htseq
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Python library to access Gene Expression Omnibus Database (GEO)
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Jul 27, 2024 - Jupyter Notebook
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
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Feb 25, 2022 - Python
Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R
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Sep 30, 2022 - HTML
A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
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Dec 8, 2018 - HTML
RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
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Oct 16, 2023 - Shell
SLURM job temps@UAlbany
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May 25, 2018 - Shell
Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity
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Feb 17, 2023 - Dockerfile
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