LC-MS data processing tool for large-scale metabolomics experiments.

• UpdatedJul 11, 2022
• C++

Fast and Accurate CE-, GC- and LC-MS(/MS) Data Processing

• UpdatedFeb 22, 2023
• C++

The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.

• UpdatedMar 23, 2021
• TeX

AutoRT: Peptide retention time prediction using deep learning

• UpdatedJul 31, 2024
• Jupyter Notebook

Python module for lipidomics LC MS/MS data analysis

• UpdatedJun 27, 2024
• Python

R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

• UpdatedMay 10, 2024
• HTML

A python package for protein inference in Mass Spectrometric data analysis.

• UpdatedJun 6, 2022
• Python

LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.

• UpdatedApr 29, 2021
• Python

Code, Data and Results of the publication: "Probabilistic Framework for Integration of Tandem-Mass Spectrum and Retention Time Information in Small Molecule Identification" by Bach et al. 2020

• UpdatedDec 6, 2021
• MAXScript

High-throughput MS/MS annotation with a in-house database

• UpdatedDec 5, 2024
• R

BMDMS-NP

• UpdatedJan 10, 2023
• Python

tools collection of Sipros for stable isotopic mass spectrum meta proteomic research

• UpdatedMar 21, 2023
• C

Python & R scripts collection for AdipoAtlas project

• UpdatedSep 23, 2021
• Python

Generate annotated Peptide Spectrum Matches (PSMs) from proteomic database search result

• UpdatedAug 28, 2023
• Python

Extracts the features of peptide spectral library for better understanding and its efficient usage in DIA database search

• UpdatedSep 30, 2022
• Python

LC-MS/MS derived peptide retention time deviation calculator across replicates for DDA and DIA derived result files.

• UpdatedNov 10, 2022
• Python

MFQL files for Natural Products Dereplication

• UpdatedOct 4, 2019
• Perl

R package for annotation of glycans in MS1 and MS2 data

• UpdatedMay 11, 2022
• R

Predict and match digested peptides sequences, their mass m/z and MS/MS spectra with chemical derivatization or post-translational modification.

• UpdatedJun 17, 2023
• Julia

Predicting ion-mobility and spectra for labeled peptides

• UpdatedJan 19, 2024
• Jupyter Notebook