lastz

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gsneha26 /SegAlign

A Scalable GPU-Based Whole Genome Aligner, published in SC20:https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043

genomics cuda gpu-acceleration aws-ec2 comparative-genomics tbb lastz whole-genome-alignment genome-alignments genome-aligner

UpdatedAug 7, 2024
C++

jnarayan81 /parallelLastz

Star15

parallelLastz: Running Lastz in parallel

config genome core perl parallel alignment lastz forkmanager multi-threads

UpdatedSep 13, 2024
Perl

Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.

pipeline samtools bowtie2 lastz mummer

UpdatedSep 23, 2020
Python

AntoineHo /PLastZ

Star1

Parallel Lastz

python parallel alignment easy-to-use lastz

UpdatedOct 19, 2019
Python

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