Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

• UpdatedMar 11, 2025
• Nextflow

A simple test report for isoSeq3 of PacificBiosciences

• UpdatedJun 1, 2018

MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing

• UpdatedMar 1, 2023
• Shell

Iso-seq and Kallisto integration

• UpdatedJan 29, 2020
• Python

SIMulator for Long read transcriptome Analysis with RNA DecaY model

• UpdatedAug 10, 2020
• Python

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

• UpdatedJan 11, 2023
• Nextflow

A snakemake workflow to automate the IsoSeq3 pipeline from Pacific Biosciences

• UpdatedSep 28, 2022

This is the repository for the Dockerfile made to containerize and make the package available for the tools inhttps://github.com/Magdoll/cDNA_Cupcake. The package is automatically built and pushed upon any push to the repository using GitHub actions.

• UpdatedMar 10, 2022
• Dockerfile

MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing

• UpdatedAug 9, 2020