 30, 2025
Jupyter Notebook

achattaraj /ClusterFusion

lammps langevin-dynamics coalescence llps biomolecular-condensates

UpdatedJul 10, 2024
Jupyter Notebook

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