Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

• UpdatedMar 21, 2025
• Scala

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

• UpdatedMar 19, 2021
• HTML

Funnel is a toolkit for distributed task execution via a simple, standard API.

• UpdatedMar 21, 2025
• Go

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

• UpdatedJan 24, 2018
• Python

Repository for the GA4GH phenopacket schema

• UpdatedSep 19, 2024
• Java

The WES API is a standard way to run and manage portable workflows.

• UpdatedSep 28, 2024

GA4GH Variation Representation Python Implementation

• UpdatedMar 21, 2025
• Python

GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes

• UpdatedJan 9, 2025
• Python

GA4GH Beacon specification.

• UpdatedJan 25, 2023

APIs for discovering genomics tools, their metadata and their containers

• UpdatedOct 29, 2024
• Shell

Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

• UpdatedMar 10, 2025
• Jupyter Notebook

GA4GH cryptographic tools

• UpdatedJul 11, 2024
• Python

Trigger CWL workflows via GA4GH WES and TES

• UpdatedMar 5, 2025
• Python

An app and library for building, conversion, and validation of GA4GH Phenopackets.

• UpdatedSep 22, 2023
• Java

Repository for the family history/pedigree project

• UpdatedFeb 8, 2023

Code examples for working with web based bioinformatics APIs

• UpdatedFeb 17, 2017
• Jupyter Notebook

A crate for working with the Task Execution Service (TES) specification.

• UpdatedFeb 21, 2025
• Rust

Interoperable execution of workflows using GA4GH APIs

• UpdatedMay 19, 2021
• Python

Python-based GA4GH Beacon API Server

• UpdatedOct 23, 2023
• Python

Proxy service for injecting middleware into GA4GH TES requests

• UpdatedFeb 24, 2025
• Python