gwas-tools
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A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
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Mar 15, 2023 - JavaScript
A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
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Dec 27, 2023 - Python
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
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Apr 18, 2024 - Python
A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
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Mar 26, 2022 - R
Code and simulations using biologically annotated neural networks
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Aug 23, 2021 - HTML
Three bacterial GWAS methods all rolled into one easy-to-use R package
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Apr 16, 2024 - R
A faster lmm for GWAS. Supports GPU backend.
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Dec 5, 2018 - D
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
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Nov 29, 2022 - C++
tips and tricks in genome-wide association studies - a tutorial
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Jul 25, 2023
Higher-order genetic interaction discovery with network-based biological priors.
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Feb 8, 2024 - C++
Code and simulations using interaction-LD score regression
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Jul 2, 2024 - Python
The multivariate MArginal ePIstasis Test
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Oct 21, 2024 - R
A curated list (with links) of useful tools for genome-wide association analysis.
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Mar 1, 2019
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
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Dec 23, 2024 - JavaScript
A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously
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Oct 11, 2023 - C++
Make interactive LocusZoom plots from a local GWAS file
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Mar 4, 2023 - Vue
R package to perform data pre-processing for more informative bacterial GWAS
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Apr 7, 2023 - R
Code and simulations using an Ensemble of Single-Effect Neural Networks (ESNN)
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Nov 11, 2022 - Python
Tool for genome wide association studies with Bayesian inference and statistical learning
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Sep 30, 2021 - R
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