hapmap

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Poissonfish /iPat

iPat allows you to perform GWAS and GS with drags and clicks!

gui gwas genomics genome analysis vcf hapmap genome-analysis genomic-data-analysis gene-prediction association-studies ipat

UpdatedJul 12, 2022
Java

krishnam /vcf2hmp

Star8

convert VCF to HMP format

tool convert vcf hapmap hmp

UpdatedAug 18, 2020
Python

npredey /GeneticAncestryTool

Star3

plink pca principal-component-analysis hapmap bioinformatics-tool gwas-tools

UpdatedApr 27, 2018
Python

AnstMikh /DNA

Star2

pipeline: from sra, bed, vcf to plink

python r pipeline plink samtools hapmap bcftools sratoolkit plink2 angsd

UpdatedJul 26, 2021
Jupyter Notebook

tbrunetti /CoVE

Star1

Concordance Validation across Experiments

snps validation pipeline array tgp hapmap concordance 1000genomes

UpdatedNov 21, 2017

jlboat /hapmap_to_qtl2

Star0

Convert HapMap file into a useable R qtl2 genotype file

python hapmap qtl-analyses qtl-mapping

UpdatedAug 16, 2022
Python

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