Software platform for clinical neuroimaging studies

• UpdatedMar 14, 2025
• Python

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

• UpdatedMay 15, 2018
• Python

This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

• UpdatedFeb 11, 2025

ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.

• UpdatedMay 17, 2024
• Python

Small Animal Magnetic Resonance Imaging via Python.

• UpdatedMar 4, 2024
• Python

FSL-R Interface package

• UpdatedFeb 6, 2025
• R

A re-implementation of FSL's Brain Extraction Tool in Python

• UpdatedJul 29, 2024
• Python

Probabilistic Threshold-Free Cluster Enhancement of Neuroimages

• UpdatedAug 11, 2023
• R

The project is used to do preprocessing on brain MR images by using Nipype.

• UpdatedJun 18, 2024
• Python

Code for performing static, dynamic and real-time shimming using external and internal MRI shim coils

• UpdatedMar 14, 2025
• Python

Tools for dealing with neuroimaging data in the BIDS structure

• UpdatedNov 21, 2018
• Python

Introduction to dMRI

• UpdatedMar 11, 2025
• Jupyter Notebook

PNH segmentation pipelines based on nipype

• UpdatedMar 13, 2025
• Python

Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data

• UpdatedDec 13, 2021
• Jupyter Notebook

FSL Anatomical Labels for MNI Vector/ROI

• UpdatedApr 1, 2021
• MATLAB

Utility MATLAB functions and wrappers for fMRI data analysis, mostly based in SPM12

• UpdatedJun 6, 2023
• MATLAB

atlasBREX: Automated averaged template-derived brain extraction in animal MRI

• UpdatedJan 15, 2024
• Shell

A collection of ILINK linker configurations that simplifies project setup for flash libraries on IAR Embedded Workbench for Renesas RL78

• UpdatedFeb 18, 2023

A volumetric version of the HCP-MMP1 atlas conveniently imported in FSL. This repo was used in Bedini, M., Olivetti, E., Avesani, P., & Baldauf, D. (2023). Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis. Brain Structure and Function, 1-21.

• UpdatedMar 5, 2025

ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.

• UpdatedMar 12, 2025
• Python