life-sciences

benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.

benchmark machine-learning deep-learning dataset clinical-trials dataset-generation drug-design life-sciences clinical-research clinical-data benchmark-datasets graph-neural-networks drug-development therapeutics clinical-research-data-warehouse

UpdatedJul 9, 2024
Python

NIGMS /NIGMS-Sandbox

Star68

Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

bioinformatics google-cloud-platform life-sciences nih

UpdatedMar 14, 2025
Shell

open-life-science /open-life-science.github.io

Sponsor

Star67

OLS website: web presence and knowledge management for we-are-ols.org

open-science hacktoberfest life-sciences open-research open-scholarship

UpdatedMar 21, 2025
HTML

servierhub /top-pharma50

Star58

Top open source software from the top 50 pharmaceutical companies

awesome bioinformatics ai computational-biology computational-chemistry awesome-list pharma life-sciences lifescience awesome-lists pharmaceuticals servier lifesciences ebiology biology-ai

UpdatedJun 9, 2024
Makefile

chupvl /awesome-ls-ventures

Star33

Awesome list of the data and AI/ML related projects with direct Life Science Companies participation

ai ml drug-discovery drug-design pharma life-sciences biotech drug-development

UpdatedSep 13, 2024

amberbiology /py4lifesci

Star28

Code repository for the book "Python for the Life Sciences" by Lancaster & Webster

python bioinformatics book systems-biology computational-biology next-generation-sequencing life-sciences

UpdatedMay 26, 2020
Python

STRIDES /NIHCloudLabGCP

Star27

Documentation and tutorials on using GCP for biomedical research

bioinformatics gcp google-cloud cloudlab google-cloud-platform life-sciences nih genai

UpdatedMar 6, 2025
Jupyter Notebook

hyperspy /hyperspyUI

Star27

A user interface for the hyperspy package.https://hyperspy.org/hyperspyUI

gui data-visualization data-analysis x-ray-spectroscopy materials-science spectroscopy life-sciences multi-dimensional eds physical-sciences eels hyperspy electron-energy-loss-spectroscoy

UpdatedMar 4, 2025
Python

carpentries-incubator /bioc-intro

Star27

Bioconductor data science introduction

r beta english bioconductor lesson hacktoberfest life-sciences carpentries-incubator

UpdatedMar 18, 2025
R

awslabs /guidance-for-multi-omics-and-multi-modal-data-integration-and-analysis-on-aws

Star24

This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale analysis and perform interactive queries against a data lake. The solution also demonstrates the use of Amazon Omics for multi-modal analysis.

aws multimodality life-sciences multimodal